EWM24937.1, cds5739 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24937.1 vs. NCBI_GenBank
Match: gi|585106567|gb|EWM24937.1| (proteasome chain protein [Nannochloropsis gaditana]) HSP 1 Score: 487.649 bits (1254), Expect = 1.759e-174 Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0 Query: 1 MCREGMHGWKLFWWCCIVFVTPFPRSPLSSTRSDLQHRTSIAAAMDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVRTL 234 MCREGMHGWKLFWWCCIVFVTPFPRSPLSSTRSDLQHRTSIAAAMDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVRTL Sbjct: 1 MCREGMHGWKLFWWCCIVFVTPFPRSPLSSTRSDLQHRTSIAAAMDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVRTL 234
BLAST of EWM24937.1 vs. NCBI_GenBank
Match: gi|553180765|ref|XP_005853458.1| (signal peptidase, endoplasmic reticulum-type [Nannochloropsis gaditana CCMP526] >gi|422295602|gb|EKU22901.1| signal peptidase, endoplasmic reticulum-type [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 398.667 bits (1023), Expect = 2.584e-137 Identity = 196/197 (99.49%), Postives = 197/197 (100.00%), Query Frame = 0 Query: 38 RTSIAAAMDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVRTL 234 +TSIAAAMDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVRTL Sbjct: 166 KTSIAAAMDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVRTL 362
BLAST of EWM24937.1 vs. NCBI_GenBank
Match: gi|219115922|ref|XP_002178756.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409523|gb|EEC49454.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 231.876 bits (590), Expect = 6.799e-74 Identity = 108/188 (57.45%), Postives = 142/188 (75.53%), Query Frame = 0 Query: 45 MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVR 232 MDT+ G++ +G V++AAD S ARSIL+++T+ DK+ L SH + +GPN D N E+V KN+ LYE +ND+KL THA ANF R LATALRKGP+Q N LLGGFD K GA+LY+LDY+ ++QKVN+G+QGYASNF LSI D+EYR+ + +A ++E+ EL RFLISQ +I+KVVDKDGVR Sbjct: 1 MDTVFGVQYEGGVILAADQSNARSILLYQTNLDKVKELTSHSAMGVSGPNCDMVNFCEFVAKNIKLYELSNDIKLSTHAQANFARGELATALRKGPFQVNTLLGGFDNKVGASLYYLDYMAALQKVNYGSQGYASNFCLSIMDKEYRDDLNEADAVKIVEQCIHELHTRFLISQKNFIIKVVDKDGVR 188
BLAST of EWM24937.1 vs. NCBI_GenBank
Match: gi|299470780|emb|CBN79826.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 227.639 bits (579), Expect = 5.598e-72 Identity = 111/194 (57.22%), Postives = 147/194 (75.77%), Query Frame = 0 Query: 45 MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDE----KDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVRTL 234 MDTLLGI G+GFV++AADA ARSIL++K + DKIA L +K LA AGP +DC + TEY+ KNMALYE NND+KL T AAA FIR LA ALRKGP+QT LL+GG D+ KD A+L++LDYLG++QKV +GA GY + FTLS+ DREY +G++L EA +++ KEL RFLI+Q +++KVV +G++ + Sbjct: 1 MDTLLGIAGEGFVVLAADAQVARSILLYKNNMDKIAHLADNKALACAGPQSDCVSFTEYISKNMALYELNNDVKLTTKAAATFIRGELAKALRKGPFQTQLLMGGVDKREAGKDEASLFWLDYLGTLQKVPYGAHGYGAAFTLSVMDREYVKGLSLDEALGIIDNCIKELHTRFLIAQKNFVIKVVTAEGIKVV 194
BLAST of EWM24937.1 vs. NCBI_GenBank
Match: gi|676389971|ref|XP_009038264.1| (hypothetical protein AURANDRAFT_60167 [Aureococcus anophagefferens] >gi|323451149|gb|EGB07027.1| hypothetical protein AURANDRAFT_60167 [Aureococcus anophagefferens]) HSP 1 Score: 222.631 bits (566), Expect = 3.624e-70 Identity = 108/190 (56.84%), Postives = 135/190 (71.05%), Query Frame = 0 Query: 45 MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVRTL 234 M+T +G+ G+G+ ++ AD +AARSI+ FK D+DKI LD KLL +G AD TEYVQKN+ALY+ NN L L T A NFIR LATALRKGPYQTNLLLGGFD+ GA+LY++DY+ S KVNFG GY SNF LSI DRE+ EG+ ++ K EL RFLI PK+++K+VDKDG+R L Sbjct: 1 METTIGLLGNGYAIVCADQNAARSIVCFKKDEDKIMKLDDFKLLGQSGVGADNVAFTEYVQKNVALYKINNGLSLSTKATNNFIRGDLATALRKGPYQTNLLLGGFDKGVGASLYYIDYMASSNKVNFGCHGYGSNFVLSILDREWTEGLDEAAGLDIINKCIAELQTRFLIHMPKFLIKIVDKDGIRVL 190
BLAST of EWM24937.1 vs. NCBI_GenBank
Match: gi|470459075|ref|XP_004341316.1| (proteasome subunit beta type2, putative [Acanthamoeba castellanii str. Neff] >gi|440798163|gb|ELR19231.1| proteasome subunit beta type2, putative [Acanthamoeba castellanii str. Neff]) HSP 1 Score: 215.698 bits (548), Expect = 1.857e-67 Identity = 105/189 (55.56%), Postives = 135/189 (71.43%), Query Frame = 0 Query: 46 DTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVRTL 234 D+L+G+ G +VLIAAD + ARS+L K D DKI ALDSHKLL A GP D + TEYVQ+N+ LY+F N+L LGTHA ANF+R LA ALR PYQ NLLLGG DE +G ALYFLDYL SM K+ + A GY + F LSI D+ Y++ +TL + ++EK EL RF+I+ P +++KVVDK+G R + Sbjct: 3 DSLIGLVGADYVLIAADTTTARSVLKMKLDDDKIMALDSHKLLGAVGPVGDRVHFTEYVQRNLKLYKFRNNLTLGTHATANFVRGELADALRSSPYQVNLLLGGVDE-EGPALYFLDYLASMDKLEYAAHGYCAYFCLSILDKYYKKDLTLEQGIDIIEKCITELRARFIINSPDFVIKVVDKNGTRVV 190
BLAST of EWM24937.1 vs. NCBI_GenBank
Match: gi|673046515|ref|XP_008877218.1| (hypothetical protein H310_12064 [Aphanomyces invadans] >gi|574466990|gb|ETV94015.1| hypothetical protein H310_12064 [Aphanomyces invadans]) HSP 1 Score: 211.46 bits (537), Expect = 7.836e-66 Identity = 105/201 (52.24%), Postives = 136/201 (67.66%), Query Frame = 0 Query: 45 MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFD-------EKDGA----ALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVRTL 234 M++L GI G FV++ AD+ ARSILV+K D+DKI ALDSHK++A +GP AD EY+QKN+ LY+ N + L HAAANF+R LA LRK P Q NLLLG FD DG+ +LY+ DYLGS+ KVN+GAQGY ++F LSI DRE+RE +TL EA+ +L+ EL RFL+ WI K++DKDGV + Sbjct: 1 MESLFGIVGKDFVIVGADSKVARSILVYKDDEDKIQALDSHKVIAGSGPQADRVEFCEYIQKNLKLYQLTNGVTLNGHAAANFVRNELAQRLRKAPVQLNLLLGAFDAANPNVPTADGSDGVPSLYWADYLGSLSKVNYGAQGYGAHFCLSILDREWRENLTLAEAKQILKHCNNELNERFLVRSGTWIYKMIDKDGVHDV 201
BLAST of EWM24937.1 vs. NCBI_GenBank
Match: gi|698822283|ref|XP_009844170.1| (hypothetical protein H257_17177 [Aphanomyces astaci] >gi|574100822|gb|ETV66395.1| hypothetical protein H257_17177 [Aphanomyces astaci]) HSP 1 Score: 211.46 bits (537), Expect = 8.457e-66 Identity = 105/201 (52.24%), Postives = 136/201 (67.66%), Query Frame = 0 Query: 45 MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFD---EKDGA--------ALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVRTL 234 M++L GI G FV++ AD+ ARSILV+K D+DK+ ALDSHKL+A AGP AD EY+QKN+ LY+ N + L HAAAN++R LA LRK P Q NLLLG FD D A +LY+ DY G++ KVN+GAQGY ++F LSI DRE+RE +TL EA+V+L EL+ RFL+ KWI KV+DKDG+ + Sbjct: 1 MESLFGIVGKDFVILGADSKVARSILVYKDDEDKMQALDSHKLIAGAGPQADRVEFCEYIQKNLKLYQLTNGVTLNGHAAANYVRGELAQRLRKAPVQLNLLLGAFDVANPNDPATAATGGVPSLYWADYFGALNKVNYGAQGYGAHFCLSILDREWRENLTLAEAKVILTHCNNELSERFLVRSGKWIYKVIDKDGIHEV 201
BLAST of EWM24937.1 vs. NCBI_GenBank
Match: gi|702444206|ref|XP_010024240.1| (PREDICTED: proteasome subunit beta type-2-B [Eucalyptus grandis] >gi|629094708|gb|KCW60703.1| hypothetical protein EUGRSUZ_H03435 [Eucalyptus grandis]) HSP 1 Score: 208.764 bits (530), Expect = 1.132e-64 Identity = 100/188 (53.19%), Postives = 136/188 (72.34%), Query Frame = 0 Query: 45 MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVR 232 M+ + G+ GDGF ++AAD SA SILV K+++DKI LDSHKL+AA+G D TEYVQKN+ALY+F N + L T AAANF+R LATALRK PY N+LL G+D++ G LYF+DY+ ++ KV+ GA GY S F+LSI DR YR GM+L EA +++K E+ R +++ P +++K+VDKDG R Sbjct: 1 MECVFGLVGDGFAVLAADTSAVNSILVHKSNEDKIMVLDSHKLVAASGEPGDRVQFTEYVQKNVALYQFRNGIPLTTPAAANFMRGELATALRKNPYSVNILLAGYDKETGPLLYFIDYIATLHKVDKGAFGYGSYFSLSIMDRLYRSGMSLEEAIDLVDKCIMEIRSRLVVAPPNFVIKIVDKDGAR 188
BLAST of EWM24937.1 vs. NCBI_GenBank
Match: gi|596189342|ref|XP_007223462.1| (proteasome subunit beta type-2-A [Prunus persica] >gi|645235466|ref|XP_008224283.1| PREDICTED: proteasome subunit beta type-2-A [Prunus mume] >gi|1139793705|gb|ONI26323.1| hypothetical protein PRUPE_1G017400 [Prunus persica] >gi|1139793706|gb|ONI26324.1| hypothetical protein PRUPE_1G017400 [Prunus persica]) HSP 1 Score: 208.379 bits (529), Expect = 1.439e-64 Identity = 97/188 (51.60%), Postives = 135/188 (71.81%), Query Frame = 0 Query: 45 MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVR 232 M+++ G+ GDGF ++AAD SA SILV K+++DKI LDSHKL+AA+G D TEY+QKN+ALY+F N + L T AAANF R LATALRK PY N+L+ GFD++ GA+LY++DY+ S+ KV GA GY S F LS+ DR Y GM++ EA +++K E+ R +++ P +++K+VDKDG R Sbjct: 1 MESIFGLVGDGFAVVAADTSAVHSILVHKSNEDKIMVLDSHKLVAASGEPGDRVQFTEYIQKNVALYQFRNGIPLTTAAAANFTRGELATALRKNPYMVNILMAGFDKEAGASLYYIDYIASLHKVEKGAFGYGSYFALSLMDRHYHSGMSVEEAIDLVDKCIIEIRSRLVVAPPNFVIKIVDKDGAR 188 The following BLAST results are available for this feature:
BLAST of EWM24937.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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