rna5768, rna5768 (mRNA) Nannochloropsis gaditana

Overview
Namerna5768
Unique Namerna5768
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2068
Alignment locationCM002466.1:788378..790124 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100092g7.2131.mrna
Orig protein idgnl|cribi|Naga_100092g7.2131
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:788378..790124 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100092g7gene5572Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5768rna5768-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24908.1cds5753Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5768 ID=rna5768|Name=rna5768|organism=Nannochloropsis gaditana|type=mRNA|length=2068bp
CTGATTTAGTACCCCGCCAATACACTGTCCACCCGAACTCAGTGCACGCG
GACTAGGCTCCGTGTATTTCAGCACATGGAATACACCTTTCCGCCACCGC
GATGTGGGTTACTGGACGTGAATGCTTTCTATGGCTTTGATTTTTAGAGG
TGTGGTGGTGAGGCGATCGGGAGACGCGTCGATCACGGAAGACACGAGGG
AGAGCTTAGCTAGCTCCAGGGTGCAAACGTCGGCTGAATTTTTTCTTTTC
CATCACATCCTGGAACGGATTTTATGGAGATTCGTTTTTAATGTTTGTTT
CGTCAAGTTCTTGCGATTTCATGCGGTTGATCGCCTGATTGCCAGCTCTT
CAAAAGCATGAAAGGCCTGCCCTGTTCATAGGTTCTCGGCCCACTTGCTT
CAAAGCGTACCGTAGAGAGGTTCGTGAAGAACAGGATGGGAAAAATAGAA
GTTTATATTCACAGTTGTAGTAGGTGCATCATGTCCATGCTAAGAATTCT
CGTTACCGCTGCAAAGGGGGTAAAAGTGGCCGGTGGAGGTCTTAGGGTAC
CTCGGCAAAGCCCTTGTGGGACCAATGATAATGTCTGTCTTTAGCAAGGA
TATGAATACGTGCGAGCTAACACACAACGAATTTATGAGTGCCACGACAT
CCTATCTTACAACTGGGATTTTGCAGGTACCGTCACGTACGTACGTATGG
TTAATTGCTATACAAATAACGGGACGGATGGCAACAGAGGGTGGGACTAT
TGCCAAGACCTTTAAGACTTCGTGTATTATTGGCTATCAAACGCGCGCTA
ATGTTTCTGTATCCCGTAGCGCGCGTGCGATAGCCAATATTACACGAAGT
CTTAAAGGCCTTGGCAAGAATACCAATCTCTGTTGCCATCCGTCCCATCA
TCTTTTGATAACGCTGAAACTTCCCTTGCTTGGTTACCTTCGGATACATA
TTGCCTGTGCCCTCGATCCTCGTCAATATCTCTCTTTTCACTGAGTGCAC
GATTTAATTAATATTCCTTGATATTTCTATACGCAGCTTCAATCAAGGCA
TTGTCAAAGATCGGACTCGCGCGCTTCCTGGAATGCGACGGCCTTTACTG
TAGCAATAGACTTAGGACTGTCTTAGCATTGAGAACCTGTAGTTAATTGT
CAAGCTCGTCATTTTTTAGACACCCCTGATACCTGTATTCGCGATTTCGT
ATTGCATGGGCCTAGTCATTTGATTTTATTTATTCATTACTGCTCATTGT
GGGCGCATTGTTCATCAGCGCGCACACATTAGACCTAAAACGCTTAGACG
ATCATTGTTGATATTTTCCTTTCAATCCAAAAATATTAGGAACCGTTGAA
TTTCTTCGTTTTAATTAGTAATTTTAAAAGTCCAAGCGATTACAGATTCT
GCAAAGAAATTCTGATGAGATTTAAGCAATGTATGCTCTGATGGCATCAC
ATTGGCGAACGCGTGGTTGCAATTCAAATGTATACCATTCCACCTGTGGA
TGTCGGATTACGTCTTATCCCTTTCTCATAATTTTTTTCGACGTATGCAT
CAAAATTGTGCTCCTCTATTCATTTGTTGAGGACAAATTACTGGTTATGC
TTGAAATGAGGCGGGTGCCGTGTCAGGTTTGAGTGCGTATCGACGCACCG
CAAAATCCACCACACACTTAATTAAGACATATGACGTCTTCTTCAACAGC
TTCTCGTCTCTGCAATCAAAATGTTTTGAGAGAAAGGTATTGTAATCTTC
GTCAGTGACCGTCTCAACTAAAATGTCTGATAGTGTTTTAGACCTGAGTC
GGGCTGCCAAGGCCTCGAGTCCAATATTGCGCAGAGAGACCTCAACATCC
CTACTAGTGGTGTACAACCAAAGTTGAGCAACCATTTCTTTGTTCAAACA
AGCATTAAGAAGTGTATAAAGTCGATTCCCCATCGCAGAACACCTGTCAA
AAATCATATACCGGGGTGAAATGCGAAAAAGGGATGAAAAACTTGTAGGG
GACCAATTCGTTCATTTTCTTATTCGACAAATAAGCTCTATTGGAAAGAA
TTTGGATAGTGTATCCCC
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protein sequence of rna5768

>rna5768-protein ID=rna5768-protein|Name=rna5768|organism=Nannochloropsis gaditana|type=polypeptide|length=308bp
MLMCWYCCCRFVSSITFGRSRLTTTSPPKERLRDNICWVHLSTTMTSHKN
TVALAALSADDDEEAEEDEELPEIYYKAARSSTPDIQPVLTASSVPRKDA
IPAPPSLPTDVPTLQKALLSAEGRLVGFQNREQVYVHQLQEKDAEILELH
RHIQELRVFQSPPEAWGRKVLVDPGVAMELRLLREKIAELEASEKFLKED
AQARHFSAESATGEALLNKCRRLQQENESLARRLGEMEKGTGEDGLEGAF
RKQIAILQEQLEESKARAEDLDEERGLLSTMVYALKKQLAAAGVDDGEGS
TGMAVETE
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mRNA from alignment at CM002466.1:788378..790124-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5768 ID=rna5768|Name=rna5768|organism=Nannochloropsis gaditana|type=mRNA|length=1747bp|location=Sequence derived from alignment at CM002466.1:788378..790124- (Nannochloropsis gaditana)
GCACACGGGGTTGGAACGCCGGTTCACGTTTTCTTTTTAAGTTTTCCTGG
AATGTGCTGGCATTCAAATGTTGATGTGCTGGTACTGTTGTTGCAGGTTT
GTTTCCTCTATAACTTTTGGTCGCAGTAGGCTTACTACTACCTCCCCCCC
AAAGGAAAGACTCCGGGACAATATTTGCTGGGTACATCTGTCCACCACGA
TGACTAGCCACAAGAACACGGTGGCTTTGGCAGCTCTAAGCGCAGATGAT
GATGAGGAAGCAGAGGAAGACGAAGAATTGCCGGTGAGGAAGGCTTCTAC
AAAGTACAACATCACTTGTACGGCGTGCTGAGAGTTTCATTTCATGGGTT
TCTAACTCTCTTCAACCGTCGCAACAGGAAATATATTACAAAGCTGCTAG
ATCTTCTACACCTGACATCCAGCCAGTTTTGACCGCTTCCAGCGTACCAA
GAAAAGATGCTATCCCGGCGCCCCCATCTCTCCCTACGGATGTTCCCACT
CTTCAAAAAGCCCTCCTTTCCGCTGAGGGTAGGCTCGTCGGATTTCAAAA
TCGTGAACAAGTGTACGTTCATCAGCTTCAGGAAAAAGACGCGGAAATTT
TGGAGTTGCACCGCCATATTCAAGAATTAAGGGTCTTCCAAAGTCCACCT
GAGGCGTGGGGAAGGAAAGTGCTGGTCGACCCTGGCGTAGCTATGGAGTT
GCGCTTATTACGCGAAAAGATCGCAGAATTGGAAGCGTCCGAAAAATTTT
TGAAAGAGGATGCTCAGGCACGGCACTTTTCTGCTGAAAGCGCCACCGGA
GAAGCGCTCTTGAACAAATGTCGCCGACTGCAGCAAGAAAATGAGTCTTT
GGCCAGACGGCTGGGAGAGATGGAGAAAGGGACAGGGGAGGACGGACTTG
AAGGGGCGTTTAGAAAACAAATTGCGATTTTGCAGGAACAGCTAGAGGAA
AGTAAGGCAAGAGCGGAGGATTTAGACGAAGAAAGAGGGTTGTTGAGTAC
CATGGTGTATGCGCTCAAAAAGCAGCTAGCTGCGGCTGGGGTAGACGACG
GTGAGGGAAGCACAGGCATGGCAGTGGAGACTGAATGACTTGTCTCAACT
CCTTTTGTAAATGAAGAAATTCATGAGAAAGGAAATCTGCCATGGACGCC
ACGAGAAGAAAATTGCGAAGGGAGGGGGCCTCTTCTGCGTCCTTTTGGTT
CTTAGACCCACCTATCAAAGATATCTTGCGGCTTGACATGTCATACGTTA
AAGTCTTAGTTTCGATGTTTGGTACAGCGGTATCACGCGACAGGCAGTAA
ATTACAATATTGAAAGCTAACCTGAAGCGGCATAGACAATGCAAGATGGG
CCCCTGGGAACACTCGCGAAGCAAGCCGTTTCCACGGTTATCAGCCGTTT
GTGAAAGCCGGATTCTCTCTGTCGCACCCTGCTCCCCGGCGTTTTAAAAA
CAATGCTATCATTTTCCTGAAAGTGTATGAGGTGTTTGAGGTGATTTTTG
GATACCAGAAAAGAAACGCACTTATCACTATTTCCCTCCCTAGCATTTCG
AAAGGGTGAGGGCTTGAAGGCTGGTCTCATTTCGGAAGCATATAAGTACT
GTTATCCGAGCATTACGATATTTTAATCGACAATGAGAGGAGGAAAGGGG
ATACACTATCCAAATTCTTTCCAATAGAGCTTATTTGTCGAATAAGAAAA
TGAACGAATTGGTCCCCTACAAGTTTTTCATCCCTTTTTCGCATTTC
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Coding sequence (CDS) from alignment at CM002466.1:788378..790124-

>rna5768 ID=rna5768|Name=rna5768|organism=Nannochloropsis gaditana|type=CDS|length=1854bp|location=Sequence derived from alignment at CM002466.1:788378..790124- (Nannochloropsis gaditana)
GAAATATATTACAAAGCTGCTAGATCTTCTACACCTGACATCCAGCCAGT
TTTGACCGCTTCCAGCGTACCAAGAAAAGATGCTATCCCGGCGCCCCCAT
CTCTCCCTACGGATGTTCCCACTCTTCAAAAAGCCCTCCTTTCCGCTGAG
GGTAGGCTCGTCGGATTTCAAAATCGTGAACAAGTGTACGTTCATCAGCT
TCAGGAAAAAGACGCGGAAATTTTGGAGTTGCACCGCCATATTCAAGAAT
TAAGGGTCTTCCAAAGTCCACCTGAGGCGTGGGGAAGGAAAGTGCTGGTC
GACCCTGGCGTAGCTATGGAGTTGCGCTTATTACGCGAAAAGATCGCAGA
ATTGGAAGCGTCCGAAAAATTTTTGAAAGAGGATGCTCAGGCACGGCACT
TTTCTGCTGAAAGCGCCACCGGAGAAGCGCTCTTGAACAAATGTCGCCGA
CTGCAGCAAGAAAATGAGTCTTTGGCCAGACGGCTGGGAGAGATGGAGAA
AGGGACAGGGGAGGACGGACTTGAAGGGGCGTTTAGAAAACAAATTGCGA
TTTTGCAGGAACAGCTAGAGGAAAGTAAGGCAAGAGCGGAGGATTTAGAC
GAAGAAAGAGGGTTGTTGAGTACCATGGTGTATGCGCTCAAAAAGCAGCT
AGCTGCGGCTGGGGTAGACGACGGTGAGGGAAGCACAGGCATGGCAGTGG
AGACTGAATGAATGTTGATGTGCTGGTACTGTTGTTGCAGGTTTGTTTCC
TCTATAACTTTTGGTCGCAGTAGGCTTACTACTACCTCCCCCCCAAAGGA
AAGACTCCGGGACAATATTTGCTGGGTACATCTGTCCACCACGATGACTA
GCCACAAGAACACGGTGGCTTTGGCAGCTCTAAGCGCAGATGATGATGAG
GAAGCAGAGGAAGACGAAGAATTGCCGGAAATATATTACAAAGCTGCTAG
ATCTTCTACACCTGACATCCAGCCAGTTTTGACCGCTTCCAGCGTACCAA
GAAAAGATGCTATCCCGGCGCCCCCATCTCTCCCTACGGATGTTCCCACT
CTTCAAAAAGCCCTCCTTTCCGCTGAGGGTAGGCTCGTCGGATTTCAAAA
TCGTGAACAAGTGTACGTTCATCAGCTTCAGGAAAAAGACGCGGAAATTT
TGGAGTTGCACCGCCATATTCAAGAATTAAGGGTCTTCCAAAGTCCACCT
GAGGCGTGGGGAAGGAAAGTGCTGGTCGACCCTGGCGTAGCTATGGAGTT
GCGCTTATTACGCGAAAAGATCGCAGAATTGGAAGCGTCCGAAAAATTTT
TGAAAGAGGATGCTCAGGCACGGCACTTTTCTGCTGAAAGCGCCACCGGA
GAAGCGCTCTTGAACAAATGTCGCCGACTGCAGCAAGAAAATGAGTCTTT
GGCCAGACGGCTGGGAGAGATGGAGAAAGGGACAGGGGAGGACGGACTTG
AAGGGGCGTTTAGAAAACAAATTGCGATTTTGCAGGAACAGCTAGAGGAA
AGTAAGGCAAGAGCGGAGGATTTAGACGAAGAAAGAGGGTTGTTGAGTAC
CATGGTGTATGCGCTCAAAAAGCAGCTAGCTGCGGCTGGGGTAGACGACG
GTGAGGGAAGCACAGGCATGGCAGTGGAGACTGAATGAATGTTGATGTGC
TGGTACTGTTGTTGCAGGTTTGTTTCCTCTATAACTTTTGGTCGCAGTAG
GCTTACTACTACCTCCCCCCCAAAGGAAAGACTCCGGGACAATATTTGCT
GGGTACATCTGTCCACCACGATGACTAGCCACAAGAACACGGTGGCTTTG
GCAGCTCTAAGCGCAGATGATGATGAGGAAGCAGAGGAAGACGAAGAATT
GCCG
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Synonyms
Publications