rna5752, rna5752 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5752
Unique Name	rna5752
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2459
Alignment location	CM002466.1:758200..760743 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100086g9.3846.mrna
Orig protein id	gnl\|cribi\|Naga_100086g9.3846
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:758200..760743 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100086g9	gene5557	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5752	rna5752-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24946.1	cds5737	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:758200..760743+
coding sequence from alignment at CM002466.1:758200..760743+

mRNA sequence

>rna5752 ID=rna5752|Name=rna5752|organism=Nannochloropsis gaditana|type=mRNA|length=2459bp
TTGTGGGGAGCAAGTCCCTGAGAACTAACCTTGACCAGAACGGCCTCCAG
ACCGTATTCTGTCATCTCTTTTAAGAGCTGTGATTGGTCGTACTGCCACA
GAAAGGCCAGGGACTGCAAGCCCAGTCGGTCGCAGACGCTCTCGACTCGT
GTCCGTTGATAAGTGGAAAGGACGGCACCGCTTGATACCGCCTCGACCTC
CGGATAAAGTTGTTTGACCCGAAAAAGCAAAGCATGTAGATCTTCGACTT
CATCACCTTCTGTCGGCGTGTACTGCAAGCCTTGGTGGGTACTGGCACCG
GACATGGTAGCTCTTACCATGGGCACGCCTATACATTCAGCAAGGCACTC
GACGGCAGACGACCCCGCGCTTTGAAACATGAAAGAGTCCAATTCCTCTG
GTCCATCGACTGGAGGAAACAAGTTTGCTAAAACAACGAGCTCATGTCCG
TAAGCCAGGCATTTTGCAATGCTGAAAACGCTGTCCTTACCGCCGCTAAC
TAGTGCAACAAACCGCATTCTAGGGTGGGGAGGTTAAACAACAATAGCGG
ACGGCTCTCCCCGATTGGAATTTTGGGAATTTATGAGGAGAGGTATCTCC
AGCACTTGTCTGTGTGTGAGTTTTATTTATTTGATCGATATATTAATAGT
TGGTGAGCAAATAGGGACAATATACTCGGAAAGAGCGTAGGCAACCTACT
CGCCTGCAGAGCAACTCAAGATACTGCACCTGGCGCCCTGCAGTACTGCC
CGCCATCCTCTTTTTTCGTACGCGAGCACTTATTTCCTCTTTCACCACTC
ACGCAATAGATGTCAAGAGGAGGAGACCCTTTGCCACACCCACAGCAGCC
GTCACCTTCCTCATTGTTTCCCTTATCTGCGTTCTCAGCATCGTCTCCCC
CAAAGCGAGCTGCCAACTACACTTGGAAATCCAGGTCCCGATACTCCGCT
TCCACGCCGCTCCGTTTGCGATTGTTGCTGCCATTATTTATCCTACTAGA
GATCCGACCGGTCAAGGCATTCACATCGCCATTTCCTCGGTATCGCTTCC
ACAGTGCCTTTTCACTTGGCTCGGCGCGGATAAGATTGAACCCTTGGTCT
TTACCAGCAAGCACCCTCATCATGAACGAGGAAGTAGAAACCAATACTAA
ATCAGGCCTTCCCGCACCTATCAAGGACAAATCTGTTCCTCTGACAGACA
CGTCGCTCAAACCCTTCCTGGAGCATATTATTGCGGGGGCGAGCCTGTCC
TCGAGTGACGTCGAGGCTGCTTTCGACCGCATTCTAGCCGGATCGGACCC
TGTGCAAGTAGGGGCATTGCTGGCCATGCTTCGTCAAAGGGGAGAGACCC
CCGTAGAGATCGCAGGGATGGTCCGCGCCATGTTGAAGCAGCGGTACCCG
GTGAGTGTGACGGGGAAGCTCCTTGATATTGTAGGGACGGGGGGGGACGG
GGCCCATACCATCAACATCTCCACTGCTGCAATCATCCTGGCCGCAGCCT
GCGGTTGCAAGGCCGCAAAACTGGGCAATCGGTCCGTCTCCTCCAAATGC
GGTTCCGCGGATGTGTTGGAAACGTTGGGAATTGACATGGAGCTGACAGC
GGAGCAGGTGGCCGAATGCATCGAGACGACAGGTGTCGGCTTCATGTTTG
CCCCGGTGGTCCACCCTACCATGAAGAAAGTCGCACCCATCCGCAAGGCT
TTGGGTGTCCGCACCGCCTTCAACATTGTGGGCCCGCTCTTGAATGCGGC
CGGAGCCCAGCACGCCGTGGTGGGGGTCTTCCAAGAGCGTCTCCTGGATG
TGTTGGCGGGCACGCTGGGCGAGATCGGGACGGTGGACCGGGCGCTGATC
ATCCACGGGGTGGGCCTCGACGAGATCTCTCCGCTAGGACCGTCCACGAT
TGTCGAATTGAAAAACGTGGCGCCGGCGGGGCAAGCGCGCGTGTATGAGA
GGACGAGCTACACCTTCGACCCGCTCACCTGTGGCATCCCGCGATGTGCC
ATCGAGGACCTGAGGGGCGGGGACGCCACGGAAAACGCGGCCTTGCTCCG
TCAAGTTCTCTCGGGGGGACCAGAAAGAGGGGCGAAACGGGACGCGGTCG
TTTTAAATGCGGCAGCTGGCCTGTACGTGTACGGCTCAGTCCCGAGTCTA
GCGGAGGGGGTGACGTTGGCGTACGATATCTTGGCGAGTGGGAAGGCCCT
GGTGAAGCTAGACGAATGGATCGCGTGCTCGCAGGCATTGAAAAAAGGGG
GCGGGTAGGGAGATGGTGGGCGTCCAAGGTAGGAAAGGGGAGGGGGAAGG
GGGCGGGGTGCAGGTGGTGAAGAGGGGGACAGGGAGGACAGCGCTTAGGC
GTGGAAAATGGGTGAAAGACCCGCCTATGATGCATCGAGGGTAGATTGTC
TGCAAGAGGCTATAGCACCACCATAAGATTGCCATAAATGACATAACTAT
CCTCCAGCT

protein sequence of rna5752

>rna5752-protein ID=rna5752-protein|Name=rna5752|organism=Nannochloropsis gaditana|type=polypeptide|length=847bp
MRFVALVSGGKDSVFSIAKCLAYGHELVVLANLFPPVDGPEELDSFMFQS
AGSSAVECLAECIGVPMVRATMSGASTHQGLQYTPTEGDEVEDLHALLFR
VKQLYPEVEAVSSGAVLSTYQRTRVESVCDRLGLQSLAFLWQYDQSQLLK
EMTEYGLEAVLVKVSSQGLAPHKHLGKSIAELEPLFKRLNRQHGFHVAGE
GGEYETLAIDAPFFKRRLVLDDTEVVIHSDDVYTPVGLLHIHRCHAEFKE
ESSPTETSKGNEPNRCLVLPLEVAIVRSLADGGPSTSAESLGSQACAVAP
GKRARKWRIRPQPHVWRQGRVLNISGYCVPTPRIHFQGADSSTHGEAAGQ
MRLCLEGVQRVLLEHGLSLHDVVVVHLYLRSMASFAAVNAEYCRAPFHPH
HPPSRSCVELPLARPYDDEEACRGWEEVEVLLDVMALAGSGAAMDAGSFQ
PRQVLHVKSLSGWAPVCIGPYSQANLLSHGHLAFLAGQIGLDPATMVLVK
PRDLEAFQALYNCAQVLHALRASLRTVLMVVVYVHVDQNGYESFSPDPSE
WEDVCRLDAGWGRTGTGRAATGDKGVNDASYQGANRSDGDDSDEEQDGEE
DEANEGQCQSSPCPIFLPVGVPNLPRGAAIEFEVVALSTAFAQVKSPTRR
AEQGRLEDILEEKDMGECPLPLPFQPPATFAALASKNMPLMSRPLLSYTW
EAIFVPYVFNFVSLSLYLDDDLDGRNEGGQNETLLLNYTHVAYALVDQLR
KILRVAHLTWQQLSHLRVFYIATCLDNEAMLREALAAALPSDGQCARTFL
PVSSLMSECQEGSKRQDSLFLRVQVIALDLEKLRTEAWVHSVPDGGM

mRNA from alignment at CM002466.1:758200..760743+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5752 ID=rna5752|Name=rna5752|organism=Nannochloropsis gaditana|type=mRNA|length=2544bp|location=Sequence derived from alignment at CM002466.1:758200..760743+ (Nannochloropsis gaditana)
ATGCGGTTTGTTGCACTAGTTAGCGGCGGTAAGGACAGCGTTTTCAGCAT
TGCAAAATGCCTGGCTTACGGACATGAGCTCGTTGTTTTAGCAAACTTGT
TTCCTCCAGTCGATGGACCAGAGGAATTGGACTCTTTCATGTTTCAAAGC
GCGGGGTCGTCTGCCGTCGAGTGCCTTGCTGAATGTATAGGCGTGCCCAT
GGTAAGAGCTACCATGTCCGGTGCCAGTACCCACCAAGGCTTGCAGTACA
CGCCGACAGAAGGTGATGAAGTCGAAGATCTACATGCTTTGCTTTTTCGG
GTCAAACAACTTTATCCGGAGGTCGAGGCGGTATCAAGCGGTGCCGTCCT
TTCCACTTATCAACGGACACGAGTCGAGAGCGTCTGCGACCGACTGGGCT
TGCAGTCCCTGGCCTTTCTGTGGCAGTACGACCAATCACAGCTCTTAAAA
GAGATGACAGAATACGGTCTGGAGGCCGTTCTGGTCAAGGTTAGTTCTCA
GGGACTTGCTCCCCACAAACACCTGGGTAAATCAATAGCTGAGCTAGAGC
CGTTGTTCAAAAGATTGAACCGTCAGCATGGGTTTCATgtggcgggagaa
gggggagaataTGAAACGCTGGCTATAGATGCACCATTTTTCAAACGGCG
CTTGGTGCTAGATGATACGGAGGTTGTCATTCATTCGGACGACGTGTATA
CGCCCGTTGGGCTTTTGCACATCCACCGGTGCCATGCCGAGTTCAAGGAG
GAATCTTCGCCAACAGAAACATCAAAGGGTAATGAACCAAACAgatgcct
cgtcctcccattAGAAGTAGCGATCGTACGCTCCCTTGCGGACGGCGGGC
CTAGCACAAGCGCCGAAAGTCTCGGCAGTCAAGCGTGTGCCGTAGCCCCC
GGGAAGAGAGCCAGGAAATGGCGCATTCGCCCTCAGCCGCACGTATGGCG
GCAAGGGAGAGTTTTGAACATATCGGGGTACTGCGTACCCACACCACGGA
TCCATTTCCAGGGCGCGGACAGCTCCACGCATGGAGAGGCCGCTGGTCAA
ATGCGGCTCTGTCTTGAGGGAGTGCAACGGGTCTTGCTTGAGCACGGCCT
CAGCCTCCACGATGTTGTCGTTGTCCACCTGTACCTCCGCTCCATGGCTT
CCTTCGCCGCCGTCAACGCCGAATATTGCCGAGCACCCTTTCATCCgcac
caccctccttcccgctcctgTGTCGAACTTCCCTTGGCAAGGCCAtacga
tgacgaggaagcaTGTAGGggttgggaggaggtcgaggtcCTGCTCGACG
TGATGGCCCTGGCCGGGTCGGGCGCCGCCATGGATGCAGGGTCTTTCCAA
CCTCGACAGGTGCTGCATGTGAAGAGCCTGTCGGGGTGGGCACCGGTGTG
TATCGGTCCTTACAGTCAAGCCAATCTTTTGAGCCACGGccacctcgctt
tcctcgcgGGGCAGATCGGTCTGGACCCGGCCACCATGGTGCTTGTCAAA
CCCCGTGACTTGGAGGCTTTCCAGGCTCTGTATAATTGTGCGCAGGTCTT
GCATGCGCTCCGAGCCTCCCTTCGGACGGTtttgatggtggtggtgtaCG
TGCATGTGGACCAGAACGGGTATGAGTCGTTTTCCCCGGACCCCTCGGAA
TGGGAGGATGTCTGCCGCTTGGACGCTGGGTGGGGCCGAACCGGGACAGG
ACGCGCGGCCACAGGCGATAAGGGGGTCAATGATGCGAGCTACCAAGGCG
CCAATCGTTCAGATGGGGATGACAGCGATGAGGAacaggatggagaggag
gacgaggcgaacGAAGGCCAATGTCAAAGCAGCCCGTGCCCTATTTTTCT
CCCTGTGGGAGTACCCAACCTGCCTCGGGGCGCCGCGATTGAGTTCGAAG
TGGTAGCCCTGTCAACAGCTTTCGCTCAGGTGAAGTCACCGACGCGAAGG
GCGGAGCAGGGCCGGTTGGAGGATATTctagaggagaaggacatgggcgA
ATGCCCATTGCCCTTACCTTTTCAGCCGCCCGCTACTTTCGCTGCGCTGG
CGTCGAAAAACATGCCCCTTATGTCAcgacctctcctctcctatACCTGG
GAGGCTATCTTTGTACCATATGTCTTTAACTTCGTAAGCTTGTCTCTCTA
TCTTGACGACGACCTGGATGGCAGGAATGAAGGTGGGCAGAATGagaccc
tcctcctgaaTTACACTCATGTTGCCTACGCTTTGGTCGATCAATTAAGG
AAGATTCTGAGAGTTGCACACCTGACTTGGCAGCAACTTTCTCATCTGCG
TGTCTTTTACATTGCTACATGTTTGGACAACGAAGCGATGCTCAGAGAGG
CCTTGGCTGCCGCTTTGCCCAGTGACGGCCAGTGTGCCCGTACCTTTCTT
CCAGTCTCTAGTCTGATGTCTGAATGTCAAGAGGGCTCGAAAAGGCAGGA
TAGCTTGTTCCTCCGGGTCCAGGTTATTGCTTTGGATCTGGAAAAGTTGA
GGACAGAGGCCTGGGTGCACAGTGTACCAGACGGAGGCATGTAG

Coding sequence (CDS) from alignment at CM002466.1:758200..760743+

>rna5752 ID=rna5752|Name=rna5752|organism=Nannochloropsis gaditana|type=CDS|length=2544bp|location=Sequence derived from alignment at CM002466.1:758200..760743+ (Nannochloropsis gaditana)
ATGCGGTTTGTTGCACTAGTTAGCGGCGGTAAGGACAGCGTTTTCAGCAT
TGCAAAATGCCTGGCTTACGGACATGAGCTCGTTGTTTTAGCAAACTTGT
TTCCTCCAGTCGATGGACCAGAGGAATTGGACTCTTTCATGTTTCAAAGC
GCGGGGTCGTCTGCCGTCGAGTGCCTTGCTGAATGTATAGGCGTGCCCAT
GGTAAGAGCTACCATGTCCGGTGCCAGTACCCACCAAGGCTTGCAGTACA
CGCCGACAGAAGGTGATGAAGTCGAAGATCTACATGCTTTGCTTTTTCGG
GTCAAACAACTTTATCCGGAGGTCGAGGCGGTATCAAGCGGTGCCGTCCT
TTCCACTTATCAACGGACACGAGTCGAGAGCGTCTGCGACCGACTGGGCT
TGCAGTCCCTGGCCTTTCTGTGGCAGTACGACCAATCACAGCTCTTAAAA
GAGATGACAGAATACGGTCTGGAGGCCGTTCTGGTCAAGGTTAGTTCTCA
GGGACTTGCTCCCCACAAACACCTGGGTAAATCAATAGCTGAGCTAGAGC
CGTTGTTCAAAAGATTGAACCGTCAGCATGGGTTTCATgtggcgggagaa
gggggagaataTGAAACGCTGGCTATAGATGCACCATTTTTCAAACGGCG
CTTGGTGCTAGATGATACGGAGGTTGTCATTCATTCGGACGACGTGTATA
CGCCCGTTGGGCTTTTGCACATCCACCGGTGCCATGCCGAGTTCAAGGAG
GAATCTTCGCCAACAGAAACATCAAAGGGTAATGAACCAAACAgatgcct
cgtcctcccattAGAAGTAGCGATCGTACGCTCCCTTGCGGACGGCGGGC
CTAGCACAAGCGCCGAAAGTCTCGGCAGTCAAGCGTGTGCCGTAGCCCCC
GGGAAGAGAGCCAGGAAATGGCGCATTCGCCCTCAGCCGCACGTATGGCG
GCAAGGGAGAGTTTTGAACATATCGGGGTACTGCGTACCCACACCACGGA
TCCATTTCCAGGGCGCGGACAGCTCCACGCATGGAGAGGCCGCTGGTCAA
ATGCGGCTCTGTCTTGAGGGAGTGCAACGGGTCTTGCTTGAGCACGGCCT
CAGCCTCCACGATGTTGTCGTTGTCCACCTGTACCTCCGCTCCATGGCTT
CCTTCGCCGCCGTCAACGCCGAATATTGCCGAGCACCCTTTCATCCgcac
caccctccttcccgctcctgTGTCGAACTTCCCTTGGCAAGGCCAtacga
tgacgaggaagcaTGTAGGggttgggaggaggtcgaggtcCTGCTCGACG
TGATGGCCCTGGCCGGGTCGGGCGCCGCCATGGATGCAGGGTCTTTCCAA
CCTCGACAGGTGCTGCATGTGAAGAGCCTGTCGGGGTGGGCACCGGTGTG
TATCGGTCCTTACAGTCAAGCCAATCTTTTGAGCCACGGccacctcgctt
tcctcgcgGGGCAGATCGGTCTGGACCCGGCCACCATGGTGCTTGTCAAA
CCCCGTGACTTGGAGGCTTTCCAGGCTCTGTATAATTGTGCGCAGGTCTT
GCATGCGCTCCGAGCCTCCCTTCGGACGGTtttgatggtggtggtgtaCG
TGCATGTGGACCAGAACGGGTATGAGTCGTTTTCCCCGGACCCCTCGGAA
TGGGAGGATGTCTGCCGCTTGGACGCTGGGTGGGGCCGAACCGGGACAGG
ACGCGCGGCCACAGGCGATAAGGGGGTCAATGATGCGAGCTACCAAGGCG
CCAATCGTTCAGATGGGGATGACAGCGATGAGGAacaggatggagaggag
gacgaggcgaacGAAGGCCAATGTCAAAGCAGCCCGTGCCCTATTTTTCT
CCCTGTGGGAGTACCCAACCTGCCTCGGGGCGCCGCGATTGAGTTCGAAG
TGGTAGCCCTGTCAACAGCTTTCGCTCAGGTGAAGTCACCGACGCGAAGG
GCGGAGCAGGGCCGGTTGGAGGATATTctagaggagaaggacatgggcgA
ATGCCCATTGCCCTTACCTTTTCAGCCGCCCGCTACTTTCGCTGCGCTGG
CGTCGAAAAACATGCCCCTTATGTCAcgacctctcctctcctatACCTGG
GAGGCTATCTTTGTACCATATGTCTTTAACTTCGTAAGCTTGTCTCTCTA
TCTTGACGACGACCTGGATGGCAGGAATGAAGGTGGGCAGAATGagaccc
tcctcctgaaTTACACTCATGTTGCCTACGCTTTGGTCGATCAATTAAGG
AAGATTCTGAGAGTTGCACACCTGACTTGGCAGCAACTTTCTCATCTGCG
TGTCTTTTACATTGCTACATGTTTGGACAACGAAGCGATGCTCAGAGAGG
CCTTGGCTGCCGCTTTGCCCAGTGACGGCCAGTGTGCCCGTACCTTTCTT
CCAGTCTCTAGTCTGATGTCTGAATGTCAAGAGGGCTCGAAAAGGCAGGA
TAGCTTGTTCCTCCGGGTCCAGGTTATTGCTTTGGATCTGGAAAAGTTGA
GGACAGAGGCCTGGGTGCACAGTGTACCAGACGGAGGCATGTAG

Synonyms

Publications