EWM24909.1, cds5746 (CDS) Nannochloropsis gaditana

Overview
NameEWM24909.1
Unique Namecds5746
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:775329..775436 -
Alignment locationCM002466.1:774643..774964 -
Alignment locationCM002466.1:774418..774521 -

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Properties
Property NameValue
Protein idEWM24909.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100092g1.2132.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:775329..775436 -
CM002466.1supercontigCM002466.1:774643..774964 -
CM002466.1supercontigCM002466.1:774418..774521 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24909.1 vs. NCBI_GenBank
Match: gi|585106537|gb|EWM24909.1| (hypothetical protein Naga_100092g1 [Nannochloropsis gaditana])

HSP 1 Score: 348.591 bits (893), Expect = 2.379e-121
Identity = 177/177 (100.00%), Postives = 177/177 (100.00%), Query Frame = 0 
Query:    1 MSSSKLVRPPRLLGFGGRPYNFFDRDSLPRNLSSVLKGNLASALLVEGALIFADDQGHITFTDADLHVSLQHRILSPPPSPPPSPSNPPSLLLARSLQSPPLLVVAGLHGPGAQVVIHTWVGSKVSAPSNTIAVLSALQALAPASEKIGSTSPFLPFCCVRLYPGSGRGKRWRRPDP 177
            MSSSKLVRPPRLLGFGGRPYNFFDRDSLPRNLSSVLKGNLASALLVEGALIFADDQGHITFTDADLHVSLQHRILSPPPSPPPSPSNPPSLLLARSLQSPPLLVVAGLHGPGAQVVIHTWVGSKVSAPSNTIAVLSALQALAPASEKIGSTSPFLPFCCVRLYPGSGRGKRWRRPDP
Sbjct:    1 MSSSKLVRPPRLLGFGGRPYNFFDRDSLPRNLSSVLKGNLASALLVEGALIFADDQGHITFTDADLHVSLQHRILSPPPSPPPSPSNPPSLLLARSLQSPPLLVVAGLHGPGAQVVIHTWVGSKVSAPSNTIAVLSALQALAPASEKIGSTSPFLPFCCVRLYPGSGRGKRWRRPDP 177
[Close]
BLAST of EWM24909.1 vs. NCBI_GenBank
Match: gi|553190756|ref|XP_005855253.1| (hypothetical protein NGA_0082200, partial [Nannochloropsis gaditana CCMP526] >gi|422293810|gb|EKU21110.1| hypothetical protein NGA_0082200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 278.1 bits (710), Expect = 1.392e-92
Identity = 143/145 (98.62%), Postives = 144/145 (99.31%), Query Frame = 0 
Query:    1 MSSSKLVRPPRLLGFGGRPYNFFDRDSLPRNLSSVLKGNLASALLVEGALIFADDQGHITFTDADLHVSLQHRILSPPPSPPPSPSNPPSLLLARSLQSPPLLVVAGLHGPGAQVVIHTWVGSKVSAPSNTIAVLSALQALAPAS 145
            MSSSKLVRPPRLLGFGGRPYNFFDRDSLPRNLSSVLKGNLASALLVEGALIFADDQGHITFTDADLHVSLQHRILSPPPSPPPSPSNPPSLLLARSLQSPPLLVVAGLHGPGAQVVIHTWVGSKVSAPSNTIAVLSALQALAP +
Sbjct:    1 MSSSKLVRPPRLLGFGGRPYNFFDRDSLPRNLSSVLKGNLASALLVEGALIFADDQGHITFTDADLHVSLQHRILSPPPSPPPSPSNPPSLLLARSLQSPPLLVVAGLHGPGAQVVIHTWVGSKVSAPSNTIAVLSALQALAPGT 145
The following BLAST results are available for this feature:
BLAST of EWM24909.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585106537|gb|EWM24909.1|2.379e-121100.00hypothetical protein Naga_100092g1 [Nannochloropsi... [more]
gi|553190756|ref|XP_005855253.1|1.392e-9298.62hypothetical protein NGA_0082200, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5761rna5761Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications