rna5761, rna5761 (mRNA) Nannochloropsis gaditana

Overview
Namerna5761
Unique Namerna5761
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1627
Alignment locationCM002466.1:774418..775436 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100092g1.2132.mrna
Orig protein idgnl|cribi|Naga_100092g1.2132
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:774418..775436 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100092g1gene5566Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5761rna5761-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24909.1cds5746Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5761 ID=rna5761|Name=rna5761|organism=Nannochloropsis gaditana|type=mRNA|length=1627bp
GAGGGAGGGGGATGTCTCTAGCCAGGAAGGGGGCGGGAAAAACGGGAAAA
GCGGACAGGCCGCGGGCCCAAGCCGCAACCCGGACTTGGACAAGCTGTAC
GTGGTGCTGGACGATGCCCCCCCCCCCTCTACCTCCAAGGGGGGGACTGC
TTCGGCCTCTCCCCTCTCTCCCTCCTCCCTTCCCTCCAGCGCCATGCCTG
CAGCCCCCTCCCTCCCCACAGACAGCACCCCCTTCCCCTCCGCCTTGCTC
TCCCCCTTCCTGACTGCCCCTTCCTCCGGCTCGGGGGGGGGTCTTCCTCT
TCGACACCGCCTCCTCCCCGCCAACCTTCTCCCTCCTCGTCCTCGACCAA
TTCGGTGCCTCATACGGCTGCGCGGCCCTCGACCCCCTCACCCAGGACCT
TCTCCTCGGCCGCCCCGACGCCCTCTACTTCTACAGCGAGCACGACGGCC
GGAAGGGGGCTCTCGGCTTTCAAATCCATCAGCGTCTCGCTGCCCTCGGT
CCCTCCCCCTCCTCCAACCCCTCCTCCTCCTCCTCCTCTTCCTCGTCCTC
CTCCTCCTCCTCCGTCCTCGTCGCCTCCAGGGATGAGGTCTCGGGCCGTA
CCACCCTCCACATTTACGATCTCAAGAACAAATTCGTGGCTTTTCACACC
ACCCTCGCTCCCGATCAGAAGGTCCTCGCCCTCCTCTCCCACCGCTCCCT
CGCCTACGTCCTCACCTCCCAAGGACTGGTCCTCCGCTTGCGTGAGAAGA
CCACCGCGGCCAAGCTCAAGCTCCTGGTCCAGGACATGAAGCTCTTCCCC
GTGGCCATCAAGCTTGCCTATTCCTGCAACTACCCTCTGGCTCAGATCAT
GGAGATTTACCGAAGATACGCAGACCATTTGTACGAAAAGAAGCGGGCTT
ACGACGAAAGTGTGCAGCAGTACATCCACACGATCGGCTACTTGGATCCC
TCCTACGTCATCGCCCGTTTCCTCGACCCGCAGCGCATCCACAATTTGAC
GGTCTACCTGGAGGCTTTGCACCGACAGGGGCATGCCACGGCCGCCCTGA
CCACCTTCCTCTTGAACTGTTACACGAAGTTGAAGGACACCGCCAGGTTG
GATCGCTTGGTTTTTCCAGAGAGATACGTGGGGGGGGAGGGGGAGGGGGA
GGAAGGGGAGGAGGGGGAGGAGGGGGGGGAAAGAGGGGAAGGAAGCAGAC
CCTACCTTCCCGCAGGCTTGTCACTGCTTCCCGCGGAGGAGGTAGAAACG
GTGGGAGGGATGGAAGGGGAGCAGGGGGGAGGGAAGGAGAGGCAGGAGCC
CGAGGGGGAGAGCCTGAATACGGCCATGGGCCGGGTGCGGCGCCGGCGGG
GAGGCGTGGATGTCCAAGCGGCCGTGAGCATACTGAAGGAAGCAGGGTAT
TTCGAGCACGCGCTGGAGATAGCTAGGAAGTACCGCGCGCACGAATGGTA
TTTGCGGGTACAGCTTGAAAAGCCCTCGCCCTCCTACCGCGACGCGCTTG
CCTACATCACCTCCCTCTCCTTCCCGGACGCTGCCCGCTTCCTTTCCCTC
TATGGCCAGCGCCTCCTCGCGGTCCTACCGGAGGAGACCACCGGCACCCT
CCTTGCCCTCTGCACCGGCCGTTTCCC
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protein sequence of rna5761

>rna5761-protein ID=rna5761-protein|Name=rna5761|organism=Nannochloropsis gaditana|type=polypeptide|length=177bp
MSSSKLVRPPRLLGFGGRPYNFFDRDSLPRNLSSVLKGNLASALLVEGAL
IFADDQGHITFTDADLHVSLQHRILSPPPSPPPSPSNPPSLLLARSLQSP
PLLVVAGLHGPGAQVVIHTWVGSKVSAPSNTIAVLSALQALAPASEKIGS
TSPFLPFCCVRLYPGSGRGKRWRRPDP
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mRNA from alignment at CM002466.1:774418..775436-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5761 ID=rna5761|Name=rna5761|organism=Nannochloropsis gaditana|type=mRNA|length=1019bp|location=Sequence derived from alignment at CM002466.1:774418..775436- (Nannochloropsis gaditana)
ATGTCCTCATCAAAGCTAGTCCGCCCACCCCGTCTGTTGGGCTTTGGCGG
CCGACCCTACAATTTTTTTGACAGAGATTCCCTTCCTCGGAATCTCTCCT
CTGTTTTGGTAAGTTTACCATGCTTCTGCACGCGCCGACCTCCCCTCCCA
CCGCCCGGGCTTCTCTTCGCTACCCTCCCATTTCTCGTCTCCTTCCGCTT
TCCCCCCCCAACATCTCTATATTCACACATTTTTCAGCTCTCCTTTTATG
CCCTTCAACCCCCTTCTCCCCTCGGTGGCTCTCGTGTGTATATTATCTGT
TCCATCTCTTGATCTTGCATTCTGTCCGCCACTACTTTCGCCTCCACCAT
TATCCCGTCCTTTGTCCGCATGGCGCCTCAATTCTGGCGAGGCACTCTTC
TCTTCTCTCTTCTTTCACAATCCATGTTGTCATGTCCTTTAACCCATAAT
CTTCTTGTGACGTTTCCGACAGAAAGGCAATTTGGCCTCGGCGTTGCTCG
TGGAAGGCGCCTTGATCTTCGCAGACGACCAGGGCCACATCACTTTCACG
GACGCCGACCTCCACGTCTCCCTTCAACACCGCATTCTGTCTCCTCCTCC
TTCCCCCCCTCCCTCCCCCTCCAATCCTCCCTCCCTCCTCCTCGCCCGCT
CCCTCCAGTCCCCTCCCCTCCTCGTGGTCGCCGGCCTCCACGGCCCAGGG
GCGCAAGTTGTTATCCACACCTGGGTGGGAAGCAAAGTCTCAGCGCCCTC
CAACACCATCGCCGTCCTTTCCGCCCTTCAGGCCCTGGCTCCGGGTACCT
TAAATGAGGCCCTGACCGCCGCCGCAGCCATCCCGACGGCCTTGGCTTGT
AACCACGACGGGACGAAGGTCGCCCTCGGCTTCGCTTCCGGCCTCGTCCT
CGTGTGGACCGGCAGCTTCCGAGAAGATCGGATCGACGTCCCCCTTCCTG
CCCTTCTGTTGCGTCCGCCTTTACCCGGGCTCGGGCCGGGGGAAGCGGTG
GCGGCGCCCAGACCCGTGA
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Coding sequence (CDS) from alignment at CM002466.1:774418..775436-

>rna5761 ID=rna5761|Name=rna5761|organism=Nannochloropsis gaditana|type=CDS|length=1602bp|location=Sequence derived from alignment at CM002466.1:774418..775436- (Nannochloropsis gaditana)
CTTCCGAGAAGATCGGATCGACGTCCCCCTTCCTGCCCTTCTGTTGCGTC
CGCCTTTACCCGGGCTCGGGCCGGGGGAAGCGGTGGCGGCGCCCAGACCC
GTGAAAAGGCAATTTGGCCTCGGCGTTGCTCGTGGAAGGCGCCTTGATCT
TCGCAGACGACCAGGGCCACATCACTTTCACGGACGCCGACCTCCACGTC
TCCCTTCAACACCGCATTCTGTCTCCTCCTCCTTCCCCCCCTCCCTCCCC
CTCCAATCCTCCCTCCCTCCTCCTCGCCCGCTCCCTCCAGTCCCCTCCCC
TCCTCGTGGTCGCCGGCCTCCACGGCCCAGGGGCGCAAGTTGTTATCCAC
ACCTGGGTGGGAAGCAAAGTCTCAGCGCCCTCCAACACCATCGCCGTCCT
TTCCGCCCTTCAGGCCCTGGCTCCGGATGTCCTCATCAAAGCTAGTCCGC
CCACCCCGTCTGTTGGGCTTTGGCGGCCGACCCTACAATTTTTTTGACAG
AGATTCCCTTCCTCGGAATCTCTCCTCTGTTTTGCTTCCGAGAAGATCGG
ATCGACGTCCCCCTTCCTGCCCTTCTGTTGCGTCCGCCTTTACCCGGGCT
CGGGCCGGGGGAAGCGGTGGCGGCGCCCAGACCCGTGAAAAGGCAATTTG
GCCTCGGCGTTGCTCGTGGAAGGCGCCTTGATCTTCGCAGACGACCAGGG
CCACATCACTTTCACGGACGCCGACCTCCACGTCTCCCTTCAACACCGCA
TTCTGTCTCCTCCTCCTTCCCCCCCTCCCTCCCCCTCCAATCCTCCCTCC
CTCCTCCTCGCCCGCTCCCTCCAGTCCCCTCCCCTCCTCGTGGTCGCCGG
CCTCCACGGCCCAGGGGCGCAAGTTGTTATCCACACCTGGGTGGGAAGCA
AAGTCTCAGCGCCCTCCAACACCATCGCCGTCCTTTCCGCCCTTCAGGCC
CTGGCTCCGGATGTCCTCATCAAAGCTAGTCCGCCCACCCCGTCTGTTGG
GCTTTGGCGGCCGACCCTACAATTTTTTTGACAGAGATTCCCTTCCTCGG
AATCTCTCCTCTGTTTTGCTTCCGAGAAGATCGGATCGACGTCCCCCTTC
CTGCCCTTCTGTTGCGTCCGCCTTTACCCGGGCTCGGGCCGGGGGAAGCG
GTGGCGGCGCCCAGACCCGTGAAAAGGCAATTTGGCCTCGGCGTTGCTCG
TGGAAGGCGCCTTGATCTTCGCAGACGACCAGGGCCACATCACTTTCACG
GACGCCGACCTCCACGTCTCCCTTCAACACCGCATTCTGTCTCCTCCTCC
TTCCCCCCCTCCCTCCCCCTCCAATCCTCCCTCCCTCCTCCTCGCCCGCT
CCCTCCAGTCCCCTCCCCTCCTCGTGGTCGCCGGCCTCCACGGCCCAGGG
GCGCAAGTTGTTATCCACACCTGGGTGGGAAGCAAAGTCTCAGCGCCCTC
CAACACCATCGCCGTCCTTTCCGCCCTTCAGGCCCTGGCTCCGGATGTCC
TCATCAAAGCTAGTCCGCCCACCCCGTCTGTTGGGCTTTGGCGGCCGACC
CTACAATTTTTTTGACAGAGATTCCCTTCCTCGGAATCTCTCCTCTGTTT
TG
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Synonyms
Publications