EWM24908.1, cds5753 (CDS) Nannochloropsis gaditana

Overview
NameEWM24908.1
Unique Namecds5753
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:789842..790057 -
Alignment locationCM002466.1:789037..789747 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24908.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100092g7.2131.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:789842..790057 -
CM002466.1supercontigCM002466.1:789037..789747 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Homology
BLAST of EWM24908.1 vs. NCBI_GenBank
Match: gi|585106536|gb|EWM24908.1| (hypothetical protein Naga_100092g7 [Nannochloropsis gaditana])

HSP 1 Score: 630.172 bits (1624), Expect = 0.000e+0
Identity = 308/308 (100.00%), Postives = 308/308 (100.00%), Query Frame = 0
Query:    1 MLMCWYCCCRFVSSITFGRSRLTTTSPPKERLRDNICWVHLSTTMTSHKNTVALAALSADDDEEAEEDEELPEIYYKAARSSTPDIQPVLTASSVPRKDAIPAPPSLPTDVPTLQKALLSAEGRLVGFQNREQVYVHQLQEKDAEILELHRHIQELRVFQSPPEAWGRKVLVDPGVAMELRLLREKIAELEASEKFLKEDAQARHFSAESATGEALLNKCRRLQQENESLARRLGEMEKGTGEDGLEGAFRKQIAILQEQLEESKARAEDLDEERGLLSTMVYALKKQLAAAGVDDGEGSTGMAVETE 308
            MLMCWYCCCRFVSSITFGRSRLTTTSPPKERLRDNICWVHLSTTMTSHKNTVALAALSADDDEEAEEDEELPEIYYKAARSSTPDIQPVLTASSVPRKDAIPAPPSLPTDVPTLQKALLSAEGRLVGFQNREQVYVHQLQEKDAEILELHRHIQELRVFQSPPEAWGRKVLVDPGVAMELRLLREKIAELEASEKFLKEDAQARHFSAESATGEALLNKCRRLQQENESLARRLGEMEKGTGEDGLEGAFRKQIAILQEQLEESKARAEDLDEERGLLSTMVYALKKQLAAAGVDDGEGSTGMAVETE
Sbjct:    1 MLMCWYCCCRFVSSITFGRSRLTTTSPPKERLRDNICWVHLSTTMTSHKNTVALAALSADDDEEAEEDEELPEIYYKAARSSTPDIQPVLTASSVPRKDAIPAPPSLPTDVPTLQKALLSAEGRLVGFQNREQVYVHQLQEKDAEILELHRHIQELRVFQSPPEAWGRKVLVDPGVAMELRLLREKIAELEASEKFLKEDAQARHFSAESATGEALLNKCRRLQQENESLARRLGEMEKGTGEDGLEGAFRKQIAILQEQLEESKARAEDLDEERGLLSTMVYALKKQLAAAGVDDGEGSTGMAVETE 308          
BLAST of EWM24908.1 vs. NCBI_GenBank
Match: gi|553190759|ref|XP_005855254.1| (pre-mrna-splicing regulator female-lethal d [Nannochloropsis gaditana CCMP526] >gi|422293811|gb|EKU21111.1| pre-mrna-splicing regulator female-lethal d [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 526.554 bits (1355), Expect = 0.000e+0
Identity = 263/264 (99.62%), Postives = 263/264 (99.62%), Query Frame = 0
Query:   45 MTSHKNTVALAALSADDDEEAEEDEELPEIYYKAARSSTPDIQPVLTASSVPRKDAIPAPPSLPTDVPTLQKALLSAEGRLVGFQNREQVYVHQLQEKDAEILELHRHIQELRVFQSPPEAWGRKVLVDPGVAMELRLLREKIAELEASEKFLKEDAQARHFSAESATGEALLNKCRRLQQENESLARRLGEMEKGTGEDGLEGAFRKQIAILQEQLEESKARAEDLDEERGLLSTMVYALKKQLAAAGVDDGEGSTGMAVETE 308
            MTSHKNTVALAALSADDDEEAEEDEELPEIYYKAARSSTPDIQPVLTASSVPRKDAIPAPPSLPTDVPTLQKALLSAEGRLVGFQNREQVYVHQLQEKDAEILELHRHIQELRVFQSPPEAWGRKVLVDPGVAMELRLLREKIAELEASEK LKEDAQARHFSAESATGEALLNKCRRLQQENESLARRLGEMEKGTGEDGLEGAFRKQIAILQEQLEESKARAEDLDEERGLLSTMVYALKKQLAAAGVDDGEGSTGMAVETE
Sbjct:    1 MTSHKNTVALAALSADDDEEAEEDEELPEIYYKAARSSTPDIQPVLTASSVPRKDAIPAPPSLPTDVPTLQKALLSAEGRLVGFQNREQVYVHQLQEKDAEILELHRHIQELRVFQSPPEAWGRKVLVDPGVAMELRLLREKIAELEASEKILKEDAQARHFSAESATGEALLNKCRRLQQENESLARRLGEMEKGTGEDGLEGAFRKQIAILQEQLEESKARAEDLDEERGLLSTMVYALKKQLAAAGVDDGEGSTGMAVETE 264          
BLAST of EWM24908.1 vs. NCBI_GenBank
Match: gi|545355485|ref|XP_005643533.1| (hypothetical protein COCSUDRAFT_68118 [Coccomyxa subellipsoidea C-169] >gi|384245495|gb|EIE18989.1| hypothetical protein COCSUDRAFT_68118 [Coccomyxa subellipsoidea C-169])

HSP 1 Score: 79.337 bits (194), Expect = 6.461e-13
Identity = 61/169 (36.09%), Postives = 87/169 (51.48%), Query Frame = 0
Query:   98 KDAIPAPPSLPTDVPTLQKALLSAEGRLVGFQNREQVYVHQLQEKDAEILELHRHIQELRVFQSPPEAWGRKVLVDPGVAMELRLLREKIAELEASE-KFLKEDAQARHFSAESATGEALLNKCRRLQQENESLARRLGEMEKGTGEDGLEGAFRKQIAILQEQLEESK 265
            ++A+P  P+ P+ V    + L   E  L   + RE      L EK+ E LEL   +   R   +P  A  R++L DP VA E   LRE+ AE +A E + L+E+ QA +FS ES  G  L+ KCR LQ ENE + R L E        G   A  +Q+A+ +  LE+ +
Sbjct:  317 QEALPGAPADPSSVRQELERLRKVEAELASMRPREAKLQTALAEKNLENLELRWRVAAAREATNPSLAQARQLLTDPAVAREFARLREE-AEAKAQEVRRLQEELQAVNFSQESKAGRLLMAKCRALQDENEDMGRDLAE--------GHVHALERQLALAKTALEDMR 476          
BLAST of EWM24908.1 vs. NCBI_GenBank
Match: gi|752861693|ref|XP_011258772.1| (PREDICTED: pre-mRNA-splicing regulator female-lethal(2)D isoform X2 [Camponotus floridanus])

HSP 1 Score: 78.5666 bits (192), Expect = 9.607e-13
Identity = 55/185 (29.73%), Postives = 102/185 (55.14%), Query Frame = 0
Query:  110 DVPTLQKALLSAEGRLVGFQNREQVYVHQLQEKDAEILELHRHIQELRVFQSPPEAWGRKVLVDPGVAMELRLLREKIAELEASEKFLKEDAQARHFSAESATGEALLNKCRRLQQENESLARRL--GEMEKGTGEDGLEGAFRKQIAILQEQLEESKARAEDLDEERGLLSTMVYALKKQLAAA 292
            D+ +L+++      + V   +RE++ V +L  K+ E+ E    I E++  Q+P  A  R  L+DP V + ++ LR+++   +   +  + +  A  F+ +S TG+ L+ KCR L QENE L R +  G + K  GE  L+ +F +++   Q +L+E     +DLDE+   + + +Y L+++L  A
Sbjct:   13 DLASLRESENKYRQQYVEASHREKILVRRLASKEQELQEYINQITEMKATQAPSAAALRSALLDPAVNILIQKLRQELITTKGKLEDTQNELSAWKFTPDSNTGKRLMAKCRLLYQENEELGRMIASGRIAKLEGELALQKSFSEEVKKSQSELDEF---LQDLDEDVEGMQSTIYFLQQELRKA 194          
BLAST of EWM24908.1 vs. NCBI_GenBank
Match: gi|1069708655|ref|XP_018312161.1| (PREDICTED: pre-mRNA-splicing regulator female-lethal(2)D isoform X2 [Trachymyrmex zeteki])

HSP 1 Score: 78.5666 bits (192), Expect = 9.631e-13
Identity = 56/199 (28.14%), Postives = 106/199 (53.27%), Query Frame = 0
Query:  102 PAPPSLPT------DVPTLQKALLSAEGRLVGFQNREQVYVHQLQEKDAEILELHRHIQELRVFQSPPEAWGRKVLVDPGVAMELRLLREKIAELEASEKFLKEDAQARHFSAESATGEALLNKCRRLQQENESLARRL--GEMEKGTGEDGLEGAFRKQIAILQEQLEESKARAEDLDEERGLLSTMVYALKKQLAAA 292
            P  P  PT      ++ +L+++      + +   +RE++ V +L  K+ E+ E    I E++  Q+P  A  R  L+DP + + ++ LR+++   +   +  + +  A  F+ +S TG+ L+ KCR L QENE L R +  G + K  GE  L+ +F +++   Q +L+E     +DLDE+   + + +Y L+++L  A
Sbjct:   43 PCHPIWPTKYCTWGELASLRESENKYRQQYIEASHREKILVRRLASKEQELQEYINQITEMKATQAPSTAALRSALLDPAINILIQKLRQELITTKGKLEDTQNELSAWKFTPDSNTGKRLMAKCRLLYQENEELGRMIASGRIAKLEGELALQKSFSEEVKKSQSELDEF---LQDLDEDVEGMQSTIYFLQQELRKA 238          
BLAST of EWM24908.1 vs. NCBI_GenBank
Match: gi|322798988|gb|EFZ20448.1| (hypothetical protein SINV_03903, partial [Solenopsis invicta])

HSP 1 Score: 78.9518 bits (193), Expect = 1.027e-12
Identity = 52/165 (31.52%), Postives = 93/165 (56.36%), Query Frame = 0
Query:  130 NREQVYVHQLQEKDAEILELHRHIQELRVFQSPPEAWGRKVLVDPGVAMELRLLREKIAELEASEKFLKEDAQARHFSAESATGEALLNKCRRLQQENESLARRL--GEMEKGTGEDGLEGAFRKQIAILQEQLEESKARAEDLDEERGLLSTMVYALKKQLAAA 292
            +RE++ V +L  K+ E+ E    I E++  Q+P  A  R  L+DP V + ++ LR+++   +   +  + +  A  F+ +S TG+ L+ KCR L QENE L R +  G + K  GE  L+ +F +++   Q +L+E     +DLDE+   + + +Y L+++L  A
Sbjct:  144 HREKILVRRLASKEQELQEYINQITEMKATQAPSAAALRSALLDPAVNVLIQKLRQELITTKGKLEDTQNELSAWKFTPDSNTGKRLMAKCRLLYQENEDLGRMIASGRIAKLEGELALQKSFSEEVKKSQSELDEF---LQDLDEDVEGMQSTIYFLQQELRKA 305          
BLAST of EWM24908.1 vs. NCBI_GenBank
Match: gi|769834025|ref|XP_011647104.1| (PREDICTED: pre-mRNA-splicing regulator WTAP isoform X1 [Pogonomyrmex barbatus] >gi|769834027|ref|XP_011647105.1| PREDICTED: pre-mRNA-splicing regulator WTAP isoform X1 [Pogonomyrmex barbatus])

HSP 1 Score: 78.5666 bits (192), Expect = 1.275e-12
Identity = 52/165 (31.52%), Postives = 94/165 (56.97%), Query Frame = 0
Query:  130 NREQVYVHQLQEKDAEILELHRHIQELRVFQSPPEAWGRKVLVDPGVAMELRLLREKIAELEASEKFLKEDAQARHFSAESATGEALLNKCRRLQQENESLARRL--GEMEKGTGEDGLEGAFRKQIAILQEQLEESKARAEDLDEERGLLSTMVYALKKQLAAA 292
            +RE++ V +L  K+ E+ E    I E++  Q+P  A  R  L+DP V + ++ LR+++   ++  +  + +  A  F+ +S TG+ L+ KCR L QENE L R +  G + K  GE  L+ +F +++   Q +L+E     +DLDE+   + + +Y L+++L  A
Sbjct:   99 HREKILVRRLASKEQELQEYINQITEMKTTQAPSAAALRSTLLDPAVNILIQKLRQELITTKSKLEDTQNELSAWKFTPDSNTGKRLMAKCRLLYQENEELGRMIASGRIAKLEGELALQKSFSEEVKKSQSELDEF---LQDLDEDVEGMQSTIYFLQQELRKA 260          
BLAST of EWM24908.1 vs. NCBI_GenBank
Match: gi|752861695|ref|XP_011258781.1| (PREDICTED: pre-mRNA-splicing regulator female-lethal(2)D isoform X3 [Camponotus floridanus])

HSP 1 Score: 78.1814 bits (191), Expect = 1.281e-12
Identity = 55/186 (29.57%), Postives = 103/186 (55.38%), Query Frame = 0
Query:  109 TDVPTLQKALLSAEGRLVGFQNREQVYVHQLQEKDAEILELHRHIQELRVFQSPPEAWGRKVLVDPGVAMELRLLREKIAELEASEKFLKEDAQARHFSAESATGEALLNKCRRLQQENESLARRL--GEMEKGTGEDGLEGAFRKQIAILQEQLEESKARAEDLDEERGLLSTMVYALKKQLAAA 292
            +D+ +L+++      + V   +RE++ V +L  K+ E+ E    I E++  Q+P  A  R  L+DP V + ++ LR+++   +   +  + +  A  F+ +S TG+ L+ KCR L QENE L R +  G + K  GE  L+ +F +++   Q +L+E     +DLDE+   + + +Y L+++L  A
Sbjct:   11 SDLASLRESENKYRQQYVEASHREKILVRRLASKEQELQEYINQITEMKATQAPSAAALRSALLDPAVNILIQKLRQELITTKGKLEDTQNELSAWKFTPDSNTGKRLMAKCRLLYQENEELGRMIASGRIAKLEGELALQKSFSEEVKKSQSELDEF---LQDLDEDVEGMQSTIYFLQQELRKA 193          
BLAST of EWM24908.1 vs. NCBI_GenBank
Match: gi|769834029|ref|XP_011647106.1| (PREDICTED: pre-mRNA-splicing regulator female-lethal(2)D isoform X2 [Pogonomyrmex barbatus])

HSP 1 Score: 78.1814 bits (191), Expect = 1.369e-12
Identity = 52/164 (31.71%), Postives = 93/164 (56.71%), Query Frame = 0
Query:  131 REQVYVHQLQEKDAEILELHRHIQELRVFQSPPEAWGRKVLVDPGVAMELRLLREKIAELEASEKFLKEDAQARHFSAESATGEALLNKCRRLQQENESLARRL--GEMEKGTGEDGLEGAFRKQIAILQEQLEESKARAEDLDEERGLLSTMVYALKKQLAAA 292
            RE++ V +L  K+ E+ E    I E++  Q+P  A  R  L+DP V + ++ LR+++   ++  +  + +  A  F+ +S TG+ L+ KCR L QENE L R +  G + K  GE  L+ +F +++   Q +L+E     +DLDE+   + + +Y L+++L  A
Sbjct:   33 REKILVRRLASKEQELQEYINQITEMKTTQAPSAAALRSTLLDPAVNILIQKLRQELITTKSKLEDTQNELSAWKFTPDSNTGKRLMAKCRLLYQENEELGRMIASGRIAKLEGELALQKSFSEEVKKSQSELDEF---LQDLDEDVEGMQSTIYFLQQELRKA 193          
BLAST of EWM24908.1 vs. NCBI_GenBank
Match: gi|752861689|ref|XP_011258753.1| (PREDICTED: pre-mRNA-splicing regulator WTAP isoform X1 [Camponotus floridanus] >gi|752861691|ref|XP_011258763.1| PREDICTED: pre-mRNA-splicing regulator WTAP isoform X1 [Camponotus floridanus] >gi|307189942|gb|EFN74178.1| Pre-mRNA-splicing regulator female-lethal(2)D [Camponotus floridanus])

HSP 1 Score: 78.1814 bits (191), Expect = 1.374e-12
Identity = 55/185 (29.73%), Postives = 102/185 (55.14%), Query Frame = 0
Query:  110 DVPTLQKALLSAEGRLVGFQNREQVYVHQLQEKDAEILELHRHIQELRVFQSPPEAWGRKVLVDPGVAMELRLLREKIAELEASEKFLKEDAQARHFSAESATGEALLNKCRRLQQENESLARRL--GEMEKGTGEDGLEGAFRKQIAILQEQLEESKARAEDLDEERGLLSTMVYALKKQLAAA 292
            D+ +L+++      + V   +RE++ V +L  K+ E+ E    I E++  Q+P  A  R  L+DP V + ++ LR+++   +   +  + +  A  F+ +S TG+ L+ KCR L QENE L R +  G + K  GE  L+ +F +++   Q +L+E     +DLDE+   + + +Y L+++L  A
Sbjct:   79 DLASLRESENKYRQQYVEASHREKILVRRLASKEQELQEYINQITEMKATQAPSAAALRSALLDPAVNILIQKLRQELITTKGKLEDTQNELSAWKFTPDSNTGKRLMAKCRLLYQENEELGRMIASGRIAKLEGELALQKSFSEEVKKSQSELDEF---LQDLDEDVEGMQSTIYFLQQELRKA 260          
The following BLAST results are available for this feature:
BLAST of EWM24908.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106536|gb|EWM24908.1|0.000e+0100.00hypothetical protein Naga_100092g7 [Nannochloropsi... [more]
gi|553190759|ref|XP_005855254.1|0.000e+099.62pre-mrna-splicing regulator female-lethal d [Nanno... [more]
gi|545355485|ref|XP_005643533.1|6.461e-1336.09hypothetical protein COCSUDRAFT_68118 [Coccomyxa s... [more]
gi|752861693|ref|XP_011258772.1|9.607e-1329.73PREDICTED: pre-mRNA-splicing regulator female-leth... [more]
gi|1069708655|ref|XP_018312161.1|9.631e-1328.14PREDICTED: pre-mRNA-splicing regulator female-leth... [more]
gi|322798988|gb|EFZ20448.1|1.027e-1231.52hypothetical protein SINV_03903, partial [Solenops... [more]
gi|769834025|ref|XP_011647104.1|1.275e-1231.52PREDICTED: pre-mRNA-splicing regulator WTAP isofor... [more]
gi|752861695|ref|XP_011258781.1|1.281e-1229.57PREDICTED: pre-mRNA-splicing regulator female-leth... [more]
gi|769834029|ref|XP_011647106.1|1.369e-1231.71PREDICTED: pre-mRNA-splicing regulator female-leth... [more]
gi|752861689|ref|XP_011258753.1|1.374e-1229.73PREDICTED: pre-mRNA-splicing regulator WTAP isofor... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5768rna5768Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications