rna5759, rna5759 (mRNA) Nannochloropsis gaditana

Overview
Namerna5759
Unique Namerna5759
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1477
Alignment locationCM002466.1:770471..771896 -

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Properties
Property NameValue
Productring zinc finger-containing protein
Orig transcript idgnl|cribi|Naga_100086g1.3829.mrna
Orig protein idgnl|cribi|Naga_100086g1.3829
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:770471..771896 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100086g1gene5564Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24929.1cds5744Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5759rna5759-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5759 ID=rna5759|Name=rna5759|organism=Nannochloropsis gaditana|type=mRNA|length=1477bp
GCGGCAGGTGACTCTGGGGCTTATTGCCGGTACTGTGGCAGCATTTCACC
AATGCGGCTGGCCACCTGTTCCCGCTTTTTCGAATTTTGACCTACTTACT
GAATATGGTCCAAGGGATGCGCAGCTTACCTAATTACCAAAACGTAACCT
TTTATTTTTTTATCTTCTTCTTGACAAGACCCATCCGGGCTATTCAAGAA
GAAGTCGTTCATATCCGTCTGGCCGATGGTGTCGATCGACGGTCTCTACA
AAGTACAGCAGAAGAGCCTCCGACGATCCCTCCAGTGGACACCCCTTCTT
CCACCTCCACGCCTCTTCCAGCACCCGCTAGGCCGTCTGGCCCCCGATTG
CTGCGTGAAATGGACGGTGAATCTTTCGCATTGACGAAAGATGGACACAA
TTACAACGTCAAGATGTTTCAGACCGTGACGCGAAGACGGCCCTCGGAAA
ACACCCCAGTAGTCCTGGGCGTATGGGACAAGTGGGAAATGGTGAACGGG
AAGGAAGAGGCTGAAGATGTGAATATAGCTTGCAAAGAGGCTCAAGTTGG
TGAAGGGCATGGGGTCTCGATGTCGTTTCGCATGCTATACCGGCATGGTG
ACCCATGCCCGCACAATACAAGTGTCCTCCAAAGCGTCACCGTCGACTTC
CTCTGTCTCGCGCCGTCATTCACCACCGTGCCAGGGCTGGACTCCGGAGC
CAGTGCCGGAAAGCCCGCGTCGGTCTCGGACATGGATGGCAGCAGCCATG
TCACCACGTGGGAAGAGGAAGCGGACGGCCAAACTTCGCTGGGGACCCGT
CCAGGTGTGGCGAAGGACATGGGCCAAGGTTTGAATTTCCGTTTGATGGA
CGCCGTTGAGACCCCTCCATGCCACCACCGTCTCACATTGGACTCTCCTG
TGCCGTGTGCCGTCTTGGCACGGGACATGGTGGATGTGGCTCCTCCGTCG
CACGCCGGCGTGCAGGCAGGCGGGGCAGGGAAAGGGAGGAAGGGAAAGCG
GAAACTTCCCAAGGGCCAGAAAAAGCGGAACGGGCGACGGCTCTATAAGA
GGCTGCTAGTAGTCGCAGGAGAGCTATGTCTGGCGCTTCGGGGGCCAATG
AGGAGGGCGGGATCGTCAGTGAAAGAACAGTGTACGTTCGTGGCGAGGGC
AGTCAGGAAACGATTCTGGAAAGCGATCTCCGTCCCCCTCGCGTCCCTCC
TCGCCCTCCCTTCCACCTGCTGGCGGCTTGTCTCGGAACGAGGGTCTAAG
CGAAGGGAAGGGGGTCTGGAGGCGCTGGTGGAGGAGATGAGGGCCCTACG
ATTGTTACTGACGACCTTTCTGGGGGAGAGCCGGGCGGAGGGAGGGACAT
GCTGCCCGTACCCGGGGCGAGGGGAATGCAGAAATGGGAAACGGGAGAGA
GATCACGAAGGTGGGGAGTATGCCTGATGCTGAGCGGTGTGGTCGTCGTC
CTAAAGTAAGAGTCGTGGCAGGTAAGG
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protein sequence of rna5759

>rna5759-protein ID=rna5759-protein|Name=rna5759|organism=Nannochloropsis gaditana|type=polypeptide|length=443bp
PLSLAPALDAPRASAEDFFHVFIDQPHWLRTFLEGVIREPPPPPLPPAST
APPTLVSRGGYARPSPLPTPSPPLLVGNTLLELLLLDWKQAVEDATARGR
EGGKEGGASKPRGPSGGAIEGAMNRKGGGHGGEGEKERRKEARLRAKKAE
SSLLSFLEEQQGRYNEDQALILVQMHNFRPGQLCLLERQRQVELVLEAYM
EEGEVGLVLQRMCRKENRKNAELWRKVLAWIVGRAGGRAGGRAGRKGAAA
EEEAGEDEEEGEEESEDEDAAWDDVVRVLQMIEREHVLPPPVVLEALSQH
EQLPLSVARTYIVRLLKEADGDLQSHQANIESLRKSTHEKRAEVQDLRTS
ARLFQSTTCAACQRPLELPAVHFLCMHSYHLDPGCLAQEGECNECAADQH
HYERIQLKDQRGKATEHESFFTELEEHGFAAVASYFGKGVLNV
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mRNA from alignment at CM002466.1:770471..771896-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5759 ID=rna5759|Name=rna5759|organism=Nannochloropsis gaditana|type=mRNA|length=1426bp|location=Sequence derived from alignment at CM002466.1:770471..771896- (Nannochloropsis gaditana)
CCCCTCTCCCTCGCTCCCGCCCTCGACGCCCCCCGTGCCTCTGCCGAAGA
CTTTTTCCACGTCTTTATCGATCAACCCCACTGGCTTAGGACCTTTTTGG
AGGGGGTCATACGGGAACCGCCCCCGCCCCCCCTGCCTCCGGCCTCCACA
GCCCCCCCTACCTTAGTTAGCAGAGGCGGTTATGCCCGCCCTTCCCCCCT
CCCCACCCCGTCCCCCCCCTTATTGGTGGGTAACACCCTTCTGGAGCTCC
TGCTCCTTGACTGGAAACAGGCGGTAGAGGATGCCACGGCCCGGGGGAGG
GAGGGAGGGAAGGAGGGGGGGGCAAGTAAGCCGCGCGGGCCCAGTGGTGG
AGCTATTGAGGGCGCAATGAATAGGAAGGGAGGCGGACATGGAGGGGAAG
GAGAGAAGGAACGTCGGAAAGAGGCACGGCTTCGCGCCAAAAAAGCGGAG
AGCAGCCTTTTATCCTTTTTGGAGGAGCAGCAAGGTCGCTACAATGAAGA
CCAGGCTTTGATACTGGTGCAGATGCATAATTTCCGACCAGGGCAGCTCT
GTCTTCTGGAGCGGCAGCGGCAAGTTGAGCTCGTGCTGGAGGCCTACATG
GAGGAAGGAGAGGTGGGCTTGGTCTTGCAGCGAATGTGTCGGAAAGAGAA
CCGAAAGAACGCAGAGCTCTGGAGGAAGGTGCTGGCTTGGATTGTGGGGA
GGGCGGGAGGGAGGGCGGGAGGCAGGGCGGGAAGGAAGGGGGCGGCGGCG
GAGGAGGAAGCAGGCGAGGACGAGGAGGAGGGGGAAGAGGAAAGCGAGGA
CGAAGACGCGGCATGGGACGACGTGGTGCGTGTCTTGCAGATGATCGAGC
GAGAACACGTCCTTCCCCCACCCGTGGTCCTCGAGGCGCTCTCCCAGCAC
GAACAGCTCCCCCTCTCCGTGGCGCGTACCTACATCGTCCGTCTCCTCAA
AGAGGCGGACGGAGACCTGCAGAGCCACCAGGCCAACATCGAGTCCCTCC
GAAAGAGCACCCACGAGAAACGCGCCGAGGTTCAGGACCTCCGGACCTCG
GCCCGCCTCTTCCAGAGCACCACGTGCGCGGCCTGCCAGCGACCGTTGGA
GCTCCCTGCGGTCCACTTCCTGTGCATGCATTCGTACCACCTGGATCCCG
GGTGTCTGGCACAGGAGGGAGAGTGCAACGAGTGCGCGGCCGACCAGCAC
CACTACGAGCGGATCCAGCTCAAGGATCAAAGAGGCAAAGCTACGGAGCA
CGAATCGTTCTTCACAGAACTAGAGGAGCATGGATTTGCGGCCGTCGCGT
CCTACTTCGGGAAAGGGGTTTTGAACGTGTAGAATGAAAGGGCCGCACCG
TGTCATAGGCACGGACTCTTCCACCAAGGCAAAGATGCATTTTCCTCCAA
AGTCCATTTATCGATATTGTAGATGT
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Coding sequence (CDS) from alignment at CM002466.1:770471..771896-

>rna5759 ID=rna5759|Name=rna5759|organism=Nannochloropsis gaditana|type=CDS|length=1332bp|location=Sequence derived from alignment at CM002466.1:770471..771896- (Nannochloropsis gaditana)
CCCCTCTCCCTCGCTCCCGCCCTCGACGCCCCCCGTGCCTCTGCCGAAGA
CTTTTTCCACGTCTTTATCGATCAACCCCACTGGCTTAGGACCTTTTTGG
AGGGGGTCATACGGGAACCGCCCCCGCCCCCCCTGCCTCCGGCCTCCACA
GCCCCCCCTACCTTAGTTAGCAGAGGCGGTTATGCCCGCCCTTCCCCCCT
CCCCACCCCGTCCCCCCCCTTATTGGTGGGTAACACCCTTCTGGAGCTCC
TGCTCCTTGACTGGAAACAGGCGGTAGAGGATGCCACGGCCCGGGGGAGG
GAGGGAGGGAAGGAGGGGGGGGCAAGTAAGCCGCGCGGGCCCAGTGGTGG
AGCTATTGAGGGCGCAATGAATAGGAAGGGAGGCGGACATGGAGGGGAAG
GAGAGAAGGAACGTCGGAAAGAGGCACGGCTTCGCGCCAAAAAAGCGGAG
AGCAGCCTTTTATCCTTTTTGGAGGAGCAGCAAGGTCGCTACAATGAAGA
CCAGGCTTTGATACTGGTGCAGATGCATAATTTCCGACCAGGGCAGCTCT
GTCTTCTGGAGCGGCAGCGGCAAGTTGAGCTCGTGCTGGAGGCCTACATG
GAGGAAGGAGAGGTGGGCTTGGTCTTGCAGCGAATGTGTCGGAAAGAGAA
CCGAAAGAACGCAGAGCTCTGGAGGAAGGTGCTGGCTTGGATTGTGGGGA
GGGCGGGAGGGAGGGCGGGAGGCAGGGCGGGAAGGAAGGGGGCGGCGGCG
GAGGAGGAAGCAGGCGAGGACGAGGAGGAGGGGGAAGAGGAAAGCGAGGA
CGAAGACGCGGCATGGGACGACGTGGTGCGTGTCTTGCAGATGATCGAGC
GAGAACACGTCCTTCCCCCACCCGTGGTCCTCGAGGCGCTCTCCCAGCAC
GAACAGCTCCCCCTCTCCGTGGCGCGTACCTACATCGTCCGTCTCCTCAA
AGAGGCGGACGGAGACCTGCAGAGCCACCAGGCCAACATCGAGTCCCTCC
GAAAGAGCACCCACGAGAAACGCGCCGAGGTTCAGGACCTCCGGACCTCG
GCCCGCCTCTTCCAGAGCACCACGTGCGCGGCCTGCCAGCGACCGTTGGA
GCTCCCTGCGGTCCACTTCCTGTGCATGCATTCGTACCACCTGGATCCCG
GGTGTCTGGCACAGGAGGGAGAGTGCAACGAGTGCGCGGCCGACCAGCAC
CACTACGAGCGGATCCAGCTCAAGGATCAAAGAGGCAAAGCTACGGAGCA
CGAATCGTTCTTCACAGAACTAGAGGAGCATGGATTTGCGGCCGTCGCGT
CCTACTTCGGGAAAGGGGTTTTGAACGTGTAG
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Synonyms
Publications