EWM24950.1, cds5731 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24950.1 vs. NCBI_GenBank
Match: gi|553179731|ref|XP_005852753.1| (pentapeptide repeat protein [Nannochloropsis gaditana CCMP526] >gi|422295781|gb|EKU23080.1| pentapeptide repeat protein [Nannochloropsis gaditana CCMP526] >gi|585106580|gb|EWM24950.1| pentapeptide repeat protein [Nannochloropsis gaditana]) HSP 1 Score: 439.113 bits (1128), Expect = 6.796e-156 Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0 Query: 1 MRPTLQPAMLFLLISCISVQSFVVRGKMPSSCRRTTVAISSASSSLPSSNPIIISIRRLLSFAPILLLGPFLDVPTAHAISGGGKDYAEAKIADQDFSGKDFSKKDFSGAFAQRANFKGAKLMGARFYKSALTEADFTGADLTSASFEGANMVDAILKDAIVNNAYFTETVLKVGSIEGADFSDTLLDRFVQKKLCEKATGTNPKTKVDTRESLLCD 217 MRPTLQPAMLFLLISCISVQSFVVRGKMPSSCRRTTVAISSASSSLPSSNPIIISIRRLLSFAPILLLGPFLDVPTAHAISGGGKDYAEAKIADQDFSGKDFSKKDFSGAFAQRANFKGAKLMGARFYKSALTEADFTGADLTSASFEGANMVDAILKDAIVNNAYFTETVLKVGSIEGADFSDTLLDRFVQKKLCEKATGTNPKTKVDTRESLLCD Sbjct: 1 MRPTLQPAMLFLLISCISVQSFVVRGKMPSSCRRTTVAISSASSSLPSSNPIIISIRRLLSFAPILLLGPFLDVPTAHAISGGGKDYAEAKIADQDFSGKDFSKKDFSGAFAQRANFKGAKLMGARFYKSALTEADFTGADLTSASFEGANMVDAILKDAIVNNAYFTETVLKVGSIEGADFSDTLLDRFVQKKLCEKATGTNPKTKVDTRESLLCD 217
BLAST of EWM24950.1 vs. NCBI_GenBank
Match: gi|551639286|ref|XP_005822453.1| (hypothetical protein GUITHDRAFT_97823, partial [Guillardia theta CCMP2712] >gi|428166498|gb|EKX35473.1| hypothetical protein GUITHDRAFT_97823, partial [Guillardia theta CCMP2712]) HSP 1 Score: 139.428 bits (350), Expect = 1.730e-37 Identity = 76/141 (53.90%), Postives = 98/141 (69.50%), Query Frame = 0 Query: 78 HAISGGGKDYAEAKIADQDFSGKDFSKKDFSGAFAQRANFKGAKLMGARFYKSALTEADFTGADLTSASFEGANMVDAILKDAIVNNAYFTETVLKVGSIEGADFSDTLLDRFVQKKLCEK--ATGTNPKTKVDTRESLLC 216 +A+SGG D+ + + QD SGKDFSKKDFSG A+ A F G KL G RF+K+ LT ADFTGADL++AS E A + +LK+AI++N+Y + KV I GADF+D L+ + KLC++ ATGTNP TK DTRESL C Sbjct: 92 NAVSGGVADFVD--VQGQDLSGKDFSKKDFSGCAAKEAKFVGTKLRGTRFFKADLTGADFTGADLSTASLEDAKLDGVVLKNAILSNSYTNLGLDKVKDISGADFTDALVRPDILAKLCKRSDATGTNPVTKADTRESLGC 230
BLAST of EWM24950.1 vs. NCBI_GenBank
Match: gi|298711847|emb|CBJ32870.1| (Pentapeptide repeat [Ectocarpus siliculosus]) HSP 1 Score: 139.428 bits (350), Expect = 2.076e-37 Identity = 76/162 (46.91%), Postives = 102/162 (62.96%), Query Frame = 0 Query: 60 LSFAPILLLG-PFLDVPT-AHAISGGGKDYAEAKIADQDFSGKDFSKKDFSGAFAQRANFKGAKLMGARFYKSALTEADFTGADLTSASFEGANMVDAILKDAIVNNAYFTETVLKVGSIEGADFSDTLLDRFVQKKLCEK--ATGTNPKTKVDTRESLLCD 217 + A +L+ G P L P+ A AISGGG DYA + QD S + KDFSG+ A+ NF G+ L G RF+K+ L +ADFTGA+L +AS E A++ I+ +A+ +YF + VG I GADF+D L+ + V K LC + A GTNP T DTR+SLLCD Sbjct: 75 WTLAAVLVAGVPLLVNPSPAVAISGGGLDYAGLNLTGQDLSKGKYKSKDFSGSIAKEVNFSGSDLRGVRFFKADLKKADFTGANLGTASLEEADLEGTIMTNAVATGSYFGNNMNNVGDISGADFTDALIRKDVAKILCARPDAKGTNPTTGTDTRDSLLCD 236
BLAST of EWM24950.1 vs. NCBI_GenBank
Match: gi|873220470|emb|CEM35660.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 136.732 bits (343), Expect = 5.205e-37 Identity = 78/164 (47.56%), Postives = 105/164 (64.02%), Query Frame = 0 Query: 56 IRRLLSFAPILLLGPFLDVPTAHAISGGGKDYAEAKIADQDFSGKDFSKKDFSGAFAQRANFKGAKLMGARFYKSALTEADFTGADLTSASFEGANMVDAILKDAIVNNAYFTETVL-KVGSIEGADFSDTLLDRFVQKKLCEK--ATGTNPKTKVDTRESLLC 216 +R + FA + L L A A+SGGGKDY+ +++QD SG+ F KDFS A A+ NFKG+ L G RFYK+ L AD +GA + +ASFE A + LK+A ++AYF+ + L KV SIE +DFS+ L+ + V + LCE+ A G NP T VDTRESL C Sbjct: 20 LREMAWFAGAVALIQTLRT-NAEAVSGGGKDYSGLNLSNQDLSGQSFIGKDFSQAIAEGTNFKGSDLSGTRFYKANLKGADLSGAKMRAASFEAAQLDGVSLKNADASSAYFSGSSLDKVESIENSDFSEALMRQGVNRMLCEREDAKGVNPSTGVDTRESLNC 182
BLAST of EWM24950.1 vs. NCBI_GenBank
Match: gi|676387079|ref|XP_009036818.1| (hypothetical protein AURANDRAFT_25565 [Aureococcus anophagefferens] >gi|323452967|gb|EGB08840.1| hypothetical protein AURANDRAFT_25565 [Aureococcus anophagefferens]) HSP 1 Score: 132.494 bits (332), Expect = 1.717e-35 Identity = 70/138 (50.72%), Postives = 90/138 (65.22%), Query Frame = 0 Query: 79 AISGGGKDYAEAKIADQDFSGKDFSKKDFSGAFAQRANFKGAKLMGARFYKSALTEADFTGADLTSASFEGANMVDAILKDAIVNNAYFTETVLKVGSIEGADFSDTLLDRFVQKKLCEKATGTNPKTKVDTRESLLC 216 A+SGGGKDYAEA I QDFSGK F+ KDFSG A NF +KL GARF+K+ L ADF+GADL++AS EGAN+ L A+ F++T+L G + GADF+D ++ +VQK LC + T TR+SL C Sbjct: 43 AVSGGGKDYAEATIKGQDFSGKTFNNKDFSGCDAVDTNFAKSKLRGARFFKADLARADFSGADLSAASLEGANLEGTKLTGALAEGTAFSQTILDAGDLTGADFTDAVIQPYVQKGLCGRKDVTGA-----TRDSLFC 175
BLAST of EWM24950.1 vs. NCBI_GenBank
Match: gi|551628179|ref|XP_005794070.1| (hypothetical protein EMIHUDRAFT_425734 [Emiliania huxleyi CCMP1516] >gi|485648735|gb|EOD41641.1| hypothetical protein EMIHUDRAFT_425734 [Emiliania huxleyi CCMP1516]) HSP 1 Score: 128.257 bits (321), Expect = 2.862e-34 Identity = 64/140 (45.71%), Postives = 94/140 (67.14%), Query Frame = 0 Query: 79 AISGGGKDYAEAKIADQDFSGKDFSKKDFSGAFAQRANFKGAKLMGARFYKSALTEADFTGADLTSASFEGANMVDAILKDAIVNNAYFTETVLKVGSIEGADFSDTLLDRFVQKKLCEK--ATGTNPKTKVDTRESLLC 216 A+SGGGKDY+ + QD G+ + K+F G FA+ A+FK +KL G F+K+ ++E DF+GADL+SAS E A + A++ A++ +AY T+T+ SI+GADF++ ++ QK LC + A G NP T DTRESL+C Sbjct: 2 AVSGGGKDYSGFDLTGQDLGGQTLNGKEFRGTFAKGASFKDSKLRGCSFFKADMSEVDFSGADLSSASLEEAGLTGALMDGAVLESAYLTKTIADAESIKGADFTEAVMPLPTQKALCARADAIGKNPTTGADTRESLMC 141
BLAST of EWM24950.1 vs. NCBI_GenBank
Match: gi|544216080|ref|XP_005538185.1| (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >gi|449018747|dbj|BAM82149.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D]) HSP 1 Score: 132.109 bits (331), Expect = 3.290e-34 Identity = 65/142 (45.77%), Postives = 94/142 (66.20%), Query Frame = 0 Query: 77 AHAISGGGKDYAEAKIADQDFSGKDFSKKDFSGAFAQRANFKGAKLMGARFYKSALTEADFTGADLTSASFEGANMVDAILKDAIVNNAYFTETVLKVGSIEGADFSDTLLDRFVQKKLCEK--ATGTNPKTKVDTRESLLC 216 A AISGGG DYA ++++QD S + S+KDFSG+ ++ NF G+ L GARF+K+ LTEA+F A L AS E + + ++A++ + Y+TE+VL + +IE D++D LL+ Q KLC + A G N T DTRESL+C Sbjct: 126 AVAISGGGLDYAGQQLSEQDLSHRKLSQKDFSGSTCRKTNFSGSDLSGARFFKADLTEANFENAQLIGASLEQTVLRGSNFQNAVLRSTYWTESVLTIANIENTDWTDALLEPTWQMKLCSRSDAKGMNTLTNTDTRESLMC 267
BLAST of EWM24950.1 vs. NCBI_GenBank
Match: gi|1189391718|gb|OSX78645.1| (hypothetical protein BU14_0104s0019 [Porphyra umbilicalis]) HSP 1 Score: 129.028 bits (323), Expect = 2.336e-33 Identity = 67/139 (48.20%), Postives = 91/139 (65.47%), Query Frame = 0 Query: 80 ISGGGKDYAEAKIADQDFSGKDFSKKDFSGAFAQRANFKGAKLMGARFYKSALTEADFTGADLTSASFEGANMVDAILKDAIVNNAYFTETVLKVGSIEGADFSDTLLDRFVQKKLCEK--ATGTNPKTKVDTRESLLC 216 ISGGG DYA + DFS +++ KDFSGA +RA+F GA L GARF+K+ L +ADFTGADL+ AS EGA + A L A+ Y +++VL V + G+D++D L V ++LC + A G N T+V TRESL+C Sbjct: 92 ISGGGNDYASKEFPGADFSHGNYAGKDFSGANFRRASFVGANLRGARFFKTILADADFTGADLSGASIEGAILRGAKLSQAVCEGTYVSDSVLDVAEVGGSDWTDVLFPIKVAERLCARADAAGINTATEVGTRESLMC 230
BLAST of EWM24950.1 vs. NCBI_GenBank
Match: gi|397645344|gb|EJK76787.1| (hypothetical protein THAOC_01435 [Thalassiosira oceanica]) HSP 1 Score: 118.242 bits (295), Expect = 2.494e-29 Identity = 73/195 (37.44%), Postives = 104/195 (53.33%), Query Frame = 0 Query: 34 RTTVAISSASSSLPSSNPIIISIRRL-----LSFAPILL-----LGPFLDVPTAHAISGGGKDYAEAKIADQDFSGKDFSKKDFSGAFAQRANFKGAKLMGARFYKSALTEADFTGADLTSASFEGANMVDAILKDAIVNNAYFTETVLKVGSIEGADFSDTLLDRFVQKKLC--EKATGTNPKTKVDTRESLLC 216 R+T S S + +++ + IR L S AP L LGP A+SGGG DYA + QDF ++ KDF+ A+ F + L G RFYK+ L ADF+GAD A+FE +M A L++ + + +YF +++L V S+EG DF+D + K +C E GTNP T DTR+SL+C Sbjct: 33 RSTSLDSERSQTADATDAADVRIRSLGSHLTRSLAPTLAAASIALGPL----ACGAVSGGGMDYANLNLTGQDFGNGNYKGKDFTQIIAKGTIFSKSNLQGCRFYKAYLVNADFSGADARGAAFEDTSMDGANLRNIVASGSYFGQSLLDVESLEGGDFTDAQIPPKTLKLVCDREDVKGTNPTTGADTRDSLMC 223
BLAST of EWM24950.1 vs. NCBI_GenBank
Match: gi|1049311847|gb|OCQ90122.1| (hypothetical protein BCD64_19545 [Nostoc sp. MBR 210]) HSP 1 Score: 115.931 bits (289), Expect = 5.819e-29 Identity = 72/176 (40.91%), Postives = 103/176 (58.52%), Query Frame = 0 Query: 46 LPSSNPIIISIRRLLSFAPILLLGPFLDVPTAHAISGGGKDYAEAKIADQDFSGKDFSKKDFSGAFAQRANFKGAKLMGARFYKSALTEADFTGADLTSA-----SFEGANMVDAILKDAIVNNAYFTETVLKVGSIEGADFSDTLLDRFVQKKLCEKATGTNPKTKVDTRESLLC 216 + S+ +I+ I L LL P L V H +S ++ A++A +DFSG+ +FS A + ANF GA L GA S +T+A+ ADLT+A + GA++ DA+LK+A++ A FT+ +I+GADF+D +LDR K+LC KA+G N KT VDTRESL C Sbjct: 21 IKSNQWLIVGILTL-----CLLPAPALAVDWTHPLS-----FSNAQLARRDFSGETLQAAEFSNANMEMANFTGADLRGAVLSASVMTKANLHQADLTNAMVDQVNLTGADLSDAVLKEALLLRALFTDV-----NIQGADFTDAVLDRAQIKELCSKASGVNSKTGVDTRESLGC 181 The following BLAST results are available for this feature:
BLAST of EWM24950.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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