EWM24936.1, cds5732 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24936.1 vs. NCBI_GenBank
Match: gi|585106566|gb|EWM24936.1| (ubiquitin carboxyl-terminal hydrolase family1 [Nannochloropsis gaditana]) HSP 1 Score: 663.685 bits (1711), Expect = 0.000e+0 Identity = 321/321 (100.00%), Postives = 321/321 (100.00%), Query Frame = 0
Query: 1 MKGKSADLRQDEGIFPRTTKDWTLMQLIRRKSIAGCSVGRMAVGAAVWGQGDKMMTSNDTSGTSPPSMAKCDRWPALESDAEVYTALLHTLLSPSSTPSDTRTPSCPFFFQDVFSLDDDYLGFVHGETLALILAYDDRALNPSQESPPDPQLPIAPIFIKQLPVLDNACGTIALLHAIINTLPASTIPSSSLLAKFVSPIQAGETSFTSESLGIRLDAHEGIRAAHCEHAAQGQSEQVQGDAVRYHFICLIPNPLSPYPAVLELDGLKAHPIIHVGGSENGKKGETFLQMGAMVLKREFLAQFSNADETQINVLALVREDP 321
MKGKSADLRQDEGIFPRTTKDWTLMQLIRRKSIAGCSVGRMAVGAAVWGQGDKMMTSNDTSGTSPPSMAKCDRWPALESDAEVYTALLHTLLSPSSTPSDTRTPSCPFFFQDVFSLDDDYLGFVHGETLALILAYDDRALNPSQESPPDPQLPIAPIFIKQLPVLDNACGTIALLHAIINTLPASTIPSSSLLAKFVSPIQAGETSFTSESLGIRLDAHEGIRAAHCEHAAQGQSEQVQGDAVRYHFICLIPNPLSPYPAVLELDGLKAHPIIHVGGSENGKKGETFLQMGAMVLKREFLAQFSNADETQINVLALVREDP
Sbjct: 1 MKGKSADLRQDEGIFPRTTKDWTLMQLIRRKSIAGCSVGRMAVGAAVWGQGDKMMTSNDTSGTSPPSMAKCDRWPALESDAEVYTALLHTLLSPSSTPSDTRTPSCPFFFQDVFSLDDDYLGFVHGETLALILAYDDRALNPSQESPPDPQLPIAPIFIKQLPVLDNACGTIALLHAIINTLPASTIPSSSLLAKFVSPIQAGETSFTSESLGIRLDAHEGIRAAHCEHAAQGQSEQVQGDAVRYHFICLIPNPLSPYPAVLELDGLKAHPIIHVGGSENGKKGETFLQMGAMVLKREFLAQFSNADETQINVLALVREDP 321
BLAST of EWM24936.1 vs. NCBI_GenBank
Match: gi|1173953655|gb|OQS01183.1| (hypothetical protein ACHHYP_01713 [Achlya hypogyna]) HSP 1 Score: 103.99 bits (258), Expect = 7.928e-23 Identity = 68/207 (32.85%), Postives = 102/207 (49.28%), Query Frame = 0
Query: 68 MAKCDRWPALESDAEVYTALLHTLLSPSSTPSDTRTPSCPFFFQDVFSLDDDYLGFVHGETLALILAYDDRALNPSQESPPDPQLPIAPIFIKQLPVLDNACGTIALLHAIINTLPASTIPSSSLLAKFVSPIQAGETSFTSESLGIRLDAHEGIRAAHCEHAAQGQSEQV-QGDAVRYHFICLIPNPLSPYPAVLELDGLKAHPII 273
M WP LES+ +V+T+ L L PS +F +VF LD+D LGFV A+I+ ++ P+ P + ++KQ P LD ACG IA +HA++N A I S+L+KF A T E+ + L+ + H HA +GQ++Q GD V++HFI + N ++ELDG+K +I
Sbjct: 1 MTDAFNWPPLESNPDVFTSYLRDLGLPSD-----------WFVSEVFGLDEDCLGFVPRPVAAVIVTFESLKKTPTDGIP----VTTDGYYMKQTPKLDYACGVIACIHAVLNNTDAVQIHDGSILSKFA----AATKDQTPEARALMLETMREFQEVHKHHANEGQTDQASSGDDVKHHFIAFVKNSRG---QLIELDGMKKGALI 185
BLAST of EWM24936.1 vs. NCBI_GenBank
Match: gi|813125895|ref|XP_012196855.1| (hypothetical protein SPRG_02878 [Saprolegnia parasitica CBS 223.65] >gi|641538570|gb|KDO32401.1| hypothetical protein SPRG_02878 [Saprolegnia parasitica CBS 223.65]) HSP 1 Score: 99.7525 bits (247), Expect = 3.667e-21 Identity = 65/202 (32.18%), Postives = 101/202 (50.00%), Query Frame = 0
Query: 73 RWPALESDAEVYTALLHTLLSPSSTPSDTRTPSCPFFFQDVFSLDDDYLGFVHGETLALILAYDDRALNPSQESPPDPQLPIAPIFIKQLPVLDNACGTIALLHAIINTLPASTIPSSSLLAKFVSPIQAGETSFTSESLGIRLDAHEGIRAAHCEHAAQGQSEQ-VQGDAVRYHFICLIPNPLSPYPAVLELDGLKAHPII 273
WP LES+ EV+T L L P +F +VF LD+D LGFV A+I+ ++ +L + P+ + ++KQ P LD ACG IA +HA++N L + +S+LAKF +A T + L+ + H HA +GQ++Q GD V++HFI + N ++ELDG+K ++
Sbjct: 8 NWPPLESNPEVFTKYLLELGLPGD-----------WFVSEVFGLDEDCLGFVPRPVAAVIVTFE--SLKKLETDAPEA---VTDYYMKQTPKLDYACGVIACIHAVLNNLDKVQLVENSILAKFYDATKAQ----TPADRALTLETMREFQDVHKAHANEGQTDQAANGDDVKHHFIAFVRNSRGQ---LVELDGMKKSALV 186
BLAST of EWM24936.1 vs. NCBI_GenBank
Match: gi|678312597|emb|CDW88284.1| (ubiquitin carboxyl-terminal hydrolase isozyme l3 [Stylonychia lemnae]) HSP 1 Score: 98.9821 bits (245), Expect = 6.419e-21 Identity = 65/209 (31.10%), Postives = 105/209 (50.24%), Query Frame = 0
Query: 73 RWPALESDAEVYTALLHTLLSPSSTPSDTRTPSCPFFFQDVFSLDDDYLGFVHGETLALILAYDDRALNPSQESPPDPQLPIAPIFIKQLPVLDNACGTIALLHAIINTLPASTIPSSSLLAKFVSPIQAGETSFTSESLGIRLDAHEGIRAAHCEHAAQGQSE-QVQGDAVRYHFICLIPNPLSPYPAVLELDGLKAHPIIHVGGSEN 280
WP LES+ EV+T +H + P + +VF LD+D L FV +A+I +++ L +E+ + ++KQ LDNACG IA +H+ +N L T+ S+L KF + ++ T E L+ + + H ++AAQGQS D VR+HFI + L+ ++ELDG+K+ P++ SE+
Sbjct: 8 NWPPLESNPEVFTDYMHKIGLPED-----------WVVGEVFGLDEDCLSFVPKPVVAVIATFEN--LKKGEEAKSEHTHAETNYYMKQTHSLDNACGIIACIHSALNNLDKFTLAEGSVLQKFHTAVK----DLTPEERATSLEGNSEFQETHKQYAAQGQSNLAATQDDVRHHFIAFV---LNSKGQLVELDGVKSGPLVIKDHSED 196
BLAST of EWM24936.1 vs. NCBI_GenBank
Match: gi|669137676|ref|XP_008604406.1| (hypothetical protein SDRG_00696 [Saprolegnia diclina VS20] >gi|530743595|gb|EQC41837.1| hypothetical protein SDRG_00696 [Saprolegnia diclina VS20]) HSP 1 Score: 98.5969 bits (244), Expect = 9.142e-21 Identity = 66/202 (32.67%), Postives = 101/202 (50.00%), Query Frame = 0
Query: 73 RWPALESDAEVYTALLHTLLSPSSTPSDTRTPSCPFFFQDVFSLDDDYLGFVHGETLALILAYDDRALNPSQESPPDPQLPIAPIFIKQLPVLDNACGTIALLHAIINTLPASTIPSSSLLAKFVSPIQAGETSFTSESLGIRLDAHEGIRAAHCEHAAQGQSEQ-VQGDAVRYHFICLIPNPLSPYPAVLELDGLKAHPII 273
WP LES+ EV+T L L P D +F +VF LD+D LGFV A+I+ ++ +L + P+ + ++KQ P LD ACG IA +HA++N L + S+LAKF +A T + L+ + H HA +GQ++Q GD V++HFI + N ++ELDG+K ++
Sbjct: 6 NWPPLESNPEVFTKYLLAL----GLPGD-------WFVSEVFGLDEDCLGFVPRPVAAVIVTFE--SLKKLETDAPEA---VTDYYMKQTPKLDYACGVIACIHAVLNNLDKLQLVEHSILAKFYDATKAQ----TPADRALTLETMREFQEVHKAHANEGQTDQAANGDDVKHHFIAFVRNSRGQ---LVELDGMKKSALV 184
BLAST of EWM24936.1 vs. NCBI_GenBank
Match: gi|698785651|ref|XP_009825869.1| (hypothetical protein H257_03463 [Aphanomyces astaci] >gi|574118697|gb|ETV84177.1| hypothetical protein H257_03463 [Aphanomyces astaci]) HSP 1 Score: 96.6709 bits (239), Expect = 5.687e-20 Identity = 67/201 (33.33%), Postives = 108/201 (53.73%), Query Frame = 0
Query: 74 WPALESDAEVYTALLHTLLSPSSTPSDTRTPSCPFFFQDVFSLDDDYLGFVHGETLALILAYDDRALNPSQESPPDPQLPIAPIFIKQLPVLDNACGTIALLHAIINTLPASTIPSSSLLAKFVSPIQAGETSFTSESLGIRLDAHEGIRAAHCEHAAQGQSEQ-VQGDAVRYHFICLIPNPLSPYPAVLELDGLKAHPII 273
WP LES+ EV+T L+ L PSD +F +VF LDDD LGFV +A+I+ ++ +L ++ + A F+KQ P LD ACG IA +H+++N+L + T+ +S+L K+ +A +T ++ L+ + H +A+ GQS D V++HF+ + N L ++ELDGLK P++
Sbjct: 23 WPPLESNPEVFTEYLYQL----GLPSD-------WFVGEVFGLDDDSLGFVPRPVVAVIVTFE--SLKKETDAVAAAK---ADFFMKQSPKLDYACGVIACIHSVLNSLDSITLVENSILEKY---YRATKTQSPADR-ATTLENMTEFQEVHTSYASLGQSSVPTAEDDVKHHFVTFVQNALG---QLIELDGLKKGPVV 200
BLAST of EWM24936.1 vs. NCBI_GenBank
Match: gi|403342795|gb|EJY70721.1| (ubiquitin carboxyl-terminal hydrolase isozyme L3 (macronuclear) [Oxytricha trifallax]) HSP 1 Score: 95.9005 bits (237), Expect = 1.006e-19 Identity = 65/202 (32.18%), Postives = 101/202 (50.00%), Query Frame = 0
Query: 73 RWPALESDAEVYTALLHTLLSPSSTPSDTRTPSCPFFFQDVFSLDDDYLGFVHGETLALILAYDDRALNPSQESPPDPQLPIAPIFIKQLPVLDNACGTIALLHAIINTLPASTIPSSSLLAKFVSPIQAGETSFTSESLGIRLDAHEGIRAAHCEHAAQGQSEQVQG-DAVRYHFICLIPNPLSPYPAVLELDGLKAHPII 273
WP LES+ +V+T LH L P++ + +VF LD++ L FV +A+I +++ L +ES ++KQ VLDNACG IA +H+++N L + S+L +F + A + E L+ + + H +AAQGQS D V++HFI I N ++ELDG+K+ PII
Sbjct: 9 NWPPLESNPDVFTDYLHNLGVPAN-----------WVVGEVFGLDEECLQFVPQPVVAVIATFEN--LKKGEESKEPTAHADVSYYMKQTHVLDNACGVIACIHSVLNNLDKIELGKGSVLERFHQSVSAQ----SPEERAKSLETNAEFQETHKTYAAQGQSNLASNQDDVKHHFIAFIVNAKG---QLVELDGIKSGPII 190
BLAST of EWM24936.1 vs. NCBI_GenBank
Match: gi|673019220|ref|XP_008863571.1| (hypothetical protein H310_01987 [Aphanomyces invadans] >gi|574480485|gb|ETW07478.1| hypothetical protein H310_01987 [Aphanomyces invadans]) HSP 1 Score: 91.6633 bits (226), Expect = 3.236e-18 Identity = 64/201 (31.84%), Postives = 103/201 (51.24%), Query Frame = 0
Query: 74 WPALESDAEVYTALLHTLLSPSSTPSDTRTPSCPFFFQDVFSLDDDYLGFVHGETLALILAYDDRALNPSQESPPDPQLPIAPIFIKQLPVLDNACGTIALLHAIINTLPASTIPSSSLLAKFVSPIQAGETSFTSESLGIRLDAHEGIRAAHCEHAAQGQSEQVQGDA-VRYHFICLIPNPLSPYPAVLELDGLKAHPII 273
WP LES+ EV+T L+ L PSD +F ++F LDDD GFV +A+I+ ++ +++ P + A F+KQ P LD ACG IA +H+++N L + T+ +S+L K+ + + + +L + E H +A+ GQS + V++HF+ + N +LELDGLK PI+
Sbjct: 11 WPPLESNPEVFTEYLYQL----GLPSD-------WFVGEMFGLDDDSHGFVPRPVVAVIVTFESL----KKDTAETPAVAKADFFMKQSPKLDYACGVIACIHSVLNNLGSITLVENSILEKYHRTTKTQSPADRATTLENMTEFQE----VHTSYASLGQSTVPSTEEDVKHHFVTFVQNAQG---QLLELDGLKKGPIV 189
BLAST of EWM24936.1 vs. NCBI_GenBank
Match: gi|923138967|ref|XP_013762948.1| (ubiquitin carboxyl-terminal esterase L3 [Thecamonas trahens ATCC 50062] >gi|906552724|gb|KNC45967.1| ubiquitin carboxyl-terminal esterase L3 [Thecamonas trahens ATCC 50062]) HSP 1 Score: 91.6633 bits (226), Expect = 4.186e-18 Identity = 81/255 (31.76%), Postives = 117/255 (45.88%), Query Frame = 0
Query: 72 DRWPALESDAEVYTALLHTLLSPSSTPSDTRTPSCPFFFQDVFSLDDDYLGFVHGETLALILAYD---DRALNPSQES-------PPDPQLPIAPIFIKQLPVLDNACGTIALLHAIINTLPASTIPSSSLLAKFVSPIQAGETSFTSESLGIRLDAHEGIRAAHCEHAAQGQSEQVQGDA-VRYHFICLIPNPLSPYPAVLELDGLKAHPIIHVGGSENGKKGETFLQMGAMVLKREFLAQFSNADETQINVLA 315
DRW A+ES+ EV+T L P C F D++ LDDD L F+ +A++L ++ P ES P DP P ++ Q+ L NACGTIA++HA+ NT+ A + S+L F+ + E+ A+E IR+ H A+QGQS Q + +A + HFIC + Y ELDG K PI S +G A +K F+A N DE +++A
Sbjct: 11 DRWKAVESNPEVFTNFAANLGVPEG--------KC--MFSDIWGLDDDMLAFLPQPVMAVLLCRPSGLNKVDRPDPESVYGDDGAPADP-----PFYMTQIDELGNACGTIAMVHALANTVSALDLADDSILRGFLDSVAEATPLVRGETFA----ANERIRSLHNGTASQGQSAQPESEASIAAHFICFAFHDGILY----ELDGRKPGPIPLARCSADG-----VAAAAAAAIKTYFMA--PNPDEYNFSMVA 235
BLAST of EWM24936.1 vs. NCBI_GenBank
Match: gi|573941173|ref|XP_006652981.1| (PREDICTED: ubiquitin carboxyl-terminal hydrolase 3-like isoform X1 [Oryza brachyantha]) HSP 1 Score: 91.6633 bits (226), Expect = 5.886e-18 Identity = 81/252 (32.14%), Postives = 115/252 (45.63%), Query Frame = 0
Query: 72 DRWPALESDAEVYTALLHTLLSPSSTPSDTRTPSCPFFFQDVFSLDDDYLGFVHGETLALILAYDD---RALNPSQESPPDPQLPIAPIFIKQLPVLDNACGTIALLHAIINTLPASTIPSSSLLAKFVSPIQAGETSFTSESLGIRLDAHEGIRAAHCEHAAQGQSEQVQGDAVRYHFICLIPNPLSPYPAVLELDGLKAHPIIHVGGSENGKKGETFLQMGAMVLKREFLAQFSNA-DETQINVLALVRE 319
+RWP LES +V+ L+ +L P D F DV+SLD D L V LA+I + D A NPSQ + FIKQ+ L NACGTIAL+HA+ N P ++ +S L F + TS + L+ + + AH A+ G ++ D V H+IC + + Y ELDG+K PI H S E+ LQ ++K A N + + NV+ L R+
Sbjct: 20 ERWPPLESSPDVFNQLMWSL----GVPEDVAE------FHDVYSLDADALEMVPRPVLAVIFCFPDPTQDASNPSQHVLVTGEKETL-FFIKQIESLGNACGTIALIHAVGNAYPEISLLKNSSLDTFAK----SSSGMTSYERAMFLEKDDDMARAHSVAASAGDTK--LSDDVEEHYICFVECDGTLY----ELDGMKPGPIKHGSSSP-----ESLLQDAVNIIK----ATMHNIPNSVKFNVMVLSRK 241 The following BLAST results are available for this feature:
BLAST of EWM24936.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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