EWM24936.1, cds5732 (CDS) Nannochloropsis gaditana

Overview
NameEWM24936.1
Unique Namecds5732
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:747996..748146 +
Alignment locationCM002466.1:748447..748975 +
Alignment locationCM002466.1:749234..749519 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24936.1
Productubiquitin carboxyl-terminal hydrolase family1
Orig transcript idgnl|cribi|Naga_100086g15.3836.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:747996..748146 +
CM002466.1supercontigCM002466.1:748447..748975 +
CM002466.1supercontigCM002466.1:749234..749519 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004843thiol-dependent ubiquitin-specific protease activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0006511ubiquitin-dependent protein catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: INTERPRO
TermDefinition
IPR001578Peptidase_C12_UCH
Homology
BLAST of EWM24936.1 vs. NCBI_GenBank
Match: gi|585106566|gb|EWM24936.1| (ubiquitin carboxyl-terminal hydrolase family1 [Nannochloropsis gaditana])

HSP 1 Score: 663.685 bits (1711), Expect = 0.000e+0
Identity = 321/321 (100.00%), Postives = 321/321 (100.00%), Query Frame = 0
Query:    1 MKGKSADLRQDEGIFPRTTKDWTLMQLIRRKSIAGCSVGRMAVGAAVWGQGDKMMTSNDTSGTSPPSMAKCDRWPALESDAEVYTALLHTLLSPSSTPSDTRTPSCPFFFQDVFSLDDDYLGFVHGETLALILAYDDRALNPSQESPPDPQLPIAPIFIKQLPVLDNACGTIALLHAIINTLPASTIPSSSLLAKFVSPIQAGETSFTSESLGIRLDAHEGIRAAHCEHAAQGQSEQVQGDAVRYHFICLIPNPLSPYPAVLELDGLKAHPIIHVGGSENGKKGETFLQMGAMVLKREFLAQFSNADETQINVLALVREDP 321
            MKGKSADLRQDEGIFPRTTKDWTLMQLIRRKSIAGCSVGRMAVGAAVWGQGDKMMTSNDTSGTSPPSMAKCDRWPALESDAEVYTALLHTLLSPSSTPSDTRTPSCPFFFQDVFSLDDDYLGFVHGETLALILAYDDRALNPSQESPPDPQLPIAPIFIKQLPVLDNACGTIALLHAIINTLPASTIPSSSLLAKFVSPIQAGETSFTSESLGIRLDAHEGIRAAHCEHAAQGQSEQVQGDAVRYHFICLIPNPLSPYPAVLELDGLKAHPIIHVGGSENGKKGETFLQMGAMVLKREFLAQFSNADETQINVLALVREDP
Sbjct:    1 MKGKSADLRQDEGIFPRTTKDWTLMQLIRRKSIAGCSVGRMAVGAAVWGQGDKMMTSNDTSGTSPPSMAKCDRWPALESDAEVYTALLHTLLSPSSTPSDTRTPSCPFFFQDVFSLDDDYLGFVHGETLALILAYDDRALNPSQESPPDPQLPIAPIFIKQLPVLDNACGTIALLHAIINTLPASTIPSSSLLAKFVSPIQAGETSFTSESLGIRLDAHEGIRAAHCEHAAQGQSEQVQGDAVRYHFICLIPNPLSPYPAVLELDGLKAHPIIHVGGSENGKKGETFLQMGAMVLKREFLAQFSNADETQINVLALVREDP 321          
BLAST of EWM24936.1 vs. NCBI_GenBank
Match: gi|1173953655|gb|OQS01183.1| (hypothetical protein ACHHYP_01713 [Achlya hypogyna])

HSP 1 Score: 103.99 bits (258), Expect = 7.928e-23
Identity = 68/207 (32.85%), Postives = 102/207 (49.28%), Query Frame = 0
Query:   68 MAKCDRWPALESDAEVYTALLHTLLSPSSTPSDTRTPSCPFFFQDVFSLDDDYLGFVHGETLALILAYDDRALNPSQESPPDPQLPIAPIFIKQLPVLDNACGTIALLHAIINTLPASTIPSSSLLAKFVSPIQAGETSFTSESLGIRLDAHEGIRAAHCEHAAQGQSEQV-QGDAVRYHFICLIPNPLSPYPAVLELDGLKAHPII 273
            M     WP LES+ +V+T+ L  L  PS            +F  +VF LD+D LGFV     A+I+ ++     P+   P    +     ++KQ P LD ACG IA +HA++N   A  I   S+L+KF     A     T E+  + L+     +  H  HA +GQ++Q   GD V++HFI  + N       ++ELDG+K   +I
Sbjct:    1 MTDAFNWPPLESNPDVFTSYLRDLGLPSD-----------WFVSEVFGLDEDCLGFVPRPVAAVIVTFESLKKTPTDGIP----VTTDGYYMKQTPKLDYACGVIACIHAVLNNTDAVQIHDGSILSKFA----AATKDQTPEARALMLETMREFQEVHKHHANEGQTDQASSGDDVKHHFIAFVKNSRG---QLIELDGMKKGALI 185          
BLAST of EWM24936.1 vs. NCBI_GenBank
Match: gi|813125895|ref|XP_012196855.1| (hypothetical protein SPRG_02878 [Saprolegnia parasitica CBS 223.65] >gi|641538570|gb|KDO32401.1| hypothetical protein SPRG_02878 [Saprolegnia parasitica CBS 223.65])

HSP 1 Score: 99.7525 bits (247), Expect = 3.667e-21
Identity = 65/202 (32.18%), Postives = 101/202 (50.00%), Query Frame = 0
Query:   73 RWPALESDAEVYTALLHTLLSPSSTPSDTRTPSCPFFFQDVFSLDDDYLGFVHGETLALILAYDDRALNPSQESPPDPQLPIAPIFIKQLPVLDNACGTIALLHAIINTLPASTIPSSSLLAKFVSPIQAGETSFTSESLGIRLDAHEGIRAAHCEHAAQGQSEQ-VQGDAVRYHFICLIPNPLSPYPAVLELDGLKAHPII 273
             WP LES+ EV+T  L  L  P             +F  +VF LD+D LGFV     A+I+ ++  +L   +   P+    +   ++KQ P LD ACG IA +HA++N L    +  +S+LAKF    +A     T     + L+     +  H  HA +GQ++Q   GD V++HFI  + N       ++ELDG+K   ++
Sbjct:    8 NWPPLESNPEVFTKYLLELGLPGD-----------WFVSEVFGLDEDCLGFVPRPVAAVIVTFE--SLKKLETDAPEA---VTDYYMKQTPKLDYACGVIACIHAVLNNLDKVQLVENSILAKFYDATKAQ----TPADRALTLETMREFQDVHKAHANEGQTDQAANGDDVKHHFIAFVRNSRGQ---LVELDGMKKSALV 186          
BLAST of EWM24936.1 vs. NCBI_GenBank
Match: gi|678312597|emb|CDW88284.1| (ubiquitin carboxyl-terminal hydrolase isozyme l3 [Stylonychia lemnae])

HSP 1 Score: 98.9821 bits (245), Expect = 6.419e-21
Identity = 65/209 (31.10%), Postives = 105/209 (50.24%), Query Frame = 0
Query:   73 RWPALESDAEVYTALLHTLLSPSSTPSDTRTPSCPFFFQDVFSLDDDYLGFVHGETLALILAYDDRALNPSQESPPDPQLPIAPIFIKQLPVLDNACGTIALLHAIINTLPASTIPSSSLLAKFVSPIQAGETSFTSESLGIRLDAHEGIRAAHCEHAAQGQSE-QVQGDAVRYHFICLIPNPLSPYPAVLELDGLKAHPIIHVGGSEN 280
             WP LES+ EV+T  +H +  P             +   +VF LD+D L FV    +A+I  +++  L   +E+  +        ++KQ   LDNACG IA +H+ +N L   T+   S+L KF + ++      T E     L+ +   +  H ++AAQGQS      D VR+HFI  +   L+    ++ELDG+K+ P++    SE+
Sbjct:    8 NWPPLESNPEVFTDYMHKIGLPED-----------WVVGEVFGLDEDCLSFVPKPVVAVIATFEN--LKKGEEAKSEHTHAETNYYMKQTHSLDNACGIIACIHSALNNLDKFTLAEGSVLQKFHTAVK----DLTPEERATSLEGNSEFQETHKQYAAQGQSNLAATQDDVRHHFIAFV---LNSKGQLVELDGVKSGPLVIKDHSED 196          
BLAST of EWM24936.1 vs. NCBI_GenBank
Match: gi|669137676|ref|XP_008604406.1| (hypothetical protein SDRG_00696 [Saprolegnia diclina VS20] >gi|530743595|gb|EQC41837.1| hypothetical protein SDRG_00696 [Saprolegnia diclina VS20])

HSP 1 Score: 98.5969 bits (244), Expect = 9.142e-21
Identity = 66/202 (32.67%), Postives = 101/202 (50.00%), Query Frame = 0
Query:   73 RWPALESDAEVYTALLHTLLSPSSTPSDTRTPSCPFFFQDVFSLDDDYLGFVHGETLALILAYDDRALNPSQESPPDPQLPIAPIFIKQLPVLDNACGTIALLHAIINTLPASTIPSSSLLAKFVSPIQAGETSFTSESLGIRLDAHEGIRAAHCEHAAQGQSEQ-VQGDAVRYHFICLIPNPLSPYPAVLELDGLKAHPII 273
             WP LES+ EV+T  L  L      P D       +F  +VF LD+D LGFV     A+I+ ++  +L   +   P+    +   ++KQ P LD ACG IA +HA++N L    +   S+LAKF    +A     T     + L+     +  H  HA +GQ++Q   GD V++HFI  + N       ++ELDG+K   ++
Sbjct:    6 NWPPLESNPEVFTKYLLAL----GLPGD-------WFVSEVFGLDEDCLGFVPRPVAAVIVTFE--SLKKLETDAPEA---VTDYYMKQTPKLDYACGVIACIHAVLNNLDKLQLVEHSILAKFYDATKAQ----TPADRALTLETMREFQEVHKAHANEGQTDQAANGDDVKHHFIAFVRNSRGQ---LVELDGMKKSALV 184          
BLAST of EWM24936.1 vs. NCBI_GenBank
Match: gi|698785651|ref|XP_009825869.1| (hypothetical protein H257_03463 [Aphanomyces astaci] >gi|574118697|gb|ETV84177.1| hypothetical protein H257_03463 [Aphanomyces astaci])

HSP 1 Score: 96.6709 bits (239), Expect = 5.687e-20
Identity = 67/201 (33.33%), Postives = 108/201 (53.73%), Query Frame = 0
Query:   74 WPALESDAEVYTALLHTLLSPSSTPSDTRTPSCPFFFQDVFSLDDDYLGFVHGETLALILAYDDRALNPSQESPPDPQLPIAPIFIKQLPVLDNACGTIALLHAIINTLPASTIPSSSLLAKFVSPIQAGETSFTSESLGIRLDAHEGIRAAHCEHAAQGQSEQ-VQGDAVRYHFICLIPNPLSPYPAVLELDGLKAHPII 273
            WP LES+ EV+T  L+ L      PSD       +F  +VF LDDD LGFV    +A+I+ ++  +L    ++    +   A  F+KQ P LD ACG IA +H+++N+L + T+  +S+L K+    +A +T   ++     L+     +  H  +A+ GQS      D V++HF+  + N L     ++ELDGLK  P++
Sbjct:   23 WPPLESNPEVFTEYLYQL----GLPSD-------WFVGEVFGLDDDSLGFVPRPVVAVIVTFE--SLKKETDAVAAAK---ADFFMKQSPKLDYACGVIACIHSVLNSLDSITLVENSILEKY---YRATKTQSPADR-ATTLENMTEFQEVHTSYASLGQSSVPTAEDDVKHHFVTFVQNALG---QLIELDGLKKGPVV 200          
BLAST of EWM24936.1 vs. NCBI_GenBank
Match: gi|403342795|gb|EJY70721.1| (ubiquitin carboxyl-terminal hydrolase isozyme L3 (macronuclear) [Oxytricha trifallax])

HSP 1 Score: 95.9005 bits (237), Expect = 1.006e-19
Identity = 65/202 (32.18%), Postives = 101/202 (50.00%), Query Frame = 0
Query:   73 RWPALESDAEVYTALLHTLLSPSSTPSDTRTPSCPFFFQDVFSLDDDYLGFVHGETLALILAYDDRALNPSQESPPDPQLPIAPIFIKQLPVLDNACGTIALLHAIINTLPASTIPSSSLLAKFVSPIQAGETSFTSESLGIRLDAHEGIRAAHCEHAAQGQSEQVQG-DAVRYHFICLIPNPLSPYPAVLELDGLKAHPII 273
             WP LES+ +V+T  LH L  P++           +   +VF LD++ L FV    +A+I  +++  L   +ES           ++KQ  VLDNACG IA +H+++N L    +   S+L +F   + A     + E     L+ +   +  H  +AAQGQS      D V++HFI  I N       ++ELDG+K+ PII
Sbjct:    9 NWPPLESNPDVFTDYLHNLGVPAN-----------WVVGEVFGLDEECLQFVPQPVVAVIATFEN--LKKGEESKEPTAHADVSYYMKQTHVLDNACGVIACIHSVLNNLDKIELGKGSVLERFHQSVSAQ----SPEERAKSLETNAEFQETHKTYAAQGQSNLASNQDDVKHHFIAFIVNAKG---QLVELDGIKSGPII 190          
BLAST of EWM24936.1 vs. NCBI_GenBank
Match: gi|673019220|ref|XP_008863571.1| (hypothetical protein H310_01987 [Aphanomyces invadans] >gi|574480485|gb|ETW07478.1| hypothetical protein H310_01987 [Aphanomyces invadans])

HSP 1 Score: 91.6633 bits (226), Expect = 3.236e-18
Identity = 64/201 (31.84%), Postives = 103/201 (51.24%), Query Frame = 0
Query:   74 WPALESDAEVYTALLHTLLSPSSTPSDTRTPSCPFFFQDVFSLDDDYLGFVHGETLALILAYDDRALNPSQESPPDPQLPIAPIFIKQLPVLDNACGTIALLHAIINTLPASTIPSSSLLAKFVSPIQAGETSFTSESLGIRLDAHEGIRAAHCEHAAQGQSEQVQGDA-VRYHFICLIPNPLSPYPAVLELDGLKAHPII 273
            WP LES+ EV+T  L+ L      PSD       +F  ++F LDDD  GFV    +A+I+ ++       +++   P +  A  F+KQ P LD ACG IA +H+++N L + T+  +S+L K+    +    +  + +L    +  E     H  +A+ GQS     +  V++HF+  + N       +LELDGLK  PI+
Sbjct:   11 WPPLESNPEVFTEYLYQL----GLPSD-------WFVGEMFGLDDDSHGFVPRPVVAVIVTFESL----KKDTAETPAVAKADFFMKQSPKLDYACGVIACIHSVLNNLGSITLVENSILEKYHRTTKTQSPADRATTLENMTEFQE----VHTSYASLGQSTVPSTEEDVKHHFVTFVQNAQG---QLLELDGLKKGPIV 189          
BLAST of EWM24936.1 vs. NCBI_GenBank
Match: gi|923138967|ref|XP_013762948.1| (ubiquitin carboxyl-terminal esterase L3 [Thecamonas trahens ATCC 50062] >gi|906552724|gb|KNC45967.1| ubiquitin carboxyl-terminal esterase L3 [Thecamonas trahens ATCC 50062])

HSP 1 Score: 91.6633 bits (226), Expect = 4.186e-18
Identity = 81/255 (31.76%), Postives = 117/255 (45.88%), Query Frame = 0
Query:   72 DRWPALESDAEVYTALLHTLLSPSSTPSDTRTPSCPFFFQDVFSLDDDYLGFVHGETLALILAYD---DRALNPSQES-------PPDPQLPIAPIFIKQLPVLDNACGTIALLHAIINTLPASTIPSSSLLAKFVSPIQAGETSFTSESLGIRLDAHEGIRAAHCEHAAQGQSEQVQGDA-VRYHFICLIPNPLSPYPAVLELDGLKAHPIIHVGGSENGKKGETFLQMGAMVLKREFLAQFSNADETQINVLA 315
            DRW A+ES+ EV+T     L  P           C   F D++ LDDD L F+    +A++L      ++   P  ES       P DP     P ++ Q+  L NACGTIA++HA+ NT+ A  +   S+L  F+  +         E+      A+E IR+ H   A+QGQS Q + +A +  HFIC   +    Y    ELDG K  PI     S +G          A  +K  F+A   N DE   +++A
Sbjct:   11 DRWKAVESNPEVFTNFAANLGVPEG--------KC--MFSDIWGLDDDMLAFLPQPVMAVLLCRPSGLNKVDRPDPESVYGDDGAPADP-----PFYMTQIDELGNACGTIAMVHALANTVSALDLADDSILRGFLDSVAEATPLVRGETFA----ANERIRSLHNGTASQGQSAQPESEASIAAHFICFAFHDGILY----ELDGRKPGPIPLARCSADG-----VAAAAAAAIKTYFMA--PNPDEYNFSMVA 235          
BLAST of EWM24936.1 vs. NCBI_GenBank
Match: gi|573941173|ref|XP_006652981.1| (PREDICTED: ubiquitin carboxyl-terminal hydrolase 3-like isoform X1 [Oryza brachyantha])

HSP 1 Score: 91.6633 bits (226), Expect = 5.886e-18
Identity = 81/252 (32.14%), Postives = 115/252 (45.63%), Query Frame = 0
Query:   72 DRWPALESDAEVYTALLHTLLSPSSTPSDTRTPSCPFFFQDVFSLDDDYLGFVHGETLALILAYDD---RALNPSQESPPDPQLPIAPIFIKQLPVLDNACGTIALLHAIINTLPASTIPSSSLLAKFVSPIQAGETSFTSESLGIRLDAHEGIRAAHCEHAAQGQSEQVQGDAVRYHFICLIPNPLSPYPAVLELDGLKAHPIIHVGGSENGKKGETFLQMGAMVLKREFLAQFSNA-DETQINVLALVRE 319
            +RWP LES  +V+  L+ +L      P D         F DV+SLD D L  V    LA+I  + D    A NPSQ      +      FIKQ+  L NACGTIAL+HA+ N  P  ++  +S L  F        +  TS    + L+  + +  AH   A+ G ++    D V  H+IC +    + Y    ELDG+K  PI H   S      E+ LQ    ++K    A   N  +  + NV+ L R+
Sbjct:   20 ERWPPLESSPDVFNQLMWSL----GVPEDVAE------FHDVYSLDADALEMVPRPVLAVIFCFPDPTQDASNPSQHVLVTGEKETL-FFIKQIESLGNACGTIALIHAVGNAYPEISLLKNSSLDTFAK----SSSGMTSYERAMFLEKDDDMARAHSVAASAGDTK--LSDDVEEHYICFVECDGTLY----ELDGMKPGPIKHGSSSP-----ESLLQDAVNIIK----ATMHNIPNSVKFNVMVLSRK 241          
The following BLAST results are available for this feature:
BLAST of EWM24936.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106566|gb|EWM24936.1|0.000e+0100.00ubiquitin carboxyl-terminal hydrolase family1 [Nan... [more]
gi|1173953655|gb|OQS01183.1|7.928e-2332.85hypothetical protein ACHHYP_01713 [Achlya hypogyna... [more]
gi|813125895|ref|XP_012196855.1|3.667e-2132.18hypothetical protein SPRG_02878 [Saprolegnia paras... [more]
gi|678312597|emb|CDW88284.1|6.419e-2131.10ubiquitin carboxyl-terminal hydrolase isozyme l3 [... [more]
gi|669137676|ref|XP_008604406.1|9.142e-2132.67hypothetical protein SDRG_00696 [Saprolegnia dicli... [more]
gi|698785651|ref|XP_009825869.1|5.687e-2033.33hypothetical protein H257_03463 [Aphanomyces astac... [more]
gi|403342795|gb|EJY70721.1|1.006e-1932.18ubiquitin carboxyl-terminal hydrolase isozyme L3 (... [more]
gi|673019220|ref|XP_008863571.1|3.236e-1831.84hypothetical protein H310_01987 [Aphanomyces invad... [more]
gi|923138967|ref|XP_013762948.1|4.186e-1831.76ubiquitin carboxyl-terminal esterase L3 [Thecamona... [more]
gi|573941173|ref|XP_006652981.1|5.886e-1832.14PREDICTED: ubiquitin carboxyl-terminal hydrolase 3... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5747rna5747Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications