rna5746, rna5746 (mRNA) Nannochloropsis gaditana

Overview
Namerna5746
Unique Namerna5746
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2881
Alignment locationCM002466.1:746680..748402 -

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Properties
Property NameValue
Productpentapeptide repeat protein
Orig transcript idgnl|cribi|Naga_100086g16.3850.mrna
Orig protein idgnl|cribi|Naga_100086g16.3850
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:746680..748402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100086g16gene5551Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5746rna5746-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24950.1cds5731Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5746 ID=rna5746|Name=rna5746|organism=Nannochloropsis gaditana|type=mRNA|length=2881bp
AACTGTCTTTCACAGCGACAAGAAGAAAGGAAATAGCGGGCAAATCCGCC
ACATACACGCTGTCGTCTGATGGATAATCATCCTTTTGCATGCATGTGGG
CGGTGAAATGGGTCGCATGGCAGGTTGGGACACTCGAGTTTCGAAAAAAT
CATGCAGATATCAACGAGAAAGCTACGATTGAGCAACATCTGCAACAACT
CAGACTAACTGCAGCCCCGTAACTCCAACGCATTATGGCATGCATCAACG
CACAGATCCGCCCCTGTCAAAGATTGTGAAACGTATCGTTTGTTGGCGGC
AGCGGGGGGTCAAGGGAGGGTTGTGAGAAAAGGGGATGAACGGTGGTGGG
GGCAAATACGTGGAAGGGGAAGAGGCGATGGTGGAAGCCTCCTTGAGGAC
CATGTCACTGAAGAATGCCGCAGTACCTGCAACGGATCAGATGCATGTCC
TACTGGGAGACAACTTGGAGAAAAAAAGGAAGAAAAAAAAGCGGAAAAAA
AAAGCAAGACAGCTGCCGCGACGGGACCCCAGGAGAACGCCACGATCGAG
AACCACAGCCCAACAGGTACACGAAGAAGCAATGATGCCATTGCGGCAAC
CGTCTCGGTAAAGATGGGCACATTGACGACGAAAGAGTCTCCTAAAGCGA
TAGAAAACGGTGCCCATTCCATGTCAAGCTCGCCCTTTCCAACGTCCCCG
CCGCCCTCCTCAAGCGAATCAGACTCTGACGAAGGGAAGCCATCAAACCC
AGAGGCGTCGCACTGGTCCGTGGTCGCAGGCACGTCAGGAGACGGCACGG
CTCATCCGACGTCCCGTCTGCCATCGGGCCTTGCGTCCTCCATCCCTAGC
TCCCTGCATCCACCACCCTCCAGGACACCGTCGTCCGCCCTCCCCCCCAC
AGCACAAGCTCCGCCCGGCCCCCACCCAGTTATGACCGAGGAAAACCTCC
TTGACTTACTGTCGGGTAAAACGCTGCCCCCTGCCATCTCGTCCTCCATC
CCCAGACCGCACCGGGGTCTGGTCAACGCCGGGAACACCTGCTTCCAGAA
TCTGGTCCTACAGGCCCTTCTCGCCAGCGAACCCCTCCATCGCCTCCTCC
TCGTCCTCCGACCACTCGTCCTCGCGTCTTCTTCGCCGGCCTCCCGCTCC
CTTTCCCTCCTGGCCCGGCGCTGCCAAGCACTCGTGCCGACGTGGATGGA
TATGGCGAAGGTCGCCGTCGCCCTTGAGGATCCCTCTCTTGTCGCGGCCT
CCACTGCCTCTCCCGCGCTCGTCATGTACAAAAAGAAAGACAGCGCCGTC
GCTGGGAGGAAGTCCGGCAAGAAGCACCTCGTCGGCACCGGCTCCTCCTC
CTCCTCCTCATTTCCCCCACTTCCTTCTCACCCCAGCGGCGTGGCCAACG
GGTTCAAGCTCCGTGGCCCGCTAGAGGCACGGTCGCCTTCACCCCGTGAT
TTCTACCTGGCACCCTTGCGGCCGGACGACTATTTGGAGGAGGCTTTCCG
GGCCTTCCGATCGTCAGAGGCCGGGGAACAGGAAGATGCTCAGGAGTTCT
TGGCCTTCCTCTTGGACCGGCTGCACGAAGAAGCCGTGGGGGCGGGGGCG
GGGGGGGGGAAGGGAAAGGGGCGAAGGAGGAGGAGGAGGGGGAAGGGGGT
TGGCAGGAAGTCGGGGAGAAAGGCCGCGTCGCCAAGCTCTCTGTGAGCGG
GGTCAAGCGGACCGAGAAGGGGACCACGGACGTATCGGCGATTTCCCGCC
TCTTCTATGGGCGGGAGCGCTCGGACATAAGGAGGGCGACGAGTCGGAGC
ATTTCGGCGACGATGACAAGGTTCAATTGTCTTCAGCTGGACTTGCCGCC
CCTGGGTGGCGGGGGGAAGAAGGAAGTGGCATTAGAGGAGGTAATCGAGC
ATTCCTTCCGGGAGGAGGTGATCGAAAGCAGCGACGGAACATTCCTTCGG
AAAAAGCTCTGCCTGGATGCGCTCCCTCCCGTCCTCATTCTCCACCTCAA
GCGCTTCATTTTTGATCTCCATCAAGGGGTGGGCGTCAAGCTGCACCACA
GAGTCCACTATCCGTCCTGCCTCAGGCTGCCTTCTCAGATGCTCTCAGTA
AGTCTGCGGACGACGGCCGGGATCGAGGGGGGGAAAGGCGAGGGAAAGGG
CCCTGCATACGAGCTGTTTGCGGTGGGGCTGCACTATGGTCGTTCCTTGA
ACGGTGGCCACTACACGGTGTTTTGCAAGGAGGGGGGGGGTGGAAAGGAA
TGGGTGGGATACGACGACGAGCGCGTCGATCGGGTTCAAGAATGGGAGGT
AAAGAGTTATACAGAGCAAGTCTACCTCCTTTTCTATGAACGGGTGTAGG
TTGGGGAGAGAGAGGGGTCGGTGGGAAGGGAAAGACGGGGCTGTACAGCG
GTCAGGCACGGATGGTGGAAAATCGTTCAAATGAAGTAAGCTACCGGCGA
CTACCCCTTGCTTGGCTCGTTTTTAGGAAAATTCTAGTCGTTCGCGTTCT
GCCTCCTGCGTACATTTTGCCCATCTTTTAAAATTTTAAAGGGGGTCATG
CAGACGGTGGAAGCTTAGCCACGCAGGCTTTCCGCTCCGTGTAACCAATG
GTCAGGACTAGGCAATGCATGGGCAGAGATTGTGCCACGGCTCAAGCTCG
TGCTGGCGAGTTGATCGGGGCAGCATCCAAAATAGAGCTTGATTCCGGCG
ACAGTGGTGGGAATCGAGATTGTGTCAGGAATAAGGATAGCATTCGGACT
GTGCGACAGCTACGACTAGAGCGGGATGGTAGACTACACGCAAGGGCAGA
GGCCTCGTGGGACAGGCGGACCCTGGCAATTGAAGCTACGTACCCCTGTG
GAAATTAAGCGTAAAAACCGTCTTACAAAGT
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protein sequence of rna5746

>rna5746-protein ID=rna5746-protein|Name=rna5746|organism=Nannochloropsis gaditana|type=polypeptide|length=217bp
MRPTLQPAMLFLLISCISVQSFVVRGKMPSSCRRTTVAISSASSSLPSSN
PIIISIRRLLSFAPILLLGPFLDVPTAHAISGGGKDYAEAKIADQDFSGK
DFSKKDFSGAFAQRANFKGAKLMGARFYKSALTEADFTGADLTSASFEGA
NMVDAILKDAIVNNAYFTETVLKVGSIEGADFSDTLLDRFVQKKLCEKAT
GTNPKTKVDTRESLLCD
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mRNA from alignment at CM002466.1:746680..748402-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5746 ID=rna5746|Name=rna5746|organism=Nannochloropsis gaditana|type=mRNA|length=1723bp|location=Sequence derived from alignment at CM002466.1:746680..748402- (Nannochloropsis gaditana)
TGCTTCGCGAGTCACGAAGAACGACGCTAGATTGAAAACGAGAAAAGCGA TAGCGCAACTGGTGTTTTTTTCCCCACGAGCAACTCAGTATAACTCCATG GATACAGCATCGATTGACGTTTATCTGACCTTTCAATATTTTTGTTGCCT TCTTTAGAGGCCTCACTTCCAACTCCGCTCTATCTAACCTCCTGCCTGTC GAACCCCGTGGACAATGAATCATTCCTTTCAATGACTTGAAGCTATTGCT TCTTACCTTGTCCCCATACAGCAGCACCCACAGCCATGCGTCCGACACTG CAACCTGCTATGCTTTTTCTCCTGATCAGTTGCATTAGCGTCCAATCTTT TGTTGTACGGGGAAAGATGCCTTCGTCTTGCCGCAGGTCAGCTGATTTTC CCTTCATGTCCGTGACGTCTTTCTTAGTGCCCTGAAAGTATCCATAGGGA CACACATCTTATCTGATTTCGAATAAAAAATACTAAGGACAACGGTGGCA ATTTCTTCAGCATCGTCATCCTTGCCATCCTCAAATCCCATCATCATCTC CATCCGCCGGCTTCTGAGTTTTGCTCCGATTCTTCTCCTCGGTCCGTTTT TGGATGTACCCACTGCACACGCCATTTCCGGTGGAGGAAAAGATTACGCA GAGGCCAAAATTGCAGATCAAGACTTCAGTGGAAAAGACTTCAGTAAAAA AGACTTTTCGGGGGCTTTTGCGGTGGGTCATGGTTTTGGCGGGGTACGGG GGAGGGATTTTTGATGGGGTAGTGAGTCCCTATTGAAGGCAGGAGTGTGA ATCAAGCAATTTATCAAGCCATTTATCAAGCAATTTATATTTCTGTATTT AATAAATTCAAATTACGTGCATGCAGCAACGCGCCAATTTCAAGGGAGCA AAGCTTATGGGTGCGCGTTTTTACAAGTCGGCCTTGACTGAGGCTGATTT TACCGGTAGGTTTCCTTGAGAAAGAGCAGCGAGCCACACAGAGATGCAAA ACATCAAAAACATAAATGTAACATATCCAAGGGCATGACATTATCTATCA GCAAATTTATCGCTTGCTTTCACCGCATTTCCCCGCAGGAGCCGACCTAA CCAGCGCCTCCTTCGAGGGAGCGAATATGGTCGACGCTATTCTCAAGGAC GCGATCGTCAACAACGCCTACTTCACGGAAACAGTCCTGAAAGTTGGTTC CATTGAGGGTGCGGATTTCTCCGACACGTTGCTCGACCGTTTCGTTCAAA AAAAGCTCTGCGAGAAGGCGACAGGTACGCAGAGTGTTGGAGCCACGGTT GGCATGGGTGCCGGAGTGTGTGGAGAATGTCTTGGACTCTTGGAGGGGCG GAAATTTTGAGGCCTCGATGAACAAGCTCAAACTCGGACAATTGTTTTCC TGCAGGCACGAATCCCAAGACCAAGGTAGACACCCGCGAGTCACTGTTGT GCGACTAAGGCTTCAGATAAGCTAGGCAAAGCAGTGCCCCGAGGTGAAAA CTCTCTTTTTTTTTGAAAAAAAAGCTAAAAAAGAATGGGTTTTGATGAAA GAGGGAGGAAAGAGGTAGATTATGTGCGAGCCTTGCCGTGGAGAGGATCG TCATTACCATAAGGGCTCTTCCGCCGGTGCGCCATCCTCGCAGGGCCTTT TAAAAGGTCATGGCAAAGTGACCACCTCCATCAACTAGCAACAAAGGAAA AATATAAGAGATGCGGTTAGTCG
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Coding sequence (CDS) from alignment at CM002466.1:746680..748402-

>rna5746 ID=rna5746|Name=rna5746|organism=Nannochloropsis gaditana|type=CDS|length=3270bp|location=Sequence derived from alignment at CM002466.1:746680..748402- (Nannochloropsis gaditana)
GCACGAATCCCAAGACCAAGGTAGACACCCGCGAGTCACTGTTGTGCGAC
TAAGAGCCGACCTAACCAGCGCCTCCTTCGAGGGAGCGAATATGGTCGAC
GCTATTCTCAAGGACGCGATCGTCAACAACGCCTACTTCACGGAAACAGT
CCTGAAAGTTGGTTCCATTGAGGGTGCGGATTTCTCCGACACGTTGCTCG
ACCGTTTCGTTCAAAAAAAGCTCTGCGAGAAGGCGACAGCAACGCGCCAA
TTTCAAGGGAGCAAAGCTTATGGGTGCGCGTTTTTACAAGTCGGCCTTGA
CTGAGGCTGATTTTACCGGACAACGGTGGCAATTTCTTCAGCATCGTCAT
CCTTGCCATCCTCAAATCCCATCATCATCTCCATCCGCCGGCTTCTGAGT
TTTGCTCCGATTCTTCTCCTCGGTCCGTTTTTGGATGTACCCACTGCACA
CGCCATTTCCGGTGGAGGAAAAGATTACGCAGAGGCCAAAATTGCAGATC
AAGACTTCAGTGGAAAAGACTTCAGTAAAAAAGACTTTTCGGGGGCTTTT
GCGATGCGTCCGACACTGCAACCTGCTATGCTTTTTCTCCTGATCAGTTG
CATTAGCGTCCAATCTTTTGTTGTACGGGGAAAGATGCCTTCGTCTTGCC
GCAGGCACGAATCCCAAGACCAAGGTAGACACCCGCGAGTCACTGTTGTG
CGACTAAGAGCCGACCTAACCAGCGCCTCCTTCGAGGGAGCGAATATGGT
CGACGCTATTCTCAAGGACGCGATCGTCAACAACGCCTACTTCACGGAAA
CAGTCCTGAAAGTTGGTTCCATTGAGGGTGCGGATTTCTCCGACACGTTG
CTCGACCGTTTCGTTCAAAAAAAGCTCTGCGAGAAGGCGACAGCAACGCG
CCAATTTCAAGGGAGCAAAGCTTATGGGTGCGCGTTTTTACAAGTCGGCC
TTGACTGAGGCTGATTTTACCGGACAACGGTGGCAATTTCTTCAGCATCG
TCATCCTTGCCATCCTCAAATCCCATCATCATCTCCATCCGCCGGCTTCT
GAGTTTTGCTCCGATTCTTCTCCTCGGTCCGTTTTTGGATGTACCCACTG
CACACGCCATTTCCGGTGGAGGAAAAGATTACGCAGAGGCCAAAATTGCA
GATCAAGACTTCAGTGGAAAAGACTTCAGTAAAAAAGACTTTTCGGGGGC
TTTTGCGATGCGTCCGACACTGCAACCTGCTATGCTTTTTCTCCTGATCA
GTTGCATTAGCGTCCAATCTTTTGTTGTACGGGGAAAGATGCCTTCGTCT
TGCCGCAGGCACGAATCCCAAGACCAAGGTAGACACCCGCGAGTCACTGT
TGTGCGACTAAGAGCCGACCTAACCAGCGCCTCCTTCGAGGGAGCGAATA
TGGTCGACGCTATTCTCAAGGACGCGATCGTCAACAACGCCTACTTCACG
GAAACAGTCCTGAAAGTTGGTTCCATTGAGGGTGCGGATTTCTCCGACAC
GTTGCTCGACCGTTTCGTTCAAAAAAAGCTCTGCGAGAAGGCGACAGCAA
CGCGCCAATTTCAAGGGAGCAAAGCTTATGGGTGCGCGTTTTTACAAGTC
GGCCTTGACTGAGGCTGATTTTACCGGACAACGGTGGCAATTTCTTCAGC
ATCGTCATCCTTGCCATCCTCAAATCCCATCATCATCTCCATCCGCCGGC
TTCTGAGTTTTGCTCCGATTCTTCTCCTCGGTCCGTTTTTGGATGTACCC
ACTGCACACGCCATTTCCGGTGGAGGAAAAGATTACGCAGAGGCCAAAAT
TGCAGATCAAGACTTCAGTGGAAAAGACTTCAGTAAAAAAGACTTTTCGG
GGGCTTTTGCGATGCGTCCGACACTGCAACCTGCTATGCTTTTTCTCCTG
ATCAGTTGCATTAGCGTCCAATCTTTTGTTGTACGGGGAAAGATGCCTTC
GTCTTGCCGCAGGCACGAATCCCAAGACCAAGGTAGACACCCGCGAGTCA
CTGTTGTGCGACTAAGAGCCGACCTAACCAGCGCCTCCTTCGAGGGAGCG
AATATGGTCGACGCTATTCTCAAGGACGCGATCGTCAACAACGCCTACTT
CACGGAAACAGTCCTGAAAGTTGGTTCCATTGAGGGTGCGGATTTCTCCG
ACACGTTGCTCGACCGTTTCGTTCAAAAAAAGCTCTGCGAGAAGGCGACA
GCAACGCGCCAATTTCAAGGGAGCAAAGCTTATGGGTGCGCGTTTTTACA
AGTCGGCCTTGACTGAGGCTGATTTTACCGGACAACGGTGGCAATTTCTT
CAGCATCGTCATCCTTGCCATCCTCAAATCCCATCATCATCTCCATCCGC
CGGCTTCTGAGTTTTGCTCCGATTCTTCTCCTCGGTCCGTTTTTGGATGT
ACCCACTGCACACGCCATTTCCGGTGGAGGAAAAGATTACGCAGAGGCCA
AAATTGCAGATCAAGACTTCAGTGGAAAAGACTTCAGTAAAAAAGACTTT
TCGGGGGCTTTTGCGATGCGTCCGACACTGCAACCTGCTATGCTTTTTCT
CCTGATCAGTTGCATTAGCGTCCAATCTTTTGTTGTACGGGGAAAGATGC
CTTCGTCTTGCCGCAGGCACGAATCCCAAGACCAAGGTAGACACCCGCGA
GTCACTGTTGTGCGACTAAGAGCCGACCTAACCAGCGCCTCCTTCGAGGG
AGCGAATATGGTCGACGCTATTCTCAAGGACGCGATCGTCAACAACGCCT
ACTTCACGGAAACAGTCCTGAAAGTTGGTTCCATTGAGGGTGCGGATTTC
TCCGACACGTTGCTCGACCGTTTCGTTCAAAAAAAGCTCTGCGAGAAGGC
GACAGCAACGCGCCAATTTCAAGGGAGCAAAGCTTATGGGTGCGCGTTTT
TACAAGTCGGCCTTGACTGAGGCTGATTTTACCGGACAACGGTGGCAATT
TCTTCAGCATCGTCATCCTTGCCATCCTCAAATCCCATCATCATCTCCAT
CCGCCGGCTTCTGAGTTTTGCTCCGATTCTTCTCCTCGGTCCGTTTTTGG
ATGTACCCACTGCACACGCCATTTCCGGTGGAGGAAAAGATTACGCAGAG
GCCAAAATTGCAGATCAAGACTTCAGTGGAAAAGACTTCAGTAAAAAAGA
CTTTTCGGGGGCTTTTGCGATGCGTCCGACACTGCAACCTGCTATGCTTT
TTCTCCTGATCAGTTGCATTAGCGTCCAATCTTTTGTTGTACGGGGAAAG
ATGCCTTCGTCTTGCCGCAG
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Synonyms
Publications