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Properties
| Property Name | Value |
|---|
| Product | pentapeptide repeat protein |
| Orig transcript id | gnl|cribi|Naga_100086g16.3850.mrna |
| Orig protein id | gnl|cribi|Naga_100086g16.3850 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:746680..748402 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5746 ID=rna5746|Name=rna5746|organism=Nannochloropsis gaditana|type=mRNA|length=2881bp
AACTGTCTTTCACAGCGACAAGAAGAAAGGAAATAGCGGGCAAATCCGCC
ACATACACGCTGTCGTCTGATGGATAATCATCCTTTTGCATGCATGTGGG
CGGTGAAATGGGTCGCATGGCAGGTTGGGACACTCGAGTTTCGAAAAAAT
CATGCAGATATCAACGAGAAAGCTACGATTGAGCAACATCTGCAACAACT
CAGACTAACTGCAGCCCCGTAACTCCAACGCATTATGGCATGCATCAACG
CACAGATCCGCCCCTGTCAAAGATTGTGAAACGTATCGTTTGTTGGCGGC
AGCGGGGGGTCAAGGGAGGGTTGTGAGAAAAGGGGATGAACGGTGGTGGG
GGCAAATACGTGGAAGGGGAAGAGGCGATGGTGGAAGCCTCCTTGAGGAC
CATGTCACTGAAGAATGCCGCAGTACCTGCAACGGATCAGATGCATGTCC
TACTGGGAGACAACTTGGAGAAAAAAAGGAAGAAAAAAAAGCGGAAAAAA
AAAGCAAGACAGCTGCCGCGACGGGACCCCAGGAGAACGCCACGATCGAG
AACCACAGCCCAACAGGTACACGAAGAAGCAATGATGCCATTGCGGCAAC
CGTCTCGGTAAAGATGGGCACATTGACGACGAAAGAGTCTCCTAAAGCGA
TAGAAAACGGTGCCCATTCCATGTCAAGCTCGCCCTTTCCAACGTCCCCG
CCGCCCTCCTCAAGCGAATCAGACTCTGACGAAGGGAAGCCATCAAACCC
AGAGGCGTCGCACTGGTCCGTGGTCGCAGGCACGTCAGGAGACGGCACGG
CTCATCCGACGTCCCGTCTGCCATCGGGCCTTGCGTCCTCCATCCCTAGC
TCCCTGCATCCACCACCCTCCAGGACACCGTCGTCCGCCCTCCCCCCCAC
AGCACAAGCTCCGCCCGGCCCCCACCCAGTTATGACCGAGGAAAACCTCC
TTGACTTACTGTCGGGTAAAACGCTGCCCCCTGCCATCTCGTCCTCCATC
CCCAGACCGCACCGGGGTCTGGTCAACGCCGGGAACACCTGCTTCCAGAA
TCTGGTCCTACAGGCCCTTCTCGCCAGCGAACCCCTCCATCGCCTCCTCC
TCGTCCTCCGACCACTCGTCCTCGCGTCTTCTTCGCCGGCCTCCCGCTCC
CTTTCCCTCCTGGCCCGGCGCTGCCAAGCACTCGTGCCGACGTGGATGGA
TATGGCGAAGGTCGCCGTCGCCCTTGAGGATCCCTCTCTTGTCGCGGCCT
CCACTGCCTCTCCCGCGCTCGTCATGTACAAAAAGAAAGACAGCGCCGTC
GCTGGGAGGAAGTCCGGCAAGAAGCACCTCGTCGGCACCGGCTCCTCCTC
CTCCTCCTCATTTCCCCCACTTCCTTCTCACCCCAGCGGCGTGGCCAACG
GGTTCAAGCTCCGTGGCCCGCTAGAGGCACGGTCGCCTTCACCCCGTGAT
TTCTACCTGGCACCCTTGCGGCCGGACGACTATTTGGAGGAGGCTTTCCG
GGCCTTCCGATCGTCAGAGGCCGGGGAACAGGAAGATGCTCAGGAGTTCT
TGGCCTTCCTCTTGGACCGGCTGCACGAAGAAGCCGTGGGGGCGGGGGCG
GGGGGGGGGAAGGGAAAGGGGCGAAGGAGGAGGAGGAGGGGGAAGGGGGT
TGGCAGGAAGTCGGGGAGAAAGGCCGCGTCGCCAAGCTCTCTGTGAGCGG
GGTCAAGCGGACCGAGAAGGGGACCACGGACGTATCGGCGATTTCCCGCC
TCTTCTATGGGCGGGAGCGCTCGGACATAAGGAGGGCGACGAGTCGGAGC
ATTTCGGCGACGATGACAAGGTTCAATTGTCTTCAGCTGGACTTGCCGCC
CCTGGGTGGCGGGGGGAAGAAGGAAGTGGCATTAGAGGAGGTAATCGAGC
ATTCCTTCCGGGAGGAGGTGATCGAAAGCAGCGACGGAACATTCCTTCGG
AAAAAGCTCTGCCTGGATGCGCTCCCTCCCGTCCTCATTCTCCACCTCAA
GCGCTTCATTTTTGATCTCCATCAAGGGGTGGGCGTCAAGCTGCACCACA
GAGTCCACTATCCGTCCTGCCTCAGGCTGCCTTCTCAGATGCTCTCAGTA
AGTCTGCGGACGACGGCCGGGATCGAGGGGGGGAAAGGCGAGGGAAAGGG
CCCTGCATACGAGCTGTTTGCGGTGGGGCTGCACTATGGTCGTTCCTTGA
ACGGTGGCCACTACACGGTGTTTTGCAAGGAGGGGGGGGGTGGAAAGGAA
TGGGTGGGATACGACGACGAGCGCGTCGATCGGGTTCAAGAATGGGAGGT
AAAGAGTTATACAGAGCAAGTCTACCTCCTTTTCTATGAACGGGTGTAGG
TTGGGGAGAGAGAGGGGTCGGTGGGAAGGGAAAGACGGGGCTGTACAGCG
GTCAGGCACGGATGGTGGAAAATCGTTCAAATGAAGTAAGCTACCGGCGA
CTACCCCTTGCTTGGCTCGTTTTTAGGAAAATTCTAGTCGTTCGCGTTCT
GCCTCCTGCGTACATTTTGCCCATCTTTTAAAATTTTAAAGGGGGTCATG
CAGACGGTGGAAGCTTAGCCACGCAGGCTTTCCGCTCCGTGTAACCAATG
GTCAGGACTAGGCAATGCATGGGCAGAGATTGTGCCACGGCTCAAGCTCG
TGCTGGCGAGTTGATCGGGGCAGCATCCAAAATAGAGCTTGATTCCGGCG
ACAGTGGTGGGAATCGAGATTGTGTCAGGAATAAGGATAGCATTCGGACT
GTGCGACAGCTACGACTAGAGCGGGATGGTAGACTACACGCAAGGGCAGA
GGCCTCGTGGGACAGGCGGACCCTGGCAATTGAAGCTACGTACCCCTGTG
GAAATTAAGCGTAAAAACCGTCTTACAAAGT back to topprotein sequence of rna5746 >rna5746-protein ID=rna5746-protein|Name=rna5746|organism=Nannochloropsis gaditana|type=polypeptide|length=217bp
MRPTLQPAMLFLLISCISVQSFVVRGKMPSSCRRTTVAISSASSSLPSSN
PIIISIRRLLSFAPILLLGPFLDVPTAHAISGGGKDYAEAKIADQDFSGK
DFSKKDFSGAFAQRANFKGAKLMGARFYKSALTEADFTGADLTSASFEGA
NMVDAILKDAIVNNAYFTETVLKVGSIEGADFSDTLLDRFVQKKLCEKAT
GTNPKTKVDTRESLLCD back to topmRNA from alignment at CM002466.1:746680..748402- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5746 ID=rna5746|Name=rna5746|organism=Nannochloropsis gaditana|type=mRNA|length=1723bp|location=Sequence derived from alignment at CM002466.1:746680..748402- (Nannochloropsis gaditana)
TGCTTCGCGAGTCACGAAGAACGACGCTAGATTGAAAACGAGAAAAGCGA
TAGCGCAACTGGTGTTTTTTTCCCCACGAGCAACTCAGTATAACTCCATG
GATACAGCATCGATTGACGTTTATCTGACCTTTCAATATTTTTGTTGCCT
TCTTTAGAGGCCTCACTTCCAACTCCGCTCTATCTAACCTCCTGCCTGTC
GAACCCCGTGGACAATGAATCATTCCTTTCAATGACTTGAAGCTATTGCT
TCTTACCTTGTCCCCATACAGCAGCACCCACAGCCATGCGTCCGACACTG
CAACCTGCTATGCTTTTTCTCCTGATCAGTTGCATTAGCGTCCAATCTTT
TGTTGTACGGGGAAAGATGCCTTCGTCTTGCCGCAGGTCAGCTGATTTTC
CCTTCATGTCCGTGACGTCTTTCTTAGTGCCCTGAAAGTATCCATAGGGA
CACACATCTTATCTGATTTCGAATAAAAAATACTAAGGACAACGGTGGCA
ATTTCTTCAGCATCGTCATCCTTGCCATCCTCAAATCCCATCATCATCTC
CATCCGCCGGCTTCTGAGTTTTGCTCCGATTCTTCTCCTCGGTCCGTTTT
TGGATGTACCCACTGCACACGCCATTTCCGGTGGAGGAAAAGATTACGCA
GAGGCCAAAATTGCAGATCAAGACTTCAGTGGAAAAGACTTCAGTAAAAA
AGACTTTTCGGGGGCTTTTGCGGTGGGTCATGGTTTTGGCGGGGTACGGG
GGAGGGATTTTTGATGGGGTAGTGAGTCCCTATTGAAGGCAGGAGTGTGA
ATCAAGCAATTTATCAAGCCATTTATCAAGCAATTTATATTTCTGTATTT
AATAAATTCAAATTACGTGCATGCAGCAACGCGCCAATTTCAAGGGAGCA
AAGCTTATGGGTGCGCGTTTTTACAAGTCGGCCTTGACTGAGGCTGATTT
TACCGGTAGGTTTCCTTGAGAAAGAGCAGCGAGCCACACAGAGATGCAAA
ACATCAAAAACATAAATGTAACATATCCAAGGGCATGACATTATCTATCA
GCAAATTTATCGCTTGCTTTCACCGCATTTCCCCGCAGGAGCCGACCTAA
CCAGCGCCTCCTTCGAGGGAGCGAATATGGTCGACGCTATTCTCAAGGAC
GCGATCGTCAACAACGCCTACTTCACGGAAACAGTCCTGAAAGTTGGTTC
CATTGAGGGTGCGGATTTCTCCGACACGTTGCTCGACCGTTTCGTTCAAA
AAAAGCTCTGCGAGAAGGCGACAGGTACGCAGAGTGTTGGAGCCACGGTT
GGCATGGGTGCCGGAGTGTGTGGAGAATGTCTTGGACTCTTGGAGGGGCG
GAAATTTTGAGGCCTCGATGAACAAGCTCAAACTCGGACAATTGTTTTCC
TGCAGGCACGAATCCCAAGACCAAGGTAGACACCCGCGAGTCACTGTTGT
GCGACTAAGGCTTCAGATAAGCTAGGCAAAGCAGTGCCCCGAGGTGAAAA
CTCTCTTTTTTTTTGAAAAAAAAGCTAAAAAAGAATGGGTTTTGATGAAA
GAGGGAGGAAAGAGGTAGATTATGTGCGAGCCTTGCCGTGGAGAGGATCG
TCATTACCATAAGGGCTCTTCCGCCGGTGCGCCATCCTCGCAGGGCCTTT
TAAAAGGTCATGGCAAAGTGACCACCTCCATCAACTAGCAACAAAGGAAA
AATATAAGAGATGCGGTTAGTCG back to topCoding sequence (CDS) from alignment at CM002466.1:746680..748402- >rna5746 ID=rna5746|Name=rna5746|organism=Nannochloropsis gaditana|type=CDS|length=3270bp|location=Sequence derived from alignment at CM002466.1:746680..748402- (Nannochloropsis gaditana)
GCACGAATCCCAAGACCAAGGTAGACACCCGCGAGTCACTGTTGTGCGAC
TAAGAGCCGACCTAACCAGCGCCTCCTTCGAGGGAGCGAATATGGTCGAC
GCTATTCTCAAGGACGCGATCGTCAACAACGCCTACTTCACGGAAACAGT
CCTGAAAGTTGGTTCCATTGAGGGTGCGGATTTCTCCGACACGTTGCTCG
ACCGTTTCGTTCAAAAAAAGCTCTGCGAGAAGGCGACAGCAACGCGCCAA
TTTCAAGGGAGCAAAGCTTATGGGTGCGCGTTTTTACAAGTCGGCCTTGA
CTGAGGCTGATTTTACCGGACAACGGTGGCAATTTCTTCAGCATCGTCAT
CCTTGCCATCCTCAAATCCCATCATCATCTCCATCCGCCGGCTTCTGAGT
TTTGCTCCGATTCTTCTCCTCGGTCCGTTTTTGGATGTACCCACTGCACA
CGCCATTTCCGGTGGAGGAAAAGATTACGCAGAGGCCAAAATTGCAGATC
AAGACTTCAGTGGAAAAGACTTCAGTAAAAAAGACTTTTCGGGGGCTTTT
GCGATGCGTCCGACACTGCAACCTGCTATGCTTTTTCTCCTGATCAGTTG
CATTAGCGTCCAATCTTTTGTTGTACGGGGAAAGATGCCTTCGTCTTGCC
GCAGGCACGAATCCCAAGACCAAGGTAGACACCCGCGAGTCACTGTTGTG
CGACTAAGAGCCGACCTAACCAGCGCCTCCTTCGAGGGAGCGAATATGGT
CGACGCTATTCTCAAGGACGCGATCGTCAACAACGCCTACTTCACGGAAA
CAGTCCTGAAAGTTGGTTCCATTGAGGGTGCGGATTTCTCCGACACGTTG
CTCGACCGTTTCGTTCAAAAAAAGCTCTGCGAGAAGGCGACAGCAACGCG
CCAATTTCAAGGGAGCAAAGCTTATGGGTGCGCGTTTTTACAAGTCGGCC
TTGACTGAGGCTGATTTTACCGGACAACGGTGGCAATTTCTTCAGCATCG
TCATCCTTGCCATCCTCAAATCCCATCATCATCTCCATCCGCCGGCTTCT
GAGTTTTGCTCCGATTCTTCTCCTCGGTCCGTTTTTGGATGTACCCACTG
CACACGCCATTTCCGGTGGAGGAAAAGATTACGCAGAGGCCAAAATTGCA
GATCAAGACTTCAGTGGAAAAGACTTCAGTAAAAAAGACTTTTCGGGGGC
TTTTGCGATGCGTCCGACACTGCAACCTGCTATGCTTTTTCTCCTGATCA
GTTGCATTAGCGTCCAATCTTTTGTTGTACGGGGAAAGATGCCTTCGTCT
TGCCGCAGGCACGAATCCCAAGACCAAGGTAGACACCCGCGAGTCACTGT
TGTGCGACTAAGAGCCGACCTAACCAGCGCCTCCTTCGAGGGAGCGAATA
TGGTCGACGCTATTCTCAAGGACGCGATCGTCAACAACGCCTACTTCACG
GAAACAGTCCTGAAAGTTGGTTCCATTGAGGGTGCGGATTTCTCCGACAC
GTTGCTCGACCGTTTCGTTCAAAAAAAGCTCTGCGAGAAGGCGACAGCAA
CGCGCCAATTTCAAGGGAGCAAAGCTTATGGGTGCGCGTTTTTACAAGTC
GGCCTTGACTGAGGCTGATTTTACCGGACAACGGTGGCAATTTCTTCAGC
ATCGTCATCCTTGCCATCCTCAAATCCCATCATCATCTCCATCCGCCGGC
TTCTGAGTTTTGCTCCGATTCTTCTCCTCGGTCCGTTTTTGGATGTACCC
ACTGCACACGCCATTTCCGGTGGAGGAAAAGATTACGCAGAGGCCAAAAT
TGCAGATCAAGACTTCAGTGGAAAAGACTTCAGTAAAAAAGACTTTTCGG
GGGCTTTTGCGATGCGTCCGACACTGCAACCTGCTATGCTTTTTCTCCTG
ATCAGTTGCATTAGCGTCCAATCTTTTGTTGTACGGGGAAAGATGCCTTC
GTCTTGCCGCAGGCACGAATCCCAAGACCAAGGTAGACACCCGCGAGTCA
CTGTTGTGCGACTAAGAGCCGACCTAACCAGCGCCTCCTTCGAGGGAGCG
AATATGGTCGACGCTATTCTCAAGGACGCGATCGTCAACAACGCCTACTT
CACGGAAACAGTCCTGAAAGTTGGTTCCATTGAGGGTGCGGATTTCTCCG
ACACGTTGCTCGACCGTTTCGTTCAAAAAAAGCTCTGCGAGAAGGCGACA
GCAACGCGCCAATTTCAAGGGAGCAAAGCTTATGGGTGCGCGTTTTTACA
AGTCGGCCTTGACTGAGGCTGATTTTACCGGACAACGGTGGCAATTTCTT
CAGCATCGTCATCCTTGCCATCCTCAAATCCCATCATCATCTCCATCCGC
CGGCTTCTGAGTTTTGCTCCGATTCTTCTCCTCGGTCCGTTTTTGGATGT
ACCCACTGCACACGCCATTTCCGGTGGAGGAAAAGATTACGCAGAGGCCA
AAATTGCAGATCAAGACTTCAGTGGAAAAGACTTCAGTAAAAAAGACTTT
TCGGGGGCTTTTGCGATGCGTCCGACACTGCAACCTGCTATGCTTTTTCT
CCTGATCAGTTGCATTAGCGTCCAATCTTTTGTTGTACGGGGAAAGATGC
CTTCGTCTTGCCGCAGGCACGAATCCCAAGACCAAGGTAGACACCCGCGA
GTCACTGTTGTGCGACTAAGAGCCGACCTAACCAGCGCCTCCTTCGAGGG
AGCGAATATGGTCGACGCTATTCTCAAGGACGCGATCGTCAACAACGCCT
ACTTCACGGAAACAGTCCTGAAAGTTGGTTCCATTGAGGGTGCGGATTTC
TCCGACACGTTGCTCGACCGTTTCGTTCAAAAAAAGCTCTGCGAGAAGGC
GACAGCAACGCGCCAATTTCAAGGGAGCAAAGCTTATGGGTGCGCGTTTT
TACAAGTCGGCCTTGACTGAGGCTGATTTTACCGGACAACGGTGGCAATT
TCTTCAGCATCGTCATCCTTGCCATCCTCAAATCCCATCATCATCTCCAT
CCGCCGGCTTCTGAGTTTTGCTCCGATTCTTCTCCTCGGTCCGTTTTTGG
ATGTACCCACTGCACACGCCATTTCCGGTGGAGGAAAAGATTACGCAGAG
GCCAAAATTGCAGATCAAGACTTCAGTGGAAAAGACTTCAGTAAAAAAGA
CTTTTCGGGGGCTTTTGCGATGCGTCCGACACTGCAACCTGCTATGCTTT
TTCTCCTGATCAGTTGCATTAGCGTCCAATCTTTTGTTGTACGGGGAAAG
ATGCCTTCGTCTTGCCGCAG back to top
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