rna5754, rna5754 (mRNA) Nannochloropsis gaditana

Overview
Namerna5754
Unique Namerna5754
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1040
Alignment locationCM002466.1:763291..764211 +

Link to JBrowse

Properties
Property NameValue
Productproteasome chain protein
Orig transcript idgnl|cribi|Naga_100086g7.3837.mrna
Orig protein idgnl|cribi|Naga_100086g7.3837
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:763291..764211 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100086g7gene5559Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5754rna5754-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24937.1cds5739Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5754 ID=rna5754|Name=rna5754|organism=Nannochloropsis gaditana|type=mRNA|length=1040bp
GGGACTTGCAGCGTCCTGCGTGGAACCCTCAATGCCTGCTGATGCCTTGG
CAGGTTGCAATACGTGCCTTGTCTCGCTTTTTCCTCAAGCTCCTGCCCGT
CTGGTGGTCTACGAACTGATGCCTCTCCTCTGTCCAACCTCCATTCACTC
CCTCTCCTAAACGCGGCCCTTTCTTCCTTCCAGCCGAAGCCGTACGGGAA
AAGCACGTGAATAAGCATGGAAGAAATTGTGCAAGGCCAACTTTCCGAGT
TGAAAAAGCTGTGGCGGTCCCCGCGGATGCTTCTTTCGCAGTCCTTGAAC
CTGGCCATGATCGTCTTTTCAGCCTTGATGATATGGAAAGGACTCATGTT
TCTGACCAAGAGCGAGAGCCCGGTTGTGGTTGTTCTTAGTGGCTCTATGG
AACCCGCGTTTCAAAGAGGGGATATCCTTTTCCTCAACAACCAAGACGAT
CCGATCCGTGTCGGTGAAATCGTCGTTTTTAAGATCAAGGATCGAGACAT
TCCCATTGTCCACCGCGTATTGGAGGTACATCAAAAGGAGGATGGGAAGG
TGGAGCTGCTGACCAAAGGGGACAACAATCGAGTAGGGGACCGGGGCTTG
TACGCCCCTGGCCAGCTGTGGCTGAATCGCGAAGACATCCTTGGGCGAGC
CGCAGGGACGCTACGGTATTTGGGTATGGTGACCATCATCCTCAACGACT
ACCCCATGCTCAAATACGTCCTGGTCGGCATTATGGGTCTCTTCGTGCTG
ACGAATAAAGAGAGCTGATGTTAGCCTGTGATCCCGGAGTTTGGAGCTCG
TCCACAAGCTTTGGGAAGACGGATGGAGGGACATCTAGAAAGGAGAGGGA
TCAACGTTGGATCAATGGATCTGGATTGAGCTGCAGAAATTTGGGGCTCA
AATTGTGCATAAATCACCAAAGAAGAGGATCAACGATTGCACTGCATGGA
AGGTGGAAGTAGACAGCAGACTGAGATAATGGAGATAAGAAGGGTAAAAG
ATAAAATTAATCACCCAAAAGGAAGCATCACTCCACGATG
back to top

protein sequence of rna5754

>rna5754-protein ID=rna5754-protein|Name=rna5754|organism=Nannochloropsis gaditana|type=polypeptide|length=234bp
MCREGMHGWKLFWWCCIVFVTPFPRSPLSSTRSDLQHRTSIAAAMDTLLG
IKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNL
TEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGF
DEKDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAE
VVLEKAKKELAVRFLISQPKWIMKVVDKDGVRTL
back to top

mRNA from alignment at CM002466.1:763291..764211+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5754 ID=rna5754|Name=rna5754|organism=Nannochloropsis gaditana|type=mRNA|length=921bp|location=Sequence derived from alignment at CM002466.1:763291..764211+ (Nannochloropsis gaditana)
GAACGCGGGCGACCGGCCGTGATTTGAGCGTTAGGAAGACGGTGGATGTG
TCGGGAGGGTATGCATGGGTGGAAATTATTTTGGTGGTGCTGCATTGTTT
TCGTGACCCCTTTTCCACGCTCACCACTATCATCAACTCGCTCTGACCTT
CAGCACAGAACCTCAATTGCGGCAGCAATGGACACACTCTTGGGCATAAA
AGGAGATGGCTTCGTACTCATAGCTGCCGATGCATCAGCTGCTCGCTCTA
TTCTCGTCTTCAAAACAGACCAAGATAAGATAGCCGCTCTAGACAGTCAC
AAGCTCCTGGCTGCCGCAGGCCCCAATGCTGATTGCAGCAACCTGACTGA
ATACGTACAAAAAAATATGGCTTTGTACGAGTTCAACAACGACTTAAAGC
TTGGTACGCATGCAGCTGCTAACTTTATCAGGCGCACGTTGGCGACAGCT
TTGCGGAAGGGGCCTTACCAAACAAATTTGCTCCTAGGCGGCTTCGACGA
GAAAGACGGGGCTGCTCTCTACTTTCTCGACTATCTAGGGAGTATGCAAA
AAGTGAATTTTGGTGCTCAAGGTTATGCTTCGAATTTCACCTTGTCGATT
TTCGACAGGGAGTACAGGGAGGGCATGACGCTGCCCGAGGCGGAGGTCGt
cttggagaaggcgaaaaaGGAGTTGGCGGTGCGTTTCCTAATCTCCCAAC
CCAAGTGGATCatgaaggtggtggacaaggacggcGTGCGCACGTTGTAG
GAGGTGGCGTCGGCcgagggtgggaaagtacATAAGAAGGGTCGCGTGCG
CGTGGAGGTGACGGGCAACACAGCAGgataggaaggggaagattgAGGTG
GCGTTGGTGGGCAGGTGCCACTTCTAAAAAAAAATAACGGCGGCAACAAA
TTCGTCGCCCAATGAAAGGCT
back to top

Coding sequence (CDS) from alignment at CM002466.1:763291..764211+

>rna5754 ID=rna5754|Name=rna5754|organism=Nannochloropsis gaditana|type=CDS|length=705bp|location=Sequence derived from alignment at CM002466.1:763291..764211+ (Nannochloropsis gaditana)
ATGTGTCGGGAGGGTATGCATGGGTGGAAATTATTTTGGTGGTGCTGCAT
TGTTTTCGTGACCCCTTTTCCACGCTCACCACTATCATCAACTCGCTCTG
ACCTTCAGCACAGAACCTCAATTGCGGCAGCAATGGACACACTCTTGGGC
ATAAAAGGAGATGGCTTCGTACTCATAGCTGCCGATGCATCAGCTGCTCG
CTCTATTCTCGTCTTCAAAACAGACCAAGATAAGATAGCCGCTCTAGACA
GTCACAAGCTCCTGGCTGCCGCAGGCCCCAATGCTGATTGCAGCAACCTG
ACTGAATACGTACAAAAAAATATGGCTTTGTACGAGTTCAACAACGACTT
AAAGCTTGGTACGCATGCAGCTGCTAACTTTATCAGGCGCACGTTGGCGA
CAGCTTTGCGGAAGGGGCCTTACCAAACAAATTTGCTCCTAGGCGGCTTC
GACGAGAAAGACGGGGCTGCTCTCTACTTTCTCGACTATCTAGGGAGTAT
GCAAAAAGTGAATTTTGGTGCTCAAGGTTATGCTTCGAATTTCACCTTGT
CGATTTTCGACAGGGAGTACAGGGAGGGCATGACGCTGCCCGAGGCGGAG
GTCGtcttggagaaggcgaaaaaGGAGTTGGCGGTGCGTTTCCTAATCTC
CCAACCCAAGTGGATCatgaaggtggtggacaaggacggcGTGCGCACGT
TGTAG
back to top
Synonyms
Publications