EWM24937.1, cds5739 (CDS) Nannochloropsis gaditana

Overview
NameEWM24937.1
Unique Namecds5739
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:763336..764040 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24937.1
Productproteasome chain protein
Orig transcript idgnl|cribi|Naga_100086g7.3837.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:763336..764040 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004175endopeptidase activity
GO:0004298threonine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0051603proteolysis involved in cellular protein catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
GO:0005634nucleus
GO:0005839proteasome core complex
Vocabulary: INTERPRO
TermDefinition
IPR023333Proteasome_suB-type
IPR016050Proteasome_bsu_CS
IPR029055Ntn_hydrolases_N
IPR001353Proteasome_sua/b
Homology
BLAST of EWM24937.1 vs. NCBI_GenBank
Match: gi|585106567|gb|EWM24937.1| (proteasome chain protein [Nannochloropsis gaditana])

HSP 1 Score: 487.649 bits (1254), Expect = 1.759e-174
Identity = 234/234 (100.00%), Postives = 234/234 (100.00%), Query Frame = 0
Query:    1 MCREGMHGWKLFWWCCIVFVTPFPRSPLSSTRSDLQHRTSIAAAMDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVRTL 234
            MCREGMHGWKLFWWCCIVFVTPFPRSPLSSTRSDLQHRTSIAAAMDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVRTL
Sbjct:    1 MCREGMHGWKLFWWCCIVFVTPFPRSPLSSTRSDLQHRTSIAAAMDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVRTL 234          
BLAST of EWM24937.1 vs. NCBI_GenBank
Match: gi|553180765|ref|XP_005853458.1| (signal peptidase, endoplasmic reticulum-type [Nannochloropsis gaditana CCMP526] >gi|422295602|gb|EKU22901.1| signal peptidase, endoplasmic reticulum-type [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 398.667 bits (1023), Expect = 2.584e-137
Identity = 196/197 (99.49%), Postives = 197/197 (100.00%), Query Frame = 0
Query:   38 RTSIAAAMDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVRTL 234
            +TSIAAAMDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVRTL
Sbjct:  166 KTSIAAAMDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVRTL 362          
BLAST of EWM24937.1 vs. NCBI_GenBank
Match: gi|219115922|ref|XP_002178756.1| (predicted protein [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409523|gb|EEC49454.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 231.876 bits (590), Expect = 6.799e-74
Identity = 108/188 (57.45%), Postives = 142/188 (75.53%), Query Frame = 0
Query:   45 MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVR 232
            MDT+ G++ +G V++AAD S ARSIL+++T+ DK+  L SH  +  +GPN D  N  E+V KN+ LYE +ND+KL THA ANF R  LATALRKGP+Q N LLGGFD K GA+LY+LDY+ ++QKVN+G+QGYASNF LSI D+EYR+ +   +A  ++E+   EL  RFLISQ  +I+KVVDKDGVR
Sbjct:    1 MDTVFGVQYEGGVILAADQSNARSILLYQTNLDKVKELTSHSAMGVSGPNCDMVNFCEFVAKNIKLYELSNDIKLSTHAQANFARGELATALRKGPFQVNTLLGGFDNKVGASLYYLDYMAALQKVNYGSQGYASNFCLSIMDKEYRDDLNEADAVKIVEQCIHELHTRFLISQKNFIIKVVDKDGVR 188          
BLAST of EWM24937.1 vs. NCBI_GenBank
Match: gi|299470780|emb|CBN79826.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 227.639 bits (579), Expect = 5.598e-72
Identity = 111/194 (57.22%), Postives = 147/194 (75.77%), Query Frame = 0
Query:   45 MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDE----KDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVRTL 234
            MDTLLGI G+GFV++AADA  ARSIL++K + DKIA L  +K LA AGP +DC + TEY+ KNMALYE NND+KL T AAA FIR  LA ALRKGP+QT LL+GG D+    KD A+L++LDYLG++QKV +GA GY + FTLS+ DREY +G++L EA  +++   KEL  RFLI+Q  +++KVV  +G++ +
Sbjct:    1 MDTLLGIAGEGFVVLAADAQVARSILLYKNNMDKIAHLADNKALACAGPQSDCVSFTEYISKNMALYELNNDVKLTTKAAATFIRGELAKALRKGPFQTQLLMGGVDKREAGKDEASLFWLDYLGTLQKVPYGAHGYGAAFTLSVMDREYVKGLSLDEALGIIDNCIKELHTRFLIAQKNFVIKVVTAEGIKVV 194          
BLAST of EWM24937.1 vs. NCBI_GenBank
Match: gi|676389971|ref|XP_009038264.1| (hypothetical protein AURANDRAFT_60167 [Aureococcus anophagefferens] >gi|323451149|gb|EGB07027.1| hypothetical protein AURANDRAFT_60167 [Aureococcus anophagefferens])

HSP 1 Score: 222.631 bits (566), Expect = 3.624e-70
Identity = 108/190 (56.84%), Postives = 135/190 (71.05%), Query Frame = 0
Query:   45 MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVRTL 234
            M+T +G+ G+G+ ++ AD +AARSI+ FK D+DKI  LD  KLL  +G  AD    TEYVQKN+ALY+ NN L L T A  NFIR  LATALRKGPYQTNLLLGGFD+  GA+LY++DY+ S  KVNFG  GY SNF LSI DRE+ EG+       ++ K   EL  RFLI  PK+++K+VDKDG+R L
Sbjct:    1 METTIGLLGNGYAIVCADQNAARSIVCFKKDEDKIMKLDDFKLLGQSGVGADNVAFTEYVQKNVALYKINNGLSLSTKATNNFIRGDLATALRKGPYQTNLLLGGFDKGVGASLYYIDYMASSNKVNFGCHGYGSNFVLSILDREWTEGLDEAAGLDIINKCIAELQTRFLIHMPKFLIKIVDKDGIRVL 190          
BLAST of EWM24937.1 vs. NCBI_GenBank
Match: gi|470459075|ref|XP_004341316.1| (proteasome subunit beta type2, putative [Acanthamoeba castellanii str. Neff] >gi|440798163|gb|ELR19231.1| proteasome subunit beta type2, putative [Acanthamoeba castellanii str. Neff])

HSP 1 Score: 215.698 bits (548), Expect = 1.857e-67
Identity = 105/189 (55.56%), Postives = 135/189 (71.43%), Query Frame = 0
Query:   46 DTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVRTL 234
            D+L+G+ G  +VLIAAD + ARS+L  K D DKI ALDSHKLL A GP  D  + TEYVQ+N+ LY+F N+L LGTHA ANF+R  LA ALR  PYQ NLLLGG DE +G ALYFLDYL SM K+ + A GY + F LSI D+ Y++ +TL +   ++EK   EL  RF+I+ P +++KVVDK+G R +
Sbjct:    3 DSLIGLVGADYVLIAADTTTARSVLKMKLDDDKIMALDSHKLLGAVGPVGDRVHFTEYVQRNLKLYKFRNNLTLGTHATANFVRGELADALRSSPYQVNLLLGGVDE-EGPALYFLDYLASMDKLEYAAHGYCAYFCLSILDKYYKKDLTLEQGIDIIEKCITELRARFIINSPDFVIKVVDKNGTRVV 190          
BLAST of EWM24937.1 vs. NCBI_GenBank
Match: gi|673046515|ref|XP_008877218.1| (hypothetical protein H310_12064 [Aphanomyces invadans] >gi|574466990|gb|ETV94015.1| hypothetical protein H310_12064 [Aphanomyces invadans])

HSP 1 Score: 211.46 bits (537), Expect = 7.836e-66
Identity = 105/201 (52.24%), Postives = 136/201 (67.66%), Query Frame = 0
Query:   45 MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFD-------EKDGA----ALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVRTL 234
            M++L GI G  FV++ AD+  ARSILV+K D+DKI ALDSHK++A +GP AD     EY+QKN+ LY+  N + L  HAAANF+R  LA  LRK P Q NLLLG FD         DG+    +LY+ DYLGS+ KVN+GAQGY ++F LSI DRE+RE +TL EA+ +L+    EL  RFL+    WI K++DKDGV  +
Sbjct:    1 MESLFGIVGKDFVIVGADSKVARSILVYKDDEDKIQALDSHKVIAGSGPQADRVEFCEYIQKNLKLYQLTNGVTLNGHAAANFVRNELAQRLRKAPVQLNLLLGAFDAANPNVPTADGSDGVPSLYWADYLGSLSKVNYGAQGYGAHFCLSILDREWRENLTLAEAKQILKHCNNELNERFLVRSGTWIYKMIDKDGVHDV 201          
BLAST of EWM24937.1 vs. NCBI_GenBank
Match: gi|698822283|ref|XP_009844170.1| (hypothetical protein H257_17177 [Aphanomyces astaci] >gi|574100822|gb|ETV66395.1| hypothetical protein H257_17177 [Aphanomyces astaci])

HSP 1 Score: 211.46 bits (537), Expect = 8.457e-66
Identity = 105/201 (52.24%), Postives = 136/201 (67.66%), Query Frame = 0
Query:   45 MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFD---EKDGA--------ALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVRTL 234
            M++L GI G  FV++ AD+  ARSILV+K D+DK+ ALDSHKL+A AGP AD     EY+QKN+ LY+  N + L  HAAAN++R  LA  LRK P Q NLLLG FD     D A        +LY+ DY G++ KVN+GAQGY ++F LSI DRE+RE +TL EA+V+L     EL+ RFL+   KWI KV+DKDG+  +
Sbjct:    1 MESLFGIVGKDFVILGADSKVARSILVYKDDEDKMQALDSHKLIAGAGPQADRVEFCEYIQKNLKLYQLTNGVTLNGHAAANYVRGELAQRLRKAPVQLNLLLGAFDVANPNDPATAATGGVPSLYWADYFGALNKVNYGAQGYGAHFCLSILDREWRENLTLAEAKVILTHCNNELSERFLVRSGKWIYKVIDKDGIHEV 201          
BLAST of EWM24937.1 vs. NCBI_GenBank
Match: gi|702444206|ref|XP_010024240.1| (PREDICTED: proteasome subunit beta type-2-B [Eucalyptus grandis] >gi|629094708|gb|KCW60703.1| hypothetical protein EUGRSUZ_H03435 [Eucalyptus grandis])

HSP 1 Score: 208.764 bits (530), Expect = 1.132e-64
Identity = 100/188 (53.19%), Postives = 136/188 (72.34%), Query Frame = 0
Query:   45 MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVR 232
            M+ + G+ GDGF ++AAD SA  SILV K+++DKI  LDSHKL+AA+G   D    TEYVQKN+ALY+F N + L T AAANF+R  LATALRK PY  N+LL G+D++ G  LYF+DY+ ++ KV+ GA GY S F+LSI DR YR GM+L EA  +++K   E+  R +++ P +++K+VDKDG R
Sbjct:    1 MECVFGLVGDGFAVLAADTSAVNSILVHKSNEDKIMVLDSHKLVAASGEPGDRVQFTEYVQKNVALYQFRNGIPLTTPAAANFMRGELATALRKNPYSVNILLAGYDKETGPLLYFIDYIATLHKVDKGAFGYGSYFSLSIMDRLYRSGMSLEEAIDLVDKCIMEIRSRLVVAPPNFVIKIVDKDGAR 188          
BLAST of EWM24937.1 vs. NCBI_GenBank
Match: gi|596189342|ref|XP_007223462.1| (proteasome subunit beta type-2-A [Prunus persica] >gi|645235466|ref|XP_008224283.1| PREDICTED: proteasome subunit beta type-2-A [Prunus mume] >gi|1139793705|gb|ONI26323.1| hypothetical protein PRUPE_1G017400 [Prunus persica] >gi|1139793706|gb|ONI26324.1| hypothetical protein PRUPE_1G017400 [Prunus persica])

HSP 1 Score: 208.379 bits (529), Expect = 1.439e-64
Identity = 97/188 (51.60%), Postives = 135/188 (71.81%), Query Frame = 0
Query:   45 MDTLLGIKGDGFVLIAADASAARSILVFKTDQDKIAALDSHKLLAAAGPNADCSNLTEYVQKNMALYEFNNDLKLGTHAAANFIRRTLATALRKGPYQTNLLLGGFDEKDGAALYFLDYLGSMQKVNFGAQGYASNFTLSIFDREYREGMTLPEAEVVLEKAKKELAVRFLISQPKWIMKVVDKDGVR 232
            M+++ G+ GDGF ++AAD SA  SILV K+++DKI  LDSHKL+AA+G   D    TEY+QKN+ALY+F N + L T AAANF R  LATALRK PY  N+L+ GFD++ GA+LY++DY+ S+ KV  GA GY S F LS+ DR Y  GM++ EA  +++K   E+  R +++ P +++K+VDKDG R
Sbjct:    1 MESIFGLVGDGFAVVAADTSAVHSILVHKSNEDKIMVLDSHKLVAASGEPGDRVQFTEYIQKNVALYQFRNGIPLTTAAAANFTRGELATALRKNPYMVNILMAGFDKEAGASLYYIDYIASLHKVEKGAFGYGSYFALSLMDRHYHSGMSVEEAIDLVDKCIIEIRSRLVVAPPNFVIKIVDKDGAR 188          
The following BLAST results are available for this feature:
BLAST of EWM24937.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106567|gb|EWM24937.1|1.759e-174100.00proteasome chain protein [Nannochloropsis gaditana... [more]
gi|553180765|ref|XP_005853458.1|2.584e-13799.49signal peptidase, endoplasmic reticulum-type [Nann... [more]
gi|219115922|ref|XP_002178756.1|6.799e-7457.45predicted protein [Phaeodactylum tricornutum CCAP ... [more]
gi|299470780|emb|CBN79826.1|5.598e-7257.22conserved unknown protein [Ectocarpus siliculosus][more]
gi|676389971|ref|XP_009038264.1|3.624e-7056.84hypothetical protein AURANDRAFT_60167 [Aureococcus... [more]
gi|470459075|ref|XP_004341316.1|1.857e-6755.56proteasome subunit beta type2, putative [Acanthamo... [more]
gi|673046515|ref|XP_008877218.1|7.836e-6652.24hypothetical protein H310_12064 [Aphanomyces invad... [more]
gi|698822283|ref|XP_009844170.1|8.457e-6652.24hypothetical protein H257_17177 [Aphanomyces astac... [more]
gi|702444206|ref|XP_010024240.1|1.132e-6453.19PREDICTED: proteasome subunit beta type-2-B [Eucal... [more]
gi|596189342|ref|XP_007223462.1|1.439e-6451.60proteasome subunit beta type-2-A [Prunus persica] ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5754rna5754Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications