rna5750, rna5750 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5750
Unique Name	rna5750
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3563
Alignment location	CM002466.1:754060..756145 +

Link to JBrowse

Properties


Property Name	Value
Product	signal recognition particle receptor
Orig transcript id	gnl\|cribi\|Naga_100086g11.3839.mrna
Orig protein id	gnl\|cribi\|Naga_100086g11.3839
Gene	SRP101
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:754060..756145 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
SRP101	gene5555	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5750	rna5750-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24939.1	cds5735	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:754060..756145+
coding sequence from alignment at CM002466.1:754060..756145+

mRNA sequence

>rna5750 ID=rna5750|Name=rna5750|organism=Nannochloropsis gaditana|type=mRNA|length=3563bp
CGTTGGAAGCGGCGACGTCCCTGCATAGTACTTGGACGCGTGTACGCACG
AGTTTCCCGTGACGTGGACACCGGGCAAGGTCGTAGCCTGCCGCGGTTTG
TCATGCGTCCAAGCGTATTCTAGCTGATTGATTTGTGTACAGTGTGTCCT
GGGAGGGCCTCGGTGGTGGAACACGATGAATTTTAGAGAGGACAAGTCCG
AGGTCCGCCTGGGGCCTCAAAATGGAGGAGGACGACACATGCACACTCGT
ACATGGTCATGAATGACGTTCGGTCCTCTTTTAACCATCGGCAACATCCG
CATGTATGATATCCATAGAAATGAAAGCGATGTTCAGGCTGTTGGGTCAT
CGTTTTATGTGTCTCTGGAAACCCGGTGGACAACTCGATTGCTCGGACTT
TCCATGTGAGGAAATCCCTCAACCGAAATTTTAGGAGCCTTGAGCATCCG
TCCATACGGGCTGGCCTCTTTAGATACTTTCGACAATCGTAGGACAACAA
ATTTCAATGGTATATCTTGATCCATCTTTTCATCCACGGCAATTAGGCGC
GAAACCCGGCCCCAGGAGGGCTTTATTCGCGGCGAGGACCCTGGCATGGG
AAGGCGAAACTTTGAATGAGGAGCGTGGCCTGAAGAGAGAAGGCCTGGAA
ACCGTGTGATGCAACGTGGTAAAACGCACCCTCTGTGATTCCTGAGAGTG
GAACGTCGGTATTCACCAGCAGTGCTGAGCGGGACCAGGGTGGGGGGTGC
GGGCTAGCGTCGAGTTTTCTCAACGGAGAGGGGGCATGGAAGAAAATCAT
GACCATCTACTGCAGGCGCCCAAAGCTGCAATTGGCTACGAAGATAACTT
GGAGGGGGGTCGAGGAGGACGTAAGGGTCGTGTTCAAGTGCATGGGGGAG
GGCTTCGGACCACGATGTCCACGGTGGCCTCTGTTGGAGAAGGCTTGAAG
CGACGGGCGTCGGGGAAGCCAGAGAAGCCCAGACAAGGAGCTTTGCACGA
CCCCTTGGGCCACGACGATGATGATGCTTTCCGTGAACTGGACGAATGTT
TCCACAACGCTGACGGGCTGATGCCCCGGGTATCTCGGGAAGAGGACTTG
GTCTATCTCGGGGGAAAAGGAGGCCCTGCTCTGTTCGCGCTCCACCACCA
AGGTCAGGCGGGCATGTCTCCTCCGTTGCATGAGAGTGGAGACTTAAACG
TGTCCGGGAGCGAGGGCGAAAAGCTCTCGAATCGCGGTGTCTTTCTCACA
GGCAAGGAGGCGGCAAAGCTCCGGTCCCGGGAGCCACGCGCCGGAGACAC
CGTGTCGAGAGGAGAGACCGGAGGGGACATCCACCGTACGGAAAGTGCCT
CGAGTGACCAAACTTCCGGCTGCGACAGCCATGCCAGCAGCATCAGCACG
GGGGCTACGGCACTGAGCAAGAAGCGGCCGTGGAAGCCGGAGGAGGATGA
GTACTTGCGCGCTTTGGTTCACCGTCAAGGCGCGCGGGACTGGGGCCAGA
TTGCGGAACATTTTGAGAATCGGAACGGAAAGCAATGCCACCAGCGTTGG
AACTACTTTTTGAGCCCCACGGTTCACTCTGGGGCCTGGACCGCGGAGGA
GGACGAGAAGATCGTGAATTTCCAATGTCTTCTCGGCAATAAGTGGGCGC
GAATTGCTACCCATATACCCGGACGTACGGGGCACGCAGTGAAAAACCGG
GCCCACCAGATTGCGAACAAGATTAGGAAACGCGAGCGGAAACCTGCGCG
AAGCCAGGGGTGGGTGGAAGGGAAGGGAGGGGCGGGAGGGAGGGGCAAGA
AGACGGGGTCAAGCCACGCGTCGCCGGCCGTCGACGGAGCGAGGAGCACC
AGGCGCGCGCAGGGTTACCCTAATCTGAACCCTGACCTTTTCCCGGGCCC
CACGGCGGGAGCTTTGGCGCAGGGAGGAGAGGAGGACTCTGTGACGGAGG
CATGCTCCGGCAGCGATTCAGGCGGTGGCACGACTTGCTCGACCACGTCC
TCCTCCTCCTCCTCGGCGGTTGCGGCCCCAGGTCACACCCCGGGATCCGG
GCATAACCACCACCACCACCACCACCACCACCACCACCACCTCCATCCTG
AGGATGTTGCGGAGACGGCGGGGCCTCTGGGAATGGGCAAGGCACTGTCG
GGGGGGGTCCAGGGAGCCGGGAAGACGAAGATACCACCCGAGACCCACGG
TCGGGGGGGCAGTTCTGCCTTTATAAGTGCGTCTCTTGGCCCTCCTGTCG
CTTCGACAGCGCCAAAAAGGGCCAGTCCTCCAAGCAGAGAGGAGCATGTC
CCCGCACTGGATACTGCGGAAGAGAGCTTACCCGGGGAGAGCCCGTGTGC
GGCCACGGCACTGTCGTCGACGGCTCTCTCCCTGGCCGTGCCTCTGACCG
TGGGTGGCGTACAGCATTTCCTCACGGCGCAACGTGCGCTTGCCCAGCAC
AGAGGAGAAGAACGGCAGTGGGCAGACGGGACCGACGTGCCTCCCATCTT
GTACCATGAAGGCGTGGCCTACGTCCCTGTCGCGACCACCACCCTTCCCT
CCCCTTGTGGCCCTCCACCCTCTGCGTCGTCGGTCAAGTCCCCGACAGTC
GGCCAGGCGGGCCCGATGCGTGCCTGGGAAGCGGCTAAGAAGAACGTCAT
TTGCCTAGAGCGTCTGACCGAGCACCAGGCGCTCATGCAACATCACCTTC
GCCTCCAGCAGCAACGGTTGACGATGGAACGTCGACGTGAGGAAGCAGTG
GTGAATGAGGCTTGTGGCCTGGTGGATCTAGACGGCTTGCCAGTCGCAGA
CCATGAGCAGGAGAGCGCAGGGTCCGGCGGGGCCCGAAACATCATACATC
ACCACCACCACGACGATGAACAGCAGGAGCAGGATGAGGACGAGGAAGCG
GAGGCGAAGGTGGAGGCGGAAGTGGGGGGTTTGGACTTGCTACACCGTCA
CTATCATCACCACCATCACCACCATCATCCTGCTGGAGGGGGGGACGAGG
AGGAGGAGGACCTGGCCATCGTGCCTCCCACATTCGAGGAGGATGGACTG
TAATGTTCCTGGTGAGAGTGGCAAATAGAATGCCTCAGGAAGAGAGATGG
CTCGAGAAAGGCGTCGGCGCGGGTAGGGAGAAGAGGGGAAAGCTTTGTTT
AGAACGTATTAGACGTCTAGAGGTACCGGCTTGCACCCTTAGGCATGTTG
GTGAGAGGCTTGTCACGCCCTTGCGTGCACACATGAAGGAACAAGGCAAT
TAAATTAGAGGCTATGGAAACGCAAACTGGAGGTCGACAGACAGCATGCA
GCTGAAATCTGTGAGAACTCGTGACTGAGAGCGAAATGTAGGAGTCGCGA
CACAGGATGCATTGAGTGACAGCGTGCGTGCAAGAAACATCGCTATAGCT
CGCCATTAACAATGACGCGAATCTAAGATGGAGGTCTTATGTAAGGCTTA
AGGATAAATTGTGATAGCCTTCGCGCGGATGTCATTCAAAGGAAAGAAGC
TCATAAATATCGAGGGCTAGCTAACGGGTAAAGAATTTAATACACAAGTA
AATATTCGCTTCC

protein sequence of rna5750

>rna5750-protein ID=rna5750-protein|Name=rna5750|organism=Nannochloropsis gaditana|type=polypeptide|length=655bp
MLDQAWVFKKNGVVLWSRCVVPIKGPQEGFLGSSIVHHLIRTVLLEERAG
AAQATLDKHVCKWSLSNDQPGVVFVLVYNKNVFQNLTYVDEFLRRLKEDF
LATFSPATLVAALSRVNYDERFTNLLGAAEARARALRRGGNGSRKPPAMP
SVGVGHAIRRGEEAEGKGEDTDGGSSTEEDEEIGGDEGRRDDDTETERTG
TEEEEERVAAARRRLAARRAGAGRRKKKLAVGRATGAGVGGSGGVQEGGG
AEEGAGHVRKEGGKKPTTWHDGSGRMSKSAMEALDRSKRVESLDGLAEDH
QNEAAFQETRATYMPAAGETPEWEKEEVALDFLDGKETSTSSSATTSSSF
FSKLFARVTGNAVLSAAEVDPIMEEMRMLLIGKNVASEIAQDICESVRTS
LVGQKLPSLTSVKTVVREALERAIVRVLTPRKSTDLLRQVMAAKAEGRPY
SVVFVGINGVGKSTSLSKVCYYLKQHGLRVLIAACDTFRSGAVEQLKVHA
RCLEVDLYDKGYHKDPAAVAKAAIKEATDKGHDVVLVDTAGRMQNKEPLM
RALAKLVSDNQPDLVVFVGEALVGNDGIDQLTVFNQALANYSPPGKTHQI
DGIILTKFDTVDEKVGAALSMCYKTGQPILFVGTGQKYTHLKKLNVNLIL
NCLFG

mRNA from alignment at CM002466.1:754060..756145+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5750 ID=rna5750|Name=rna5750|organism=Nannochloropsis gaditana|type=mRNA|length=2086bp|location=Sequence derived from alignment at CM002466.1:754060..756145+ (Nannochloropsis gaditana)
CGCTTGACTCCTCGAATGACGTCCCGCTATTACGCGACACTCGATCTGTC
ACTCCCACTCAAAGCACCACCTTCCTCATACGTCACAGGATTGGCACCAC
ATTATCCGCGTCTCCGCCATGTTAGATCAGGCGTGGGTTTTCAAAAAGAA
TGGCGTTGTCCTCTGGTCTCGTTGCGTGGTTCCCATCAAGGGGCCTCAAG
AGGGTTTCCTGGGCTCCTCCATCGTCCATCATCTCATCCGCACCGTACTC
CTCGAAGAAAGGGCTGGCGCGGCACAGGCTACGTTGGATAAGCACGTGTG
CAAGTGGTCGCTGAGCAATGATCAGCCGGGGGTGGTGTTCGTGCTGGTGT
ACAACAAAAACGTCTTTCAAAATTTGACGTACGTGGACGAGTTTTTGCGA
CGCTTGAAGGAAGACTTTCTGGCAACCTTCTCCCCAGCGACGCTGGTCGC
TGCTTTAAGCCGCGTGAATTACGATGAGCGATTCACAAACTTGCTGGGTG
CGGCGGAagcacgggcacgggcaTTACGGCGGGGTGGGAATGGAAGCAGG
AAACCACCTGCCATGCCGTCTGTAGGGGTCGGCCATGCGatacgaagagg
agaagaagcggagggaaagggcgaggacACGGATGGTGGGAGCAGTAcag
aagaggatgaggaaataggaggagatgaagggcggagggacgaTGACACG
GAGACGGAAAGGACAggcaccgaggaggaagaggagcgtgTAGCGGCCGC
GAGGAGACGTCTGGCGGCACGGAGGGCTGGGGCGGGGCGGCGAAAGAAGA
AGCTGGCTGTGGGAAGGGCGAcaggggcgggcgtgggagggtcgggaggg
gtacaggaaggggggggagcggaggagggggcggggcacgtccggaagga
gggggggaaaaaaccCACCACGTGGCACGACGGAAGTGGCCGCATGAGCA
AATCGGCGATGGAGGCCCTGGACCGATCGAAACGGGTGGAGAGCCTGGAC
GGTTTGGCCGAGGATCATCAGAACGAGGCGGCTTTCCAAGAGACCAGGGC
CACGTACATGCCTGCAGCCGGTGAGACACCGgaatgggaaaaagaggaag
ttGCCCTTGATTTCCTGGACGGCAAGGagacctccacctcctcttcagcc
acaacttcctcctcttttttctccaaACTATTTGCGCGGGTGACGGGTAA
CGCCGTCCTGTcagcggcggaggtggatcctatcatggaggagatgagga
tgTTGCTGATTGGGAAAAACGTCGCGAGTGAAATCGCCCAGGACATTTGC
GAATCGGTGCGCACCTCCCTGGTGGGGCAGAAGCTGCCAAGCCTCACAAG
CGTGAAGACCGTTGTgcgggaggccttggaaagGGCCATCGTCCGTGTCT
TGACCCCGCGAAAGTCCACTGACCTCTTGCGCCAAGtcatggcggccaag
gctgAGGGACGGCCTTATTCGGTCGTTTTCGTGGGTATCAACGGCGTGGG
GAagtccacctccctctccaaggTGTGCTACTACCTGAAGCAGCACGGTC
TCCGGGTCTTAATTGCCGCCTGCGACACCTTTCGGTCCGGCGCGGTGGAG
CAACTGAAGGTGCACGCCCGGTGCTTGGAAGTCGACCTCTACGACAAAGG
CTACCACAAAGACCCGGCAGCCGTGGCGAAAGCGGCGATCAAAGAGGCTA
CCGACAAGGGCCACGACGTCGTCTTGGTGGACACGGCGGGAAGGATGCAA
AACAAGGAGCCTCTGATGCGCGCGCTCGCCAAGTTAGTCTCTGACAACCA
GCCTGATTTGGTCGTGTTCGTGGGGGAGGCCTTGGTCGGCAACGACGGCA
TCGACCAGCTTACCGTCTTCAACCAGGCGCTTGCCAATTATTCGCCGCCA
GGGAAAACGCACCAGATCGATGGCATCATCCTGACGAAGTTCGACACTGT
GGACGAGAAAGTGGGTGCGGCCCTATCCATGTGCTACAAGACGGGACAGC
CCATTCTTTTCGTCGGTACGGGGCAAAAATACACGCATCTCAAGAAACTC
AATGTCAACTTGATCTTGAACTGCCTTTTTGGGTAA

Coding sequence (CDS) from alignment at CM002466.1:754060..756145+

>rna5750 ID=rna5750|Name=rna5750|organism=Nannochloropsis gaditana|type=CDS|length=1968bp|location=Sequence derived from alignment at CM002466.1:754060..756145+ (Nannochloropsis gaditana)
ATGTTAGATCAGGCGTGGGTTTTCAAAAAGAATGGCGTTGTCCTCTGGTC
TCGTTGCGTGGTTCCCATCAAGGGGCCTCAAGAGGGTTTCCTGGGCTCCT
CCATCGTCCATCATCTCATCCGCACCGTACTCCTCGAAGAAAGGGCTGGC
GCGGCACAGGCTACGTTGGATAAGCACGTGTGCAAGTGGTCGCTGAGCAA
TGATCAGCCGGGGGTGGTGTTCGTGCTGGTGTACAACAAAAACGTCTTTC
AAAATTTGACGTACGTGGACGAGTTTTTGCGACGCTTGAAGGAAGACTTT
CTGGCAACCTTCTCCCCAGCGACGCTGGTCGCTGCTTTAAGCCGCGTGAA
TTACGATGAGCGATTCACAAACTTGCTGGGTGCGGCGGAagcacgggcac
gggcaTTACGGCGGGGTGGGAATGGAAGCAGGAAACCACCTGCCATGCCG
TCTGTAGGGGTCGGCCATGCGatacgaagaggagaagaagcggagggaaa
gggcgaggacACGGATGGTGGGAGCAGTAcagaagaggatgaggaaatag
gaggagatgaagggcggagggacgaTGACACGGAGACGGAAAGGACAggc
accgaggaggaagaggagcgtgTAGCGGCCGCGAGGAGACGTCTGGCGGC
ACGGAGGGCTGGGGCGGGGCGGCGAAAGAAGAAGCTGGCTGTGGGAAGGG
CGAcaggggcgggcgtgggagggtcgggaggggtacaggaagggggggga
gcggaggagggggcggggcacgtccggaaggagggggggaaaaaaccCAC
CACGTGGCACGACGGAAGTGGCCGCATGAGCAAATCGGCGATGGAGGCCC
TGGACCGATCGAAACGGGTGGAGAGCCTGGACGGTTTGGCCGAGGATCAT
CAGAACGAGGCGGCTTTCCAAGAGACCAGGGCCACGTACATGCCTGCAGC
CGGTGAGACACCGgaatgggaaaaagaggaagttGCCCTTGATTTCCTGG
ACGGCAAGGagacctccacctcctcttcagccacaacttcctcctctttt
ttctccaaACTATTTGCGCGGGTGACGGGTAACGCCGTCCTGTcagcggc
ggaggtggatcctatcatggaggagatgaggatgTTGCTGATTGGGAAAA
ACGTCGCGAGTGAAATCGCCCAGGACATTTGCGAATCGGTGCGCACCTCC
CTGGTGGGGCAGAAGCTGCCAAGCCTCACAAGCGTGAAGACCGTTGTgcg
ggaggccttggaaagGGCCATCGTCCGTGTCTTGACCCCGCGAAAGTCCA
CTGACCTCTTGCGCCAAGtcatggcggccaaggctgAGGGACGGCCTTAT
TCGGTCGTTTTCGTGGGTATCAACGGCGTGGGGAagtccacctccctctc
caaggTGTGCTACTACCTGAAGCAGCACGGTCTCCGGGTCTTAATTGCCG
CCTGCGACACCTTTCGGTCCGGCGCGGTGGAGCAACTGAAGGTGCACGCC
CGGTGCTTGGAAGTCGACCTCTACGACAAAGGCTACCACAAAGACCCGGC
AGCCGTGGCGAAAGCGGCGATCAAAGAGGCTACCGACAAGGGCCACGACG
TCGTCTTGGTGGACACGGCGGGAAGGATGCAAAACAAGGAGCCTCTGATG
CGCGCGCTCGCCAAGTTAGTCTCTGACAACCAGCCTGATTTGGTCGTGTT
CGTGGGGGAGGCCTTGGTCGGCAACGACGGCATCGACCAGCTTACCGTCT
TCAACCAGGCGCTTGCCAATTATTCGCCGCCAGGGAAAACGCACCAGATC
GATGGCATCATCCTGACGAAGTTCGACACTGTGGACGAGAAAGTGGGTGC
GGCCCTATCCATGTGCTACAAGACGGGACAGCCCATTCTTTTCGTCGGTA
CGGGGCAAAAATACACGCATCTCAAGAAACTCAATGTCAACTTGATCTTG
AACTGCCTTTTTGGGTAA

Synonyms

Publications