rna5747, rna5747 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5747
Unique Name	rna5747
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1204
Alignment location	CM002466.1:747908..749606 +

Link to JBrowse

Properties


Property Name	Value
Product	ubiquitin carboxyl-terminal hydrolase family1
Orig transcript id	gnl\|cribi\|Naga_100086g15.3836.mrna
Orig protein id	gnl\|cribi\|Naga_100086g15.3836
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:747908..749606 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100086g15	gene5552	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5747	rna5747-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24936.1	cds5732	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:747908..749606+
coding sequence from alignment at CM002466.1:747908..749606+

mRNA sequence

>rna5747 ID=rna5747|Name=rna5747|organism=Nannochloropsis gaditana|type=mRNA|length=1204bp
TGCTTCGCGAGTCACGAAGAACGACGCTAGATTGAAAACGAGAAAAGCGA
TAGCGCAACTGGTGTTTTTTTCCCCACGAGCAACTCAGTATAACTCCATG
GATACAGCATCGATTGACGTTTATCTGACCTTTCAATATTTTTGTTGCCT
TCTTTAGAGGCCTCACTTCCAACTCCGCTCTATCTAACCTCCTGCCTGTC
GAACCCCGTGGACAATGAATCATTCCTTTCAATGACTTGAAGCTATTGCT
TCTTACCTTGTCCCCATACAGCAGCACCCACAGCCATGCGTCCGACACTG
CAACCTGCTATGCTTTTTCTCCTGATCAGTTGCATTAGCGTCCAATCTTT
TGTTGTACGGGGAAAGATGCCTTCGTCTTGCCGCAGGACAACGGTGGCAA
TTTCTTCAGCATCGTCATCCTTGCCATCCTCAAATCCCATCATCATCTCC
ATCCGCCGGCTTCTGAGTTTTGCTCCGATTCTTCTCCTCGGTCCGTTTTT
GGATGTACCCACTGCACACGCCATTTCCGGTGGAGGAAAAGATTACGCAG
AGGCCAAAATTGCAGATCAAGACTTCAGTGGAAAAGACTTCAGTAAAAAA
GACTTTTCGGGGGCTTTTGCGCAACGCGCCAATTTCAAGGGAGCAAAGCT
TATGGGTGCGCGTTTTTACAAGTCGGCCTTGACTGAGGCTGATTTTACCG
GAGCCGACCTAACCAGCGCCTCCTTCGAGGGAGCGAATATGGTCGACGCT
ATTCTCAAGGACGCGATCGTCAACAACGCCTACTTCACGGAAACAGTCCT
GAAAGTTGGTTCCATTGAGGGTGCGGATTTCTCCGACACGTTGCTCGACC
GTTTCGTTCAAAAAAAGCTCTGCGAGAAGGCGACAGGCACGAATCCCAAG
ACCAAGGTAGACACCCGCGAGTCACTGTTGTGCGACTAAGGCTTCAGATA
AGCTAGGCAAAGCAGTGCCCCGAGGTGAAAACTCTCTTTTTTTTTGAAAA
AAAAGCTAAAAAAGAATGGGTTTTGATGAAAGAGGGAGGAAAGAGGTAGA
TTATGTGCGAGCCTTGCCGTGGAGAGGATCGTCATTACCATAAGGGCTCT
TCCGCCGGTGCGCCATCCTCGCAGGGCCTTTTAAAAGGTCATGGCAAAGT
GACCACCTCCATCAACTAGCAACAAAGGAAAAATATAAGAGATGCGGTTA
GTCG

protein sequence of rna5747

>rna5747-protein ID=rna5747-protein|Name=rna5747|organism=Nannochloropsis gaditana|type=polypeptide|length=321bp
MKGKSADLRQDEGIFPRTTKDWTLMQLIRRKSIAGCSVGRMAVGAAVWGQ
GDKMMTSNDTSGTSPPSMAKCDRWPALESDAEVYTALLHTLLSPSSTPSD
TRTPSCPFFFQDVFSLDDDYLGFVHGETLALILAYDDRALNPSQESPPDP
QLPIAPIFIKQLPVLDNACGTIALLHAIINTLPASTIPSSSLLAKFVSPI
QAGETSFTSESLGIRLDAHEGIRAAHCEHAAQGQSEQVQGDAVRYHFICL
IPNPLSPYPAVLELDGLKAHPIIHVGGSENGKKGETFLQMGAMVLKREFL
AQFSNADETQINVLALVREDP

mRNA from alignment at CM002466.1:747908..749606+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5747 ID=rna5747|Name=rna5747|organism=Nannochloropsis gaditana|type=mRNA|length=1699bp|location=Sequence derived from alignment at CM002466.1:747908..749606+ (Nannochloropsis gaditana)
CCGTTGTCCTTAGTATTTTTTATTCGAAATCAGATAAGATGTGTGTCCCT
ATGGATACTTTCAGGGCACTAAGAAAGACGTCACGGACATGAAGGGAAAA
TCAGCTGACCTGCGGCAAGACGAAGGCATCTTTCCCCGTACAACAAAAGA
TTGGACGCTAATGCAACTGATCAGGAGAAAAAGCATAGCAGGTTGCAGTG
TCGGACGCATGGCTGTGGGTGCTGCTGTATGGGGACAAGGTAAGAAGCAA
TAGCTTCAAGTCATTGAAAGGAATGATTCATTGTCCACGGGGTTCgacag
gcaggaggttagATAGAGCGGAGTTGGAAGTGAGGCCTCTAAAGAAGGCA
ACAAAAATATTGAAAGGTCAGATAAACGTCAATCGATGCTGTATCCATGG
AGTTATACTGAGTTGCTcgtggggaaaaaaacaCCAGTTGCGCTATCGCT
TTTCTCGTTTTCAATCTAGCGTCGTTCTTCGTGACTCGCGAAGCATGAGA
AATACAGACTGTCACACAAAACGCTTTAATATATCACAGGGGATAAAATG
ATGACGAGTAATGACACGTCTGGTACAAGTCCACCCTCCATGGCAAAGTG
CGATCGTTGGCCTGCATTGGAGAGCGATGCGGAGGTCTATACGGCATTGC
TACATACACTATTAAGCCCTTCATCTACGCCTTCAGACACCCGCACCCCT
TCAtgtccattttttttccaagATGTATTCTCTTTGGACGATGATTACTT
GGGGTTTGTGCACGGAGAGACGCTGGCATTGATACTCGCGTATGACGATC
GCGCGCTCAATCCGAGTCAAGAGTCTCCACCTGATCCTCAACTGCCAATC
GCACCTATTTTTATCAAGCAActtcccgtcctcgacaATGCCTGCGGCAC
GATTGCGTTACTTCATGCAATAATCAACACACTGCCAGCTTCCACCATTC
CATCATCCTCGCTTCTTGCCAAGTTTGTGTCACCGATACAGGCTGGGGAA
ACGTCATTTACAAGTGAAAGCTTAGGAATACGCTTGGACGCTCACGAAGG
AATTCGCGCCGCACACTGGTACGTTCCCTAAAGATAACATGTAAAATCAT
GTATCTCCCTATGTATAAAgtgttctttccctcttcgagTTTGCTCTGGG
ATCCGCCAATTGGGGGGCCTCGTTATTACTTTGGCATTTCGAATTCGTAT
CTGATTTCCTATTTTAGGTCAATGGCGTACGTCAATAGATGAAAATTTGT
TGTGATAAGTTAATTGTTTTATGAACGAGAGAAATATTAACACCCCTGAC
GATCTTCTCGCATTACCATCTCACAGTGAGCATGCTGCTCAAGGACAGAG
CGAGCAAGTCCAAGGTGATGCAGTGCGCTATCACTTCATCTGTTTGATTC
CTAATCCGTTATCGCCCTATCCAGCTGTTCTTGAGCTTGACGGTCTTAAA
GCACACCCAATCATACACGTTGGGGGAAGTGAgaatggaaaaaagggaga
aacGTTTTTGCAAATGGGCGCAATGGTGTTGAAGCGTGAGTTCCTGGCGC
AATTCAGCAATGCAGATGAGACACAAATAAATGTTCTGGCCCTTGTTCGC
GAGGATCCATGAAAGTATGAAAAAAAGACAAGGCGGTACTACCCGTCTTC
AAATTTTGTCGCAGGCAAAGAAAAACAAGGAGGTACTACGCGTCATCAA

Coding sequence (CDS) from alignment at CM002466.1:747908..749606+

>rna5747 ID=rna5747|Name=rna5747|organism=Nannochloropsis gaditana|type=CDS|length=2898bp|location=Sequence derived from alignment at CM002466.1:747908..749606+ (Nannochloropsis gaditana)
ATGAAGGGAAAATCAGCTGACCTGCGGCAAGACGAAGGCATCTTTCCCCG
TACAACAAAAGATTGGACGCTAATGCAACTGATCAGGAGAAAAAGCATAG
CAGGTTGCAGTGTCGGACGCATGGCTGTGGGTGCTGCTGTATGGGGACAA
GGGGATAAAATGATGACGAGTAATGACACGTCTGGTACAAGTCCACCCTC
CATGGCAAAGTGCGATCGTTGGCCTGCATTGGAGAGCGATGCGGAGGTCT
ATACGGCATTGCTACATACACTATTAAGCCCTTCATCTACGCCTTCAGAC
ACCCGCACCCCTTCAtgtccattttttttccaagATGTATTCTCTTTGGA
CGATGATTACTTGGGGTTTGTGCACGGAGAGACGCTGGCATTGATACTCG
CGTATGACGATCGCGCGCTCAATCCGAGTCAAGAGTCTCCACCTGATCCT
CAACTGCCAATCGCACCTATTTTTATCAAGCAActtcccgtcctcgacaA
TGCCTGCGGCACGATTGCGTTACTTCATGCAATAATCAACACACTGCCAG
CTTCCACCATTCCATCATCCTCGCTTCTTGCCAAGTTTGTGTCACCGATA
CAGGCTGGGGAAACGTCATTTACAAGTGAAAGCTTAGGAATACGCTTGGA
CGCTCACGAAGGAATTCGCGCCGCACACTGTGAGCATGCTGCTCAAGGAC
AGAGCGAGCAAGTCCAAGGTGATGCAGTGCGCTATCACTTCATCTGTTTG
ATTCCTAATCCGTTATCGCCCTATCCAGCTGTTCTTGAGCTTGACGGTCT
TAAAGCACACCCAATCATACACGTTGGGGGAAGTGAgaatggaaaaaagg
gagaaacGTTTTTGCAAATGGGCGCAATGGTGTTGAAGCGTGAGTTCCTG
GCGCAATTCAGCAATGCAGATGAGACACAAATAAATGTTCTGGCCCTTGT
TCGCGAGGATCCATGAATGAAGGGAAAATCAGCTGACCTGCGGCAAGACG
AAGGCATCTTTCCCCGTACAACAAAAGATTGGACGCTAATGCAACTGATC
AGGAGAAAAAGCATAGCAGGTTGCAGTGTCGGACGCATGGCTGTGGGTGC
TGCTGTATGGGGACAAGGGGATAAAATGATGACGAGTAATGACACGTCTG
GTACAAGTCCACCCTCCATGGCAAAGTGCGATCGTTGGCCTGCATTGGAG
AGCGATGCGGAGGTCTATACGGCATTGCTACATACACTATTAAGCCCTTC
ATCTACGCCTTCAGACACCCGCACCCCTTCAtgtccattttttttccaag
ATGTATTCTCTTTGGACGATGATTACTTGGGGTTTGTGCACGGAGAGACG
CTGGCATTGATACTCGCGTATGACGATCGCGCGCTCAATCCGAGTCAAGA
GTCTCCACCTGATCCTCAACTGCCAATCGCACCTATTTTTATCAAGCAAc
ttcccgtcctcgacaATGCCTGCGGCACGATTGCGTTACTTCATGCAATA
ATCAACACACTGCCAGCTTCCACCATTCCATCATCCTCGCTTCTTGCCAA
GTTTGTGTCACCGATACAGGCTGGGGAAACGTCATTTACAAGTGAAAGCT
TAGGAATACGCTTGGACGCTCACGAAGGAATTCGCGCCGCACACTGTGAG
CATGCTGCTCAAGGACAGAGCGAGCAAGTCCAAGGTGATGCAGTGCGCTA
TCACTTCATCTGTTTGATTCCTAATCCGTTATCGCCCTATCCAGCTGTTC
TTGAGCTTGACGGTCTTAAAGCACACCCAATCATACACGTTGGGGGAAGT
GAgaatggaaaaaagggagaaacGTTTTTGCAAATGGGCGCAATGGTGTT
GAAGCGTGAGTTCCTGGCGCAATTCAGCAATGCAGATGAGACACAAATAA
ATGTTCTGGCCCTTGTTCGCGAGGATCCATGAATGAAGGGAAAATCAGCT
GACCTGCGGCAAGACGAAGGCATCTTTCCCCGTACAACAAAAGATTGGAC
GCTAATGCAACTGATCAGGAGAAAAAGCATAGCAGGTTGCAGTGTCGGAC
GCATGGCTGTGGGTGCTGCTGTATGGGGACAAGGGGATAAAATGATGACG
AGTAATGACACGTCTGGTACAAGTCCACCCTCCATGGCAAAGTGCGATCG
TTGGCCTGCATTGGAGAGCGATGCGGAGGTCTATACGGCATTGCTACATA
CACTATTAAGCCCTTCATCTACGCCTTCAGACACCCGCACCCCTTCAtgt
ccattttttttccaagATGTATTCTCTTTGGACGATGATTACTTGGGGTT
TGTGCACGGAGAGACGCTGGCATTGATACTCGCGTATGACGATCGCGCGC
TCAATCCGAGTCAAGAGTCTCCACCTGATCCTCAACTGCCAATCGCACCT
ATTTTTATCAAGCAActtcccgtcctcgacaATGCCTGCGGCACGATTGC
GTTACTTCATGCAATAATCAACACACTGCCAGCTTCCACCATTCCATCAT
CCTCGCTTCTTGCCAAGTTTGTGTCACCGATACAGGCTGGGGAAACGTCA
TTTACAAGTGAAAGCTTAGGAATACGCTTGGACGCTCACGAAGGAATTCG
CGCCGCACACTGTGAGCATGCTGCTCAAGGACAGAGCGAGCAAGTCCAAG
GTGATGCAGTGCGCTATCACTTCATCTGTTTGATTCCTAATCCGTTATCG
CCCTATCCAGCTGTTCTTGAGCTTGACGGTCTTAAAGCACACCCAATCAT
ACACGTTGGGGGAAGTGAgaatggaaaaaagggagaaacGTTTTTGCAAA
TGGGCGCAATGGTGTTGAAGCGTGAGTTCCTGGCGCAATTCAGCAATGCA
GATGAGACACAAATAAATGTTCTGGCCCTTGTTCGCGAGGATCCATGA

Synonyms

Publications