rna5762, rna5762 (mRNA) Nannochloropsis gaditana

Overview
Namerna5762
Unique Namerna5762
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length534
Alignment locationCM002466.1:775912..777612 -

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Properties
Property NameValue
Productuncharacterized protein
Orig transcript idgnl|cribi|Naga_100092g2.2144.mrna
Orig protein idgnl|cribi|Naga_100092g2.2144
GbkeymRNA
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:775912..777612 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100092g2gene5567Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5762rna5762-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24921.1cds5747Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5762 ID=rna5762|Name=rna5762|organism=Nannochloropsis gaditana|type=mRNA|length=534bp
ATGTCCTCATCAAAGCTAGTCCGCCCACCCCGTCTGTTGGGCTTTGGCGG
CCGACCCTACAATTTTTTTGACAGAGATTCCCTTCCTCGGAATCTCTCCT
CTGTTTTGAAAGGCAATTTGGCCTCGGCGTTGCTCGTGGAAGGCGCCTTG
ATCTTCGCAGACGACCAGGGCCACATCACTTTCACGGACGCCGACCTCCA
CGTCTCCCTTCAACACCGCATTCTGTCTCCTCCTCCTTCCCCCCCTCCCT
CCCCCTCCAATCCTCCCTCCCTCCTCCTCGCCCGCTCCCTCCAGTCCCCT
CCCCTCCTCGTGGTCGCCGGCCTCCACGGCCCAGGGGCGCAAGTTGTTAT
CCACACCTGGGTGGGAAGCAAAGTCTCAGCGCCCTCCAACACCATCGCCG
TCCTTTCCGCCCTTCAGGCCCTGGCTCCGGCTTCCGAGAAGATCGGATCG
ACGTCCCCCTTCCTGCCCTTCTGTTGCGTCCGCCTTTACCCGGGCTCGGG
CCGGGGGAAGCGGTGGCGGCGCCCAGACCCGTGA
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protein sequence of rna5762

>rna5762-protein ID=rna5762-protein|Name=rna5762|organism=Nannochloropsis gaditana|type=polypeptide|length=330bp
MKLRPIVSDRIFRHLLLTLVLLASLLPGIAFSFKLGIIPSGPSSPHPISV
TRSPRTAVASTTASTDTGTLTSNSHVQTKKRRREKATGLGKIRPVLHALQ
QTASRAAPPGSTRRSLVKKFARGVLFLPPLFLGGALNIAAPSGAMAIAPA
GVAAVDKTPGRYKNVAMGSMVEPRPRSASGVDERVKQEVLQTTQEWLQTV
TSNRATASAETAALYASDAVLWGTVSEELRVNPAEIRSYFDFFAALPGLR
VAAYQPYVRIFGTGNEGETAINDGYYVFAWRGPDGREVQKHARYSFVYRK
EGGKWMIVDHHSSLLPTAPAGLAKATTVVM
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mRNA from alignment at CM002466.1:775912..777612-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5762 ID=rna5762|Name=rna5762|organism=Nannochloropsis gaditana|type=mRNA|length=1701bp|location=Sequence derived from alignment at CM002466.1:775912..777612- (Nannochloropsis gaditana)
TTAGCGTGGGTGTCTCCTCACATCGTCCATCTTCCCGCCCGATCAACCCC
TTTCCACCAGGCACGGGGCAGGCACCGTCAGGAAGATGAAGCTCCGGCCA
ATAGTCTCCGATAGAATTTTCAGGCATTTATTGCTGACCTTGGTTCTCCT
TGCCTCCCTTTTACCCGGCATCGCCTTTTCCTTCAAATTGGGCATCATCC
CTTCGGGCCCTAGGTACGCGAAAAGCATCTGAATCAGTCTCGACATACGC
CATCATTTTATATCATTTTGATTGGAGTGTCAATCTTCTTTGTGCATCTT
GATGCGCTTTCCAACAGTATAGGGATATTGACAAATCTGTCTGTCGATCA
ACCAGATTTCTACCTTAGTAAGACACACATGCTCTTCCTTCTCGAAGCCT
TCCCACTTTACCCTTCCAGTAACCTCTCTCTTGATGCGCCATCGCGTGGT
GCTTTGGAGCGTCTCGGATTCCAAGTCCTTCGCGTTTGGAACCTCGAACA
TCCCTGACGCACTTCTCCTCTCCAATTGTCCGTAAAATCAGTTCCCCCCA
CCCTATCAGTGTAACGCGGTCCCCGCGAACCGCCGTGGCCTCGACCACCG
CCAGCACAGACACTGGCACCCTCACCAGCAATAGTCATGTTCAAACGAAA
AAGAGACGTCGTGAGAAGGCCACCGGGCTCGGCAAGATCAGGCCTGTTTT
ACATGCACTGCAACAGACGGCCTCACGAGCGGCCCCGCCCGGCTCCACGC
GTCGCAGTCTCGTCAAAAAGTTTGCCCGAGGGGTACTTTTCCTCCCCCCG
CTTTTTTTAGGCGGTGCTCTCAACATCGCTGCTCCTTCTGGTGCGATGGC
CATTGCACCGGCTGGTGTGGCAGCTGTAGACAAGACTCCTGGCAGATACA
AAAACGTCGCGATGGGATCCATGGTCGAACCTCGGCCACGCAGTGCGTCA
GGCGTGGACGAGCGGGTCAAGCAGGAAGTCCTGCAAACTACTCAAGAATG
GCTTCAGACGGTCACCTCGAACCGCGCAACGGCTTCGGCGGAAACGGCCG
CCTTGTATGCTTCGGACGCCGTGTTGTGGGGAACGGTTTCGGAGGAACTT
CGGGTCAATCCCGCGGAAATTCGGTCGTATTTTGATTTTTTTGCCGCACT
CCCTGGATTGAGGGTGGCAGCCTATCAACCTTACGTAAGGATATTCGGAA
CGGGAAATGAAGGAGAGACCGCCATCAACGACGGGTACTACGTCTTTGCG
TGGCGGGGCCCGGACGGCCGTGAGGTGCAGAAGCACGCACGGTATTCGTT
TGTGTACCGGAAAGAGGGGGGAAAATGGATGATTGTTGACCACCACTCAT
CCTTGTTGCCGACTGCTCCTGCAGGGCTTGCGAAGGCGACGACGGTGGTG
ATGTGATGGGAGGAAGACCAGGCGGGGGCCCAACAAAGACGAGAAGGAGG
GAAAAACTCGGCGCACAAAATGCCGAGGATGGATTAATTGTTGTCATGGC
GAGACATAAATAGTATATGGAGTTGAATTTTGGTGAAGTGTAGATGTGTA
CCATAAGGGTGGGATGCGGAGAACGATATCGGAATAAGGATGGAAGGGGA
GGTTGAGCCCCGTGTGCATAAACGTTGTGGTAGAGTTTATCTCCCGTACG
ACGCAAAACAAACTTCGGCGCGTGGCTACCCCACACACCATTTTCATCCC
A
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Coding sequence (CDS) from alignment at CM002466.1:775912..777612-

>rna5762 ID=rna5762|Name=rna5762|organism=Nannochloropsis gaditana|type=CDS|length=1986bp|location=Sequence derived from alignment at CM002466.1:775912..777612- (Nannochloropsis gaditana)
TTCCCCCCACCCTATCAGTGTAACGCGGTCCCCGCGAACCGCCGTGGCCT
CGACCACCGCCAGCACAGACACTGGCACCCTCACCAGCAATAGTCATGTT
CAAACGAAAAAGAGACGTCGTGAGAAGGCCACCGGGCTCGGCAAGATCAG
GCCTGTTTTACATGCACTGCAACAGACGGCCTCACGAGCGGCCCCGCCCG
GCTCCACGCGTCGCAGTCTCGTCAAAAAGTTTGCCCGAGGGGTACTTTTC
CTCCCCCCGCTTTTTTTAGGCGGTGCTCTCAACATCGCTGCTCCTTCTGG
TGCGATGGCCATTGCACCGGCTGGTGTGGCAGCTGTAGACAAGACTCCTG
GCAGATACAAAAACGTCGCGATGGGATCCATGGTCGAACCTCGGCCACGC
AGTGCGTCAGGCGTGGACGAGCGGGTCAAGCAGGAAGTCCTGCAAACTAC
TCAAGAATGGCTTCAGACGGTCACCTCGAACCGCGCAACGGCTTCGGCGG
AAACGGCCGCCTTGTATGCTTCGGACGCCGTGTTGTGGGGAACGGTTTCG
GAGGAACTTCGGGTCAATCCCGCGGAAATTCGGTCGTATTTTGATTTTTT
TGCCGCACTCCCTGGATTGAGGGTGGCAGCCTATCAACCTTACGTAAGGA
TATTCGGAACGGGAAATGAAGGAGAGACCGCCATCAACGACGGGTACTAC
GTCTTTGCGTGGCGGGGCCCGGACGGCCGTGAGGTGCAGAAGCACGCACG
GTATTCGTTTGTGTACCGGAAAGAGGGGGGAAAATGGATGATTGTTGACC
ACCACTCATCCTTGTTGCCGACTGCTCCTGCAGGGCTTGCGAAGGCGACG
ACGGTGGTGATGTGAATGAAGCTCCGGCCAATAGTCTCCGATAGAATTTT
CAGGCATTTATTGCTGACCTTGGTTCTCCTTGCCTCCCTTTTACCCGGCA
TCGCCTTTTCCTTCAAATTGGGCATCATCCCTTCGGGCCCTAGTTCCCCC
CACCCTATCAGTGTAACGCGGTCCCCGCGAACCGCCGTGGCCTCGACCAC
CGCCAGCACAGACACTGGCACCCTCACCAGCAATAGTCATGTTCAAACGA
AAAAGAGACGTCGTGAGAAGGCCACCGGGCTCGGCAAGATCAGGCCTGTT
TTACATGCACTGCAACAGACGGCCTCACGAGCGGCCCCGCCCGGCTCCAC
GCGTCGCAGTCTCGTCAAAAAGTTTGCCCGAGGGGTACTTTTCCTCCCCC
CGCTTTTTTTAGGCGGTGCTCTCAACATCGCTGCTCCTTCTGGTGCGATG
GCCATTGCACCGGCTGGTGTGGCAGCTGTAGACAAGACTCCTGGCAGATA
CAAAAACGTCGCGATGGGATCCATGGTCGAACCTCGGCCACGCAGTGCGT
CAGGCGTGGACGAGCGGGTCAAGCAGGAAGTCCTGCAAACTACTCAAGAA
TGGCTTCAGACGGTCACCTCGAACCGCGCAACGGCTTCGGCGGAAACGGC
CGCCTTGTATGCTTCGGACGCCGTGTTGTGGGGAACGGTTTCGGAGGAAC
TTCGGGTCAATCCCGCGGAAATTCGGTCGTATTTTGATTTTTTTGCCGCA
CTCCCTGGATTGAGGGTGGCAGCCTATCAACCTTACGTAAGGATATTCGG
AACGGGAAATGAAGGAGAGACCGCCATCAACGACGGGTACTACGTCTTTG
CGTGGCGGGGCCCGGACGGCCGTGAGGTGCAGAAGCACGCACGGTATTCG
TTTGTGTACCGGAAAGAGGGGGGAAAATGGATGATTGTTGACCACCACTC
ATCCTTGTTGCCGACTGCTCCTGCAGGGCTTGCGAAGGCGACGACGGTGG
TGATGTGAATGAAGCTCCGGCCAATAGTCTCCGATAGAATTTTCAGGCAT
TTATTGCTGACCTTGGTTCTCCTTGCCTCCCTTTTACCCGGCATCGCCTT
TTCCTTCAAATTGGGCATCATCCCTTCGGGCCCTAG
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Synonyms
Publications