EWM24927.1, cds5758 (CDS) Nannochloropsis gaditana

Overview
NameEWM24927.1
Unique Namecds5758
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:806363..806697 +
Alignment locationCM002466.1:806766..806847 +
Alignment locationCM002466.1:806974..807612 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24927.1
Productundecaprenyl diphosphate synthase
Orig transcript idgnl|cribi|Naga_100092g12.2150.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:806363..806697 +
CM002466.1supercontigCM002466.1:806766..806847 +
CM002466.1supercontigCM002466.1:806974..807612 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
GO:0016765transferase activity, transferring alkyl or aryl (other than methyl) groups
Vocabulary: INTERPRO
TermDefinition
IPR001441UPP_synth-like
Homology
BLAST of EWM24927.1 vs. NCBI_GenBank
Match: gi|585106555|gb|EWM24927.1| (undecaprenyl diphosphate synthase [Nannochloropsis gaditana])

HSP 1 Score: 724.931 bits (1870), Expect = 0.000e+0
Identity = 351/351 (100.00%), Postives = 351/351 (100.00%), Query Frame = 0
Query:    1 MVKMSRKRPLFSPLRALFSVAVPYLASALLFFGLKGVRVVALRKSELSSVGRTGFLVYGGSHPRRYQHSAFVHQNNHHYHEFKEPIDEVRILPRNVEVPKHVAFILDGNGRWAEKQGLPRGAGHREGAKRALEVLQSCQALGIRTVTLYCLSTENWSRPAAEISVILACVETTLRTNLQYAHDNRIRLVVIGQSHRLPPNLQALVSQAERETALYTEGMTVCLALSYGGRDDIVQASRTLAEQAAMGEIQPQDIDEALFESCLSTGVKGVDGAPDLVIRTSGEQRWSNFMLFECAYSEFYVADVLWPDFQEPDLLAALESYGMRRRRFGGVREKRSALETEQVVGARRGDM 351
            MVKMSRKRPLFSPLRALFSVAVPYLASALLFFGLKGVRVVALRKSELSSVGRTGFLVYGGSHPRRYQHSAFVHQNNHHYHEFKEPIDEVRILPRNVEVPKHVAFILDGNGRWAEKQGLPRGAGHREGAKRALEVLQSCQALGIRTVTLYCLSTENWSRPAAEISVILACVETTLRTNLQYAHDNRIRLVVIGQSHRLPPNLQALVSQAERETALYTEGMTVCLALSYGGRDDIVQASRTLAEQAAMGEIQPQDIDEALFESCLSTGVKGVDGAPDLVIRTSGEQRWSNFMLFECAYSEFYVADVLWPDFQEPDLLAALESYGMRRRRFGGVREKRSALETEQVVGARRGDM
Sbjct:    1 MVKMSRKRPLFSPLRALFSVAVPYLASALLFFGLKGVRVVALRKSELSSVGRTGFLVYGGSHPRRYQHSAFVHQNNHHYHEFKEPIDEVRILPRNVEVPKHVAFILDGNGRWAEKQGLPRGAGHREGAKRALEVLQSCQALGIRTVTLYCLSTENWSRPAAEISVILACVETTLRTNLQYAHDNRIRLVVIGQSHRLPPNLQALVSQAERETALYTEGMTVCLALSYGGRDDIVQASRTLAEQAAMGEIQPQDIDEALFESCLSTGVKGVDGAPDLVIRTSGEQRWSNFMLFECAYSEFYVADVLWPDFQEPDLLAALESYGMRRRRFGGVREKRSALETEQVVGARRGDM 351          
BLAST of EWM24927.1 vs. NCBI_GenBank
Match: gi|651909694|ref|WP_026660659.1| (di-trans,poly-cis-decaprenylcistransferase [Butyrivibrio sp. AC2005])

HSP 1 Score: 235.343 bits (599), Expect = 5.785e-73
Identity = 106/242 (43.80%), Postives = 166/242 (68.60%), Query Frame = 0
Query:   92 LPRNVEVPKHVAFILDGNGRWAEKQGLPRGAGHREGAKRALEVLQSCQALGIRTVTLYCLSTENWSRPAAEISVILACVETTLRTNLQYAHDNRIRLVVIGQSHRLPPNLQALVSQAERETALYTEGMTVCLALSYGGRDDIVQASRTLAEQAAMGEIQPQDIDEALFESCLSTGVKGVDGAPDLVIRTSGEQRWSNFMLFECAYSEFYVADVLWPDFQEPDLLAALESYGMRRRRFGGVRE 333
            +  N ++P+HVA ILDGNGRWA+ +GLPR  GH++GAK   ++L   + +GI+ +T+Y  STENW+RP  E++ ++  ++T L+++++ +  N +R  VIG+  RL  +++A + + ER TA  T G+T  +A++YG RD+IV+A R LA++   GEI   +I E +    L TG       PDL+IRT GEQR SNF+L++CAY+EFY  D+ WPDF E +L  A+++YG R R++GG+++
Sbjct:    1 MEENKKIPQHVAIILDGNGRWAKAKGLPRNYGHKQGAKAVEDILVVARDMGIKYLTVYAFSTENWNRPETEVAALMTILKTYLKSSIKKSMKNNVRCQVIGERSRLSDDIRAAIEELERATAGNT-GLTFTIAINYGSRDEIVRAVRKLADECKTGEISADEISEEMISKNLDTGNI---PDPDLMIRTCGEQRLSNFLLWQCAYTEFYYTDIAWPDFDEAELQKAVDAYGNRNRKYGGLKD 238          
BLAST of EWM24927.1 vs. NCBI_GenBank
Match: gi|636850382|ref|WP_024370132.1| (MULTISPECIES: di-trans,poly-cis-decaprenylcistransferase [Exiguobacterium])

HSP 1 Score: 233.417 bits (594), Expect = 3.852e-72
Identity = 111/236 (47.03%), Postives = 159/236 (67.37%), Query Frame = 0
Query:   96 VEVPKHVAFILDGNGRWAEKQGLPRGAGHREGAKRALEVLQSCQALGIRTVTLYCLSTENWSRPAAEISVILACVETTLRTNLQYAHDNRIRLVVIGQSHRLPPNLQALVSQAERETALYTEGMTVCLALSYGGRDDIVQASRTLAEQAAMGEIQPQDIDEALFESCLSTGVKGVDGAPDLVIRTSGEQRWSNFMLFECAYSEFYVADVLWPDFQEPDLLAALESYGMRRRRFGGV 331
            + +P+HVA I+DGNGRWA+K+GLPR  GHREG K   E +++ Q LGI+++TLY  STENW+RP  E++ ++   +  L T+L+   +  +R++V G   RLP   +  V +A   TA  T G+ +  AL+YGGRD++VQA R +AE  A G IQP+ ID+ +    L T ++ V    DL+IRTSGEQR SNF+L++ AY+E +  DVLWP+F+    + A+E+Y MR RRFGGV
Sbjct:   15 LSIPEHVAIIMDGNGRWAKKRGLPRIMGHREGMKSVRESVRTAQELGIKSLTLYAFSTENWTRPEEEVNFLMKLPKQFLETDLKELDEQNVRVLVAGDVTRLPRGTREAVDEARTRTATNT-GLDLVFALNYGGRDELVQAMRLIAEDVAAGRIQPEQIDDVMIGERLMTNMQDV----DLIIRTSGEQRLSNFLLWQGAYAELHFTDVLWPEFKRDHFMEAIEAYNMRTRRFGGV 245          
BLAST of EWM24927.1 vs. NCBI_GenBank
Match: gi|736773843|ref|WP_034777251.1| (isoprenyl transferase [Exiguobacterium mexicanum] >gi|693730652|gb|KGI85166.1| UDP pyrophosphate synthase [Exiguobacterium mexicanum])

HSP 1 Score: 232.646 bits (592), Expect = 7.071e-72
Identity = 111/236 (47.03%), Postives = 159/236 (67.37%), Query Frame = 0
Query:   96 VEVPKHVAFILDGNGRWAEKQGLPRGAGHREGAKRALEVLQSCQALGIRTVTLYCLSTENWSRPAAEISVILACVETTLRTNLQYAHDNRIRLVVIGQSHRLPPNLQALVSQAERETALYTEGMTVCLALSYGGRDDIVQASRTLAEQAAMGEIQPQDIDEALFESCLSTGVKGVDGAPDLVIRTSGEQRWSNFMLFECAYSEFYVADVLWPDFQEPDLLAALESYGMRRRRFGGV 331
            + +P+HVA I+DGNGRWA+K+GLPR  GHREG K   E +++ Q LGIR++TLY  STENW+RP  E++ ++   +  L T+L+   +  +R++V G   +LP   +  V +A   TA  T G+ +  AL+YGGRD++VQA R +A   A G+IQP DID+A+    L T ++ V    DL+IRTSGEQR SNF+L++ AY+E +  DVLWP+F+    + A+E+Y  R RRFGGV
Sbjct:   15 LSIPEHVAIIMDGNGRWAKKRGLPRIMGHREGMKSVREAVRTAQELGIRSLTLYAFSTENWTRPEEEVNFLMKLPKQFLETDLKELDEQNVRVLVAGDVSKLPRGTRDAVDEARTRTATNT-GLDLVFALNYGGRDELVQAMRHIASDVAAGKIQPDDIDDAMIGQRLMTNMQDV----DLIIRTSGEQRLSNFLLWQGAYAELHFTDVLWPEFKRDHFVEAIEAYNARTRRFGGV 245          
BLAST of EWM24927.1 vs. NCBI_GenBank
Match: gi|984858996|gb|KWW96855.1| (UDP pyrophosphate synthase [Hydrogenibacillus schlegelii] >gi|1032910943|gb|OAR04782.1| UDP pyrophosphate synthase [Hydrogenibacillus schlegelii])

HSP 1 Score: 232.261 bits (591), Expect = 8.159e-72
Identity = 122/234 (52.14%), Postives = 156/234 (66.67%), Query Frame = 0
Query:   98 VPKHVAFILDGNGRWAEKQGLPRGAGHREGAKRALEVLQSCQALGIRTVTLYCLSTENWSRPAAEISVILACVETTLRTNLQYAHDNRIRLVVIGQSHRLPPNLQALVSQAERETALYTEGMTVCLALSYGGRDDIVQASRTLAEQAAMGEIQPQDIDEALFESCLSTGVKGVDGAPDLVIRTSGEQRWSNFMLFECAYSEFYVADVLWPDFQEPDLLAALESYGMRRRRFGGV 331
            VP+HVA I+DGNGRWA  +GLPR  GHREG K   EV  +   LGI  +TLY  STENW RP  E+  ++A  +  L+T L+    N +R+ V+G  + LPP+ +A V +A R TA  T G+ +  AL+YGGR DI +A+R LAE A  GEI+P+ IDEA   + LST   G+   PDL+IRTSGE R SNFMLFE AY+E +  D LWPDF+  DL AA+E+Y  R RRFGG+
Sbjct:    8 VPRHVAIIMDGNGRWARARGLPRVMGHREGMKTVREVALAAHGLGIEVLTLYAFSTENWKRPRDEVDFLMALPQEFLQTELENLIQNNVRVRVMGDPNPLPPHTRAAVEEAVRRTAANT-GLILNFALNYGGRMDIARAARKLAESAVAGEIRPEAIDEAAVAAALSTA--GLPD-PDLLIRTSGEMRLSNFMLFELAYTELWFVDKLWPDFRREDLEAAVEAYRRRDRRFGGL 237          
BLAST of EWM24927.1 vs. NCBI_GenBank
Match: gi|1122352758|ref|WP_074037225.1| (isoprenyl transferase [Exiguobacterium profundum])

HSP 1 Score: 231.106 bits (588), Expect = 2.831e-71
Identity = 111/234 (47.44%), Postives = 159/234 (67.95%), Query Frame = 0
Query:   98 VPKHVAFILDGNGRWAEKQGLPRGAGHREGAKRALEVLQSCQALGIRTVTLYCLSTENWSRPAAEISVILACVETTLRTNLQYAHDNRIRLVVIGQSHRLPPNLQALVSQAERETALYTEGMTVCLALSYGGRDDIVQASRTLAEQAAMGEIQPQDIDEALFESCLSTGVKGVDGAPDLVIRTSGEQRWSNFMLFECAYSEFYVADVLWPDFQEPDLLAALESYGMRRRRFGGV 331
            VP++VA I+DGNGRWA+K+GLPR  GHREG K   E +++ Q LGIR++TLY  STENW+RP  E+S ++   +  L T+L+  H+  +R++V G + +LP   +  V++A RE  +   G+ +  AL+YGGRD++VQA R++A     G +QP DID+ +    L T V+ V    DLVIRTSGEQR SNF+L++ AY+E +  +VLWP+F+    + A+ESY  R RRFGGV
Sbjct:   17 VPENVAIIMDGNGRWAKKRGLPRIMGHREGMKSIREAVRTAQELGIRSLTLYAFSTENWTRPEEEVSFLMKLPKQFLETDLKELHEQNVRVLVAGDTSKLPRETREAVNEA-RERTVANTGLNLVFALNYGGRDELVQAMRSIAGDVQSGLVQPDDIDDRMIGERLMTHVQDV----DLVIRTSGEQRLSNFLLWQSAYAELHFTEVLWPEFKREHFVEAIESYNARTRRFGGV 245          
BLAST of EWM24927.1 vs. NCBI_GenBank
Match: gi|1152058242|ref|WP_078146718.1| (isoprenyl transferase [Exiguobacterium sp. HVEsp1])

HSP 1 Score: 230.72 bits (587), Expect = 4.183e-71
Identity = 111/234 (47.44%), Postives = 157/234 (67.09%), Query Frame = 0
Query:   98 VPKHVAFILDGNGRWAEKQGLPRGAGHREGAKRALEVLQSCQALGIRTVTLYCLSTENWSRPAAEISVILACVETTLRTNLQYAHDNRIRLVVIGQSHRLPPNLQALVSQAERETALYTEGMTVCLALSYGGRDDIVQASRTLAEQAAMGEIQPQDIDEALFESCLSTGVKGVDGAPDLVIRTSGEQRWSNFMLFECAYSEFYVADVLWPDFQEPDLLAALESYGMRRRRFGGV 331
            VP+HVA I+DGNGRWA+K+GLPR  GHREG K   E +++ Q LGIR++TLY  STENW+RP  E+S ++   +  L T+L+  H+  +R++V G + +LP   +  V +A RE  +   G+ +  AL+YGGRD++VQA R++A     G +Q  DID+ +    L T V+ V    DLVIRTSGEQR SNF+L++ AY+E +  +VLWP+F+    + A+ESY  R RRFGGV
Sbjct:   17 VPEHVAIIMDGNGRWAKKRGLPRIMGHREGMKSIREAVRTAQELGIRSLTLYAFSTENWTRPEEEVSFLMKLPKQFLETDLKELHEQNVRVLVAGDTSKLPRETREAVDEA-RERTVANTGLNLVFALNYGGRDELVQAMRSIAADVQSGLVQTDDIDDRMIGERLMTHVQDV----DLVIRTSGEQRLSNFLLWQSAYAELHFTEVLWPEFKREHFVEAIESYNARTRRFGGV 245          
BLAST of EWM24927.1 vs. NCBI_GenBank
Match: gi|652431152|ref|WP_026826220.1| (di-trans,poly-cis-decaprenylcistransferase [Exiguobacterium marinum])

HSP 1 Score: 230.335 bits (586), Expect = 6.738e-71
Identity = 112/234 (47.86%), Postives = 157/234 (67.09%), Query Frame = 0
Query:   98 VPKHVAFILDGNGRWAEKQGLPRGAGHREGAKRALEVLQSCQALGIRTVTLYCLSTENWSRPAAEISVILACVETTLRTNLQYAHDNRIRLVVIGQSHRLPPNLQALVSQAERETALYTEGMTVCLALSYGGRDDIVQASRTLAEQAAMGEIQPQDIDEALFESCLSTGVKGVDGAPDLVIRTSGEQRWSNFMLFECAYSEFYVADVLWPDFQEPDLLAALESYGMRRRRFGGV 331
            VP+HVA I+DGNGRWA+K+GLPR  GHREG K   E +++ Q LGI+++TLY  STENW+RP  E+S ++   +  L T+L+  H+  +R++V G + +LP   +  V +A   T + T G+ +  AL+YGGRD++VQA R++AE    G IQ   ID+ L    L T V+ V    DLVIRTSGEQR SNF+L++ AY+E +  +VLWP+F+    + A+ESY  R RRFGGV
Sbjct:   17 VPEHVAIIMDGNGRWAKKRGLPRIMGHREGMKSIREAVRTAQELGIQSLTLYAFSTENWTRPEEEVSFLMKLPKQFLETDLKELHEQNVRVLVAGDTTKLPRETREAVDEARERTVMNT-GLKLVFALNYGGRDELVQAMRSIAEDVQSGLIQSNAIDDHLIGERLMTHVQDV----DLVIRTSGEQRLSNFLLWQSAYAELHFTEVLWPEFKREHFVEAIESYNARTRRFGGV 245          
BLAST of EWM24927.1 vs. NCBI_GenBank
Match: gi|651895137|ref|WP_026653220.1| (di-trans,poly-cis-decaprenylcistransferase [Butyrivibrio proteoclasticus])

HSP 1 Score: 229.95 bits (585), Expect = 9.547e-71
Identity = 104/240 (43.33%), Postives = 161/240 (67.08%), Query Frame = 0
Query:   96 VEVPKHVAFILDGNGRWAEKQGLPRGAGHREGAKRALEVLQSCQALGIRTVTLYCLSTENWSRPAAEISVILACVETTLRTNLQYAHDNRIRLVVIGQSHRLPPNLQALVSQAERETALYTEGMTVCLALSYGGRDDIVQASRTLAEQAAMGEIQPQDIDEALFESCLSTGVKGVDGAPDLVIRTSGEQRWSNFMLFECAYSEFYVADVLWPDFQEPDLLAALESYGMRRRRFGGVREKR 335
              +P+HVA ILDGNGRWA+ +G+PR  GH +GAK   ++L   + LGI+ +T+Y  STENW+RP AE+S ++  +   L+T+++ +  N +R  VIG+   L P++QA +++ E  TA  T G+T  +A++YG RD+I +A R +A++   G++ P+DI E +    L T        PDL+IRT  EQR SN++L++CAY+EFY   V WPDF + +L+ A+ESYG R R+FGG+++ +
Sbjct:    5 TNIPEHVAIILDGNGRWAKAKGMPRNYGHMQGAKAVEDILVDARDLGIKYLTVYAFSTENWTRPEAEVSALMTILRNYLKTSIKKSMKNNVRCRVIGERSALSPDIQAAINELEEATAGNT-GLTFTIAINYGSRDEITRAVRKVAKKVKAGDLAPEDITEQMIAENLDTNFL---PDPDLLIRTCNEQRISNYLLWQCAYTEFYYTPVAWPDFNKAELIKAIESYGNRNRKFGGLKKDQ 240          
BLAST of EWM24927.1 vs. NCBI_GenBank
Match: gi|506361700|ref|WP_015881419.1| (MULTISPECIES: isoprenyl transferase [Exiguobacterium] >gi|229470088|gb|ACQ71860.1| undecaprenyl diphosphate synthase [Exiguobacterium sp. AT1b])

HSP 1 Score: 229.95 bits (585), Expect = 9.634e-71
Identity = 110/234 (47.01%), Postives = 157/234 (67.09%), Query Frame = 0
Query:   98 VPKHVAFILDGNGRWAEKQGLPRGAGHREGAKRALEVLQSCQALGIRTVTLYCLSTENWSRPAAEISVILACVETTLRTNLQYAHDNRIRLVVIGQSHRLPPNLQALVSQAERETALYTEGMTVCLALSYGGRDDIVQASRTLAEQAAMGEIQPQDIDEALFESCLSTGVKGVDGAPDLVIRTSGEQRWSNFMLFECAYSEFYVADVLWPDFQEPDLLAALESYGMRRRRFGGV 331
            VP+HVA I+DGNGRWA+K+GLPR  GHREG K   E +++ Q LGIR++TLY  STENW+RP  E+S ++   +  L T+L+  H+  +R++V G + +LP   +  V +A RE  +   G+ +  AL+YGGRD++VQA R++A     G ++  DID+ +    L T V+ V    DLVIRTSGEQR SNF+L++ AY+E +  +VLWP+F+    + A+ESY  R RRFGGV
Sbjct:   17 VPEHVAIIMDGNGRWAKKRGLPRIMGHREGMKSIREAVRTAQELGIRSLTLYAFSTENWTRPEEEVSFLMKLPKQFLETDLKELHEQNVRVLVAGDTSKLPRETREAVDEA-RERTVANTGLNLVFALNYGGRDELVQAMRSIAVDVQSGSVRADDIDDRMIGERLMTHVQDV----DLVIRTSGEQRLSNFLLWQSAYAELHFTEVLWPEFKREHFVEAIESYNARTRRFGGV 245          
The following BLAST results are available for this feature:
BLAST of EWM24927.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106555|gb|EWM24927.1|0.000e+0100.00undecaprenyl diphosphate synthase [Nannochloropsis... [more]
gi|651909694|ref|WP_026660659.1|5.785e-7343.80di-trans,poly-cis-decaprenylcistransferase [Butyri... [more]
gi|636850382|ref|WP_024370132.1|3.852e-7247.03MULTISPECIES: di-trans,poly-cis-decaprenylcistrans... [more]
gi|736773843|ref|WP_034777251.1|7.071e-7247.03isoprenyl transferase [Exiguobacterium mexicanum] ... [more]
gi|984858996|gb|KWW96855.1|8.159e-7252.14UDP pyrophosphate synthase [Hydrogenibacillus schl... [more]
gi|1122352758|ref|WP_074037225.1|2.831e-7147.44isoprenyl transferase [Exiguobacterium profundum][more]
gi|1152058242|ref|WP_078146718.1|4.183e-7147.44isoprenyl transferase [Exiguobacterium sp. HVEsp1][more]
gi|652431152|ref|WP_026826220.1|6.738e-7147.86di-trans,poly-cis-decaprenylcistransferase [Exiguo... [more]
gi|651895137|ref|WP_026653220.1|9.547e-7143.33di-trans,poly-cis-decaprenylcistransferase [Butyri... [more]
gi|506361700|ref|WP_015881419.1|9.634e-7147.01MULTISPECIES: isoprenyl transferase [Exiguobacteri... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5773rna5773Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications