EWM24921.1, cds5747 (CDS) Nannochloropsis gaditana

Overview
NameEWM24921.1
Unique Namecds5747
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:777400..777527 -
Alignment locationCM002466.1:776207..777071 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24921.1
Productuncharacterized protein
Orig transcript idgnl|cribi|Naga_100092g2.2144.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:777400..777527 -
CM002466.1supercontigCM002466.1:776207..777071 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0006464cellular protein modification process
Vocabulary: INTERPRO
TermDefinition
IPR027843DUF4440
Homology
BLAST of EWM24921.1 vs. NCBI_GenBank
Match: gi|585106549|gb|EWM24921.1| (uncharacterized protein Naga_100092g2 [Nannochloropsis gaditana])

HSP 1 Score: 667.922 bits (1722), Expect = 0.000e+0
Identity = 330/330 (100.00%), Postives = 330/330 (100.00%), Query Frame = 0
Query:    1 MKLRPIVSDRIFRHLLLTLVLLASLLPGIAFSFKLGIIPSGPSSPHPISVTRSPRTAVASTTASTDTGTLTSNSHVQTKKRRREKATGLGKIRPVLHALQQTASRAAPPGSTRRSLVKKFARGVLFLPPLFLGGALNIAAPSGAMAIAPAGVAAVDKTPGRYKNVAMGSMVEPRPRSASGVDERVKQEVLQTTQEWLQTVTSNRATASAETAALYASDAVLWGTVSEELRVNPAEIRSYFDFFAALPGLRVAAYQPYVRIFGTGNEGETAINDGYYVFAWRGPDGREVQKHARYSFVYRKEGGKWMIVDHHSSLLPTAPAGLAKATTVVM 330
            MKLRPIVSDRIFRHLLLTLVLLASLLPGIAFSFKLGIIPSGPSSPHPISVTRSPRTAVASTTASTDTGTLTSNSHVQTKKRRREKATGLGKIRPVLHALQQTASRAAPPGSTRRSLVKKFARGVLFLPPLFLGGALNIAAPSGAMAIAPAGVAAVDKTPGRYKNVAMGSMVEPRPRSASGVDERVKQEVLQTTQEWLQTVTSNRATASAETAALYASDAVLWGTVSEELRVNPAEIRSYFDFFAALPGLRVAAYQPYVRIFGTGNEGETAINDGYYVFAWRGPDGREVQKHARYSFVYRKEGGKWMIVDHHSSLLPTAPAGLAKATTVVM
Sbjct:    1 MKLRPIVSDRIFRHLLLTLVLLASLLPGIAFSFKLGIIPSGPSSPHPISVTRSPRTAVASTTASTDTGTLTSNSHVQTKKRRREKATGLGKIRPVLHALQQTASRAAPPGSTRRSLVKKFARGVLFLPPLFLGGALNIAAPSGAMAIAPAGVAAVDKTPGRYKNVAMGSMVEPRPRSASGVDERVKQEVLQTTQEWLQTVTSNRATASAETAALYASDAVLWGTVSEELRVNPAEIRSYFDFFAALPGLRVAAYQPYVRIFGTGNEGETAINDGYYVFAWRGPDGREVQKHARYSFVYRKEGGKWMIVDHHSSLLPTAPAGLAKATTVVM 330          
BLAST of EWM24921.1 vs. NCBI_GenBank
Match: gi|585106548|gb|EWM24920.1| (uncharacterized protein Naga_100092g2 [Nannochloropsis gaditana])

HSP 1 Score: 386.341 bits (991), Expect = 1.589e-133
Identity = 186/186 (100.00%), Postives = 186/186 (100.00%), Query Frame = 0
Query:  145 MAIAPAGVAAVDKTPGRYKNVAMGSMVEPRPRSASGVDERVKQEVLQTTQEWLQTVTSNRATASAETAALYASDAVLWGTVSEELRVNPAEIRSYFDFFAALPGLRVAAYQPYVRIFGTGNEGETAINDGYYVFAWRGPDGREVQKHARYSFVYRKEGGKWMIVDHHSSLLPTAPAGLAKATTVVM 330
            MAIAPAGVAAVDKTPGRYKNVAMGSMVEPRPRSASGVDERVKQEVLQTTQEWLQTVTSNRATASAETAALYASDAVLWGTVSEELRVNPAEIRSYFDFFAALPGLRVAAYQPYVRIFGTGNEGETAINDGYYVFAWRGPDGREVQKHARYSFVYRKEGGKWMIVDHHSSLLPTAPAGLAKATTVVM
Sbjct:    1 MAIAPAGVAAVDKTPGRYKNVAMGSMVEPRPRSASGVDERVKQEVLQTTQEWLQTVTSNRATASAETAALYASDAVLWGTVSEELRVNPAEIRSYFDFFAALPGLRVAAYQPYVRIFGTGNEGETAINDGYYVFAWRGPDGREVQKHARYSFVYRKEGGKWMIVDHHSSLLPTAPAGLAKATTVVM 186          
BLAST of EWM24921.1 vs. NCBI_GenBank
Match: gi|553185748|ref|XP_005854298.1| (putative protein conserved in bacteria with a cystatin-like fold containing protein [Nannochloropsis gaditana CCMP526] >gi|553190747|ref|XP_005855250.1| putative protein conserved in bacteria with a cystatin-like fold containing protein [Nannochloropsis gaditana CCMP526] >gi|422293807|gb|EKU21107.1| putative protein conserved in bacteria with a cystatin-like fold containing protein [Nannochloropsis gaditana CCMP526] >gi|422294759|gb|EKU22059.1| putative protein conserved in bacteria with a cystatin-like fold containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 381.719 bits (979), Expect = 1.030e-131
Identity = 184/186 (98.92%), Postives = 185/186 (99.46%), Query Frame = 0
Query:  145 MAIAPAGVAAVDKTPGRYKNVAMGSMVEPRPRSASGVDERVKQEVLQTTQEWLQTVTSNRATASAETAALYASDAVLWGTVSEELRVNPAEIRSYFDFFAALPGLRVAAYQPYVRIFGTGNEGETAINDGYYVFAWRGPDGREVQKHARYSFVYRKEGGKWMIVDHHSSLLPTAPAGLAKATTVVM 330
            MAIAPAGVAAVDKTPGRYKNVAMGSMVEPRPRSASGVDERVKQEVLQTTQ+WLQTVTSNRATASAETAALYASDAVLWGTVSEELRVNPAEIRSYFDFFAALPGLRVAAYQPYVRIFGTGNEGETAINDGYYVFAWRGPDGREVQKHARYSFVYRKEG KWMIVDHHSSLLPTAPAGLAKATTVVM
Sbjct:    1 MAIAPAGVAAVDKTPGRYKNVAMGSMVEPRPRSASGVDERVKQEVLQTTQKWLQTVTSNRATASAETAALYASDAVLWGTVSEELRVNPAEIRSYFDFFAALPGLRVAAYQPYVRIFGTGNEGETAINDGYYVFAWRGPDGREVQKHARYSFVYRKEGEKWMIVDHHSSLLPTAPAGLAKATTVVM 186          
BLAST of EWM24921.1 vs. NCBI_GenBank
Match: gi|553187201|ref|XP_005854563.1| (putative protein conserved in bacteria with a cystatin-like fold containing protein [Nannochloropsis gaditana CCMP526] >gi|553188032|ref|XP_005854721.1| putative protein conserved in bacteria with a cystatin-like fold containing protein [Nannochloropsis gaditana CCMP526] >gi|422294334|gb|EKU21634.1| putative protein conserved in bacteria with a cystatin-like fold containing protein [Nannochloropsis gaditana CCMP526] >gi|422294494|gb|EKU21794.1| putative protein conserved in bacteria with a cystatin-like fold containing protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 175.252 bits (443), Expect = 1.804e-50
Identity = 84/148 (56.76%), Postives = 108/148 (72.97%), Query Frame = 0
Query:  183 ERVKQEVLQTTQEWLQTVTSNRATASAETAALYASDAVLWGTVSEELRVNPAEIRSYFDFFAALPGLRVAAYQPYVRIFGTGNEGETAINDGYYVFAWRGPDGREVQKHARYSFVYRKE--GGKWMIVDHHSSLLPTAPAGLAKATTV 328
            ++V  EV  TT++WL+TVT  + T+ AETAALYA D VLW TVS ELRVNP EIR YFD FA LP L+V+ Y+PY+R++     G+ A+NDGYY   +  P+G++V K ARY FVY+++   G W I+DHHSS +P APAGL KATTV
Sbjct:   43 KQVVAEVAATTEKWLETVTGQKPTSPAETAALYAKDGVLWATVSTELRVNPKEIRDYFDVFARLPNLKVSDYKPYIRVY-----GDIALNDGYYTVTFDSPEGKKVTK-ARYVFVYKRDEASGAWEIIDHHSSAMPVAPAGLKKATTV 184          
BLAST of EWM24921.1 vs. NCBI_GenBank
Match: gi|585112142|gb|EWM29571.1| (uncharacterized protein Naga_100006g11 [Nannochloropsis gaditana])

HSP 1 Score: 174.866 bits (442), Expect = 1.593e-46
Identity = 84/148 (56.76%), Postives = 108/148 (72.97%), Query Frame = 0
Query:  183 ERVKQEVLQTTQEWLQTVTSNRATASAETAALYASDAVLWGTVSEELRVNPAEIRSYFDFFAALPGLRVAAYQPYVRIFGTGNEGETAINDGYYVFAWRGPDGREVQKHARYSFVYRKE--GGKWMIVDHHSSLLPTAPAGLAKATTV 328
            ++V  EV  TT++WL+TVT  + T+ AETAALYA D VLW TVS ELRVNP EIR YFD FA LP L+V+ Y+PY+R++     G+ A+NDGYY   +  P+G++V K ARY FVY+++   G W I+DHHSS +P APAGL KATTV
Sbjct:  413 KQVVAEVAATTEKWLETVTGQKPTSPAETAALYAKDGVLWATVSTELRVNPKEIRDYFDVFARLPNLKVSDYKPYIRVY-----GDIALNDGYYTVTFDSPEGKKVTK-ARYVFVYKRDEASGAWEIIDHHSSAMPVAPAGLKKATTV 554          
BLAST of EWM24921.1 vs. NCBI_GenBank
Match: gi|299470974|emb|CBN79958.1| (imm downregulated 3 [Ectocarpus siliculosus])

HSP 1 Score: 145.206 bits (365), Expect = 2.024e-38
Identity = 70/138 (50.72%), Postives = 91/138 (65.94%), Query Frame = 0
Query:  186 KQEVLQTTQEWLQTVTSNRATASAETAALYASDAVLWGTVSEELRVNPAEIRSYFDFFAALPGLRVAAYQPY-VRIFGTGNEGETAINDGYYVFAWRGPDGREVQKHARYSFVYRKEGGKWMIVDHHSSLLPTAPAGL 322
            ++ V   T+ W  TVTSN   A  +TAA+YA DA+ WGTVSEE+R  PA +  YFDFFA +P L + AY P   RI      G+ AI+ G Y FAW G DG   +  AR++F YR+E GKW++++HHSS +PTAPAGL
Sbjct:   80 QKAVDAATRNWRDTVTSNTEDAPKKTAAIYADDALFWGTVSEEVRNTPAHVYDYFDFFARMPKLSMVAYDPAPPRI-----HGDFAIHAGAYTFAWAGADGAMTETRARFTFAYRRENGKWVMIEHHSSAMPTAPAGL 212          
BLAST of EWM24921.1 vs. NCBI_GenBank
Match: gi|1186534701|ref|WP_085435675.1| (DUF4440 domain-containing protein [unicellular cyanobacterium SU2])

HSP 1 Score: 144.05 bits (362), Expect = 3.044e-38
Identity = 75/151 (49.67%), Postives = 95/151 (62.91%), Query Frame = 0
Query:  175 PRSASGVDERVKQEVLQTTQEWLQTVTSNRATASAETAALYASDAVLWGTVSEELRVNPAEIRSYFDFFAALPGLRVAAYQPYVRIFGTGNEGETAINDGYYVFAWRGPDGREVQKHARYSFVYRKEG-GKWMIVDHHSSLLPTAPAGLAK 324
            P S+    E+ ++EV + T  WL TVTS       E  ALYA D VLWGTVSE++R  PAEIR YF +FA LP L V++Y+  VR+    ++   AIN GYY F +   DGR  +  ARYSFVY+K+G  KW I++HHSS LP AP  L K
Sbjct:   40 PLSSFAQMEKAEKEVAEMTDIWLNTVTSGSEEVVDEVVALYAEDGVLWGTVSEQVRDTPAEIRDYFQYFAKLPDLSVSSYKGCVRM----HDDNLAINTGYYTFTY-SKDGRTKEVPARYSFVYQKDGNNKWEIIEHHSSALPEAPEALQK 185          
BLAST of EWM24921.1 vs. NCBI_GenBank
Match: gi|494516485|ref|WP_007305943.1| (DUF4440 domain-containing protein [Crocosphaera watsonii] >gi|67855122|gb|EAM50388.1| similar to Uncharacterized protein conserved in bacteria with a cystatin-like fold [Crocosphaera watsonii WH 8501])

HSP 1 Score: 142.124 bits (357), Expect = 1.677e-37
Identity = 76/156 (48.72%), Postives = 97/156 (62.18%), Query Frame = 0
Query:  170 MVEPRPRSASGVDERVKQEVLQTTQEWLQTVTSNRATASAETAALYASDAVLWGTVSEELRVNPAEIRSYFDFFAALPGLRVAAYQPYVRIFGTGNEGETAINDGYYVFAWRGPDGREVQKHARYSFVYRKEG-GKWMIVDHHSSLLPTAPAGLAK 324
            ++   P S     E+ ++EV  TT  WL TVTS       E  ALY  D +LWGTVSE++R NPAEIR YF++FA LP L V++Y+  VR   T NE   AIN GYY F +R  DG  ++  ARYSFVY+K G  +W I++HHSS LP AP  L +
Sbjct:   35 LIAISPLSCFAETEKPEKEVADTTDIWLNTVTSGSEEVVDEVVALYGKDGILWGTVSEQVRDNPAEIRDYFEYFAKLPELSVSSYKGCVR---TYNEN-LAINIGYYTFTFR-KDGETIEVPARYSFVYQKNGNNQWEIIEHHSSALPQAPEALHQ 185          
BLAST of EWM24921.1 vs. NCBI_GenBank
Match: gi|546230467|ref|WP_021834240.1| (DUF4440 domain-containing protein [Crocosphaera watsonii] >gi|543432644|emb|CCQ59796.1| hypothetical protein CWATWH0401_2416 [Crocosphaera watsonii WH 0401] >gi|543521056|emb|CCQ59465.1| hypothetical protein CWATWH0005_2445 [Crocosphaera watsonii WH 0005] >gi|543539485|emb|CCQ65175.1| hypothetical protein CWATWH0402_4543 [Crocosphaera watsonii WH 0402])

HSP 1 Score: 141.354 bits (355), Expect = 3.352e-37
Identity = 76/156 (48.72%), Postives = 97/156 (62.18%), Query Frame = 0
Query:  170 MVEPRPRSASGVDERVKQEVLQTTQEWLQTVTSNRATASAETAALYASDAVLWGTVSEELRVNPAEIRSYFDFFAALPGLRVAAYQPYVRIFGTGNEGETAINDGYYVFAWRGPDGREVQKHARYSFVYRKEG-GKWMIVDHHSSLLPTAPAGLAK 324
            ++   P S     E+ ++EV  TT  WL TVTS       E  ALY  D +LWGTVSE++R NPAEIR YF++FA LP L V++Y+  VR   T NE   AIN GYY F +R  DG  ++  ARYSFVY+K G  +W I++HHSS LP AP  L +
Sbjct:   35 LIAISPLSGFAETEKPEKEVADTTDIWLNTVTSGSEEVVDEVVALYGKDGILWGTVSEQVRDNPAEIRDYFEYFAKLPELSVSSYKGCVR---TYNEN-LAINIGYYTFTFR-KDGETIEVPARYSFVYQKNGNNQWEIIEHHSSALPQAPEALHQ 185          
BLAST of EWM24921.1 vs. NCBI_GenBank
Match: gi|546217746|ref|WP_021831435.1| (hypothetical protein [Crocosphaera watsonii] >gi|543513664|emb|CCQ52531.1| hypothetical protein CWATWH8502_4419 [Crocosphaera watsonii WH 8502])

HSP 1 Score: 140.969 bits (354), Expect = 4.615e-37
Identity = 76/156 (48.72%), Postives = 97/156 (62.18%), Query Frame = 0
Query:  170 MVEPRPRSASGVDERVKQEVLQTTQEWLQTVTSNRATASAETAALYASDAVLWGTVSEELRVNPAEIRSYFDFFAALPGLRVAAYQPYVRIFGTGNEGETAINDGYYVFAWRGPDGREVQKHARYSFVYRKEG-GKWMIVDHHSSLLPTAPAGLAK 324
            ++   P S     E+ ++EV  TT  WL TVTS       E  ALY  D +LWGTVSE++R NPAEIR YF++FA LP L V++Y+  VR   T NE   AIN GYY F +R  DG  ++  ARYSFVY+K G  +W I++HHSS LP AP  L +
Sbjct:   35 LIAISPLSGFAETEKPEKEVADTTDIWLNTVTSGSEEVVDEVVALYGKDGILWGTVSEQVRDNPAEIRDYFEYFAKLPELSVSSYKGCVR---TYNEN-LAINIGYYTFTFR-KDGETIEVPARYSFVYQKNGNNQWEIIEHHSSALPQAPEALHQ 185          
The following BLAST results are available for this feature:
BLAST of EWM24921.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106549|gb|EWM24921.1|0.000e+0100.00uncharacterized protein Naga_100092g2 [Nannochloro... [more]
gi|585106548|gb|EWM24920.1|1.589e-133100.00uncharacterized protein Naga_100092g2 [Nannochloro... [more]
gi|553185748|ref|XP_005854298.1|1.030e-13198.92putative protein conserved in bacteria with a cyst... [more]
gi|553187201|ref|XP_005854563.1|1.804e-5056.76putative protein conserved in bacteria with a cyst... [more]
gi|585112142|gb|EWM29571.1|1.593e-4656.76uncharacterized protein Naga_100006g11 [Nannochlor... [more]
gi|299470974|emb|CBN79958.1|2.024e-3850.72imm downregulated 3 [Ectocarpus siliculosus][more]
gi|1186534701|ref|WP_085435675.1|3.044e-3849.67DUF4440 domain-containing protein [unicellular cya... [more]
gi|494516485|ref|WP_007305943.1|1.677e-3748.72DUF4440 domain-containing protein [Crocosphaera wa... [more]
gi|546230467|ref|WP_021834240.1|3.352e-3748.72DUF4440 domain-containing protein [Crocosphaera wa... [more]
gi|546217746|ref|WP_021831435.1|4.615e-3748.72hypothetical protein [Crocosphaera watsonii] >gi|5... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5762rna5762Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications