EWM24950.1, cds5731 (CDS) Nannochloropsis gaditana

Overview
NameEWM24950.1
Unique Namecds5731
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:748017..748117 -
Alignment locationCM002466.1:747681..747915 -
Alignment locationCM002466.1:747448..747526 -
Alignment locationCM002466.1:747129..747314 -
Alignment locationCM002466.1:746945..746997 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24950.1
Productpentapeptide repeat protein
Orig transcript idgnl|cribi|Naga_100086g16.3850.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:748017..748117 -
CM002466.1supercontigCM002466.1:747681..747915 -
CM002466.1supercontigCM002466.1:747448..747526 -
CM002466.1supercontigCM002466.1:747129..747314 -
CM002466.1supercontigCM002466.1:746945..746997 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR0016465peptide_repeat
Homology
BLAST of EWM24950.1 vs. NCBI_GenBank
Match: gi|553179731|ref|XP_005852753.1| (pentapeptide repeat protein [Nannochloropsis gaditana CCMP526] >gi|422295781|gb|EKU23080.1| pentapeptide repeat protein [Nannochloropsis gaditana CCMP526] >gi|585106580|gb|EWM24950.1| pentapeptide repeat protein [Nannochloropsis gaditana])

HSP 1 Score: 439.113 bits (1128), Expect = 6.796e-156
Identity = 217/217 (100.00%), Postives = 217/217 (100.00%), Query Frame = 0
Query:    1 MRPTLQPAMLFLLISCISVQSFVVRGKMPSSCRRTTVAISSASSSLPSSNPIIISIRRLLSFAPILLLGPFLDVPTAHAISGGGKDYAEAKIADQDFSGKDFSKKDFSGAFAQRANFKGAKLMGARFYKSALTEADFTGADLTSASFEGANMVDAILKDAIVNNAYFTETVLKVGSIEGADFSDTLLDRFVQKKLCEKATGTNPKTKVDTRESLLCD 217
            MRPTLQPAMLFLLISCISVQSFVVRGKMPSSCRRTTVAISSASSSLPSSNPIIISIRRLLSFAPILLLGPFLDVPTAHAISGGGKDYAEAKIADQDFSGKDFSKKDFSGAFAQRANFKGAKLMGARFYKSALTEADFTGADLTSASFEGANMVDAILKDAIVNNAYFTETVLKVGSIEGADFSDTLLDRFVQKKLCEKATGTNPKTKVDTRESLLCD
Sbjct:    1 MRPTLQPAMLFLLISCISVQSFVVRGKMPSSCRRTTVAISSASSSLPSSNPIIISIRRLLSFAPILLLGPFLDVPTAHAISGGGKDYAEAKIADQDFSGKDFSKKDFSGAFAQRANFKGAKLMGARFYKSALTEADFTGADLTSASFEGANMVDAILKDAIVNNAYFTETVLKVGSIEGADFSDTLLDRFVQKKLCEKATGTNPKTKVDTRESLLCD 217          
BLAST of EWM24950.1 vs. NCBI_GenBank
Match: gi|551639286|ref|XP_005822453.1| (hypothetical protein GUITHDRAFT_97823, partial [Guillardia theta CCMP2712] >gi|428166498|gb|EKX35473.1| hypothetical protein GUITHDRAFT_97823, partial [Guillardia theta CCMP2712])

HSP 1 Score: 139.428 bits (350), Expect = 1.730e-37
Identity = 76/141 (53.90%), Postives = 98/141 (69.50%), Query Frame = 0
Query:   78 HAISGGGKDYAEAKIADQDFSGKDFSKKDFSGAFAQRANFKGAKLMGARFYKSALTEADFTGADLTSASFEGANMVDAILKDAIVNNAYFTETVLKVGSIEGADFSDTLLDRFVQKKLCEK--ATGTNPKTKVDTRESLLC 216
            +A+SGG  D+ +  +  QD SGKDFSKKDFSG  A+ A F G KL G RF+K+ LT ADFTGADL++AS E A +   +LK+AI++N+Y    + KV  I GADF+D L+   +  KLC++  ATGTNP TK DTRESL C
Sbjct:   92 NAVSGGVADFVD--VQGQDLSGKDFSKKDFSGCAAKEAKFVGTKLRGTRFFKADLTGADFTGADLSTASLEDAKLDGVVLKNAILSNSYTNLGLDKVKDISGADFTDALVRPDILAKLCKRSDATGTNPVTKADTRESLGC 230          
BLAST of EWM24950.1 vs. NCBI_GenBank
Match: gi|298711847|emb|CBJ32870.1| (Pentapeptide repeat [Ectocarpus siliculosus])

HSP 1 Score: 139.428 bits (350), Expect = 2.076e-37
Identity = 76/162 (46.91%), Postives = 102/162 (62.96%), Query Frame = 0
Query:   60 LSFAPILLLG-PFLDVPT-AHAISGGGKDYAEAKIADQDFSGKDFSKKDFSGAFAQRANFKGAKLMGARFYKSALTEADFTGADLTSASFEGANMVDAILKDAIVNNAYFTETVLKVGSIEGADFSDTLLDRFVQKKLCEK--ATGTNPKTKVDTRESLLCD 217
             + A +L+ G P L  P+ A AISGGG DYA   +  QD S   +  KDFSG+ A+  NF G+ L G RF+K+ L +ADFTGA+L +AS E A++   I+ +A+   +YF   +  VG I GADF+D L+ + V K LC +  A GTNP T  DTR+SLLCD
Sbjct:   75 WTLAAVLVAGVPLLVNPSPAVAISGGGLDYAGLNLTGQDLSKGKYKSKDFSGSIAKEVNFSGSDLRGVRFFKADLKKADFTGANLGTASLEEADLEGTIMTNAVATGSYFGNNMNNVGDISGADFTDALIRKDVAKILCARPDAKGTNPTTGTDTRDSLLCD 236          
BLAST of EWM24950.1 vs. NCBI_GenBank
Match: gi|873220470|emb|CEM35660.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 136.732 bits (343), Expect = 5.205e-37
Identity = 78/164 (47.56%), Postives = 105/164 (64.02%), Query Frame = 0
Query:   56 IRRLLSFAPILLLGPFLDVPTAHAISGGGKDYAEAKIADQDFSGKDFSKKDFSGAFAQRANFKGAKLMGARFYKSALTEADFTGADLTSASFEGANMVDAILKDAIVNNAYFTETVL-KVGSIEGADFSDTLLDRFVQKKLCEK--ATGTNPKTKVDTRESLLC 216
            +R +  FA  + L   L    A A+SGGGKDY+   +++QD SG+ F  KDFS A A+  NFKG+ L G RFYK+ L  AD +GA + +ASFE A +    LK+A  ++AYF+ + L KV SIE +DFS+ L+ + V + LCE+  A G NP T VDTRESL C
Sbjct:   20 LREMAWFAGAVALIQTLRT-NAEAVSGGGKDYSGLNLSNQDLSGQSFIGKDFSQAIAEGTNFKGSDLSGTRFYKANLKGADLSGAKMRAASFEAAQLDGVSLKNADASSAYFSGSSLDKVESIENSDFSEALMRQGVNRMLCEREDAKGVNPSTGVDTRESLNC 182          
BLAST of EWM24950.1 vs. NCBI_GenBank
Match: gi|676387079|ref|XP_009036818.1| (hypothetical protein AURANDRAFT_25565 [Aureococcus anophagefferens] >gi|323452967|gb|EGB08840.1| hypothetical protein AURANDRAFT_25565 [Aureococcus anophagefferens])

HSP 1 Score: 132.494 bits (332), Expect = 1.717e-35
Identity = 70/138 (50.72%), Postives = 90/138 (65.22%), Query Frame = 0
Query:   79 AISGGGKDYAEAKIADQDFSGKDFSKKDFSGAFAQRANFKGAKLMGARFYKSALTEADFTGADLTSASFEGANMVDAILKDAIVNNAYFTETVLKVGSIEGADFSDTLLDRFVQKKLCEKATGTNPKTKVDTRESLLC 216
            A+SGGGKDYAEA I  QDFSGK F+ KDFSG  A   NF  +KL GARF+K+ L  ADF+GADL++AS EGAN+    L  A+     F++T+L  G + GADF+D ++  +VQK LC +   T       TR+SL C
Sbjct:   43 AVSGGGKDYAEATIKGQDFSGKTFNNKDFSGCDAVDTNFAKSKLRGARFFKADLARADFSGADLSAASLEGANLEGTKLTGALAEGTAFSQTILDAGDLTGADFTDAVIQPYVQKGLCGRKDVTGA-----TRDSLFC 175          
BLAST of EWM24950.1 vs. NCBI_GenBank
Match: gi|551628179|ref|XP_005794070.1| (hypothetical protein EMIHUDRAFT_425734 [Emiliania huxleyi CCMP1516] >gi|485648735|gb|EOD41641.1| hypothetical protein EMIHUDRAFT_425734 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 128.257 bits (321), Expect = 2.862e-34
Identity = 64/140 (45.71%), Postives = 94/140 (67.14%), Query Frame = 0
Query:   79 AISGGGKDYAEAKIADQDFSGKDFSKKDFSGAFAQRANFKGAKLMGARFYKSALTEADFTGADLTSASFEGANMVDAILKDAIVNNAYFTETVLKVGSIEGADFSDTLLDRFVQKKLCEK--ATGTNPKTKVDTRESLLC 216
            A+SGGGKDY+   +  QD  G+  + K+F G FA+ A+FK +KL G  F+K+ ++E DF+GADL+SAS E A +  A++  A++ +AY T+T+    SI+GADF++ ++    QK LC +  A G NP T  DTRESL+C
Sbjct:    2 AVSGGGKDYSGFDLTGQDLGGQTLNGKEFRGTFAKGASFKDSKLRGCSFFKADMSEVDFSGADLSSASLEEAGLTGALMDGAVLESAYLTKTIADAESIKGADFTEAVMPLPTQKALCARADAIGKNPTTGADTRESLMC 141          
BLAST of EWM24950.1 vs. NCBI_GenBank
Match: gi|544216080|ref|XP_005538185.1| (hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D] >gi|449018747|dbj|BAM82149.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain 10D])

HSP 1 Score: 132.109 bits (331), Expect = 3.290e-34
Identity = 65/142 (45.77%), Postives = 94/142 (66.20%), Query Frame = 0
Query:   77 AHAISGGGKDYAEAKIADQDFSGKDFSKKDFSGAFAQRANFKGAKLMGARFYKSALTEADFTGADLTSASFEGANMVDAILKDAIVNNAYFTETVLKVGSIEGADFSDTLLDRFVQKKLCEK--ATGTNPKTKVDTRESLLC 216
            A AISGGG DYA  ++++QD S +  S+KDFSG+  ++ NF G+ L GARF+K+ LTEA+F  A L  AS E   +  +  ++A++ + Y+TE+VL + +IE  D++D LL+   Q KLC +  A G N  T  DTRESL+C
Sbjct:  126 AVAISGGGLDYAGQQLSEQDLSHRKLSQKDFSGSTCRKTNFSGSDLSGARFFKADLTEANFENAQLIGASLEQTVLRGSNFQNAVLRSTYWTESVLTIANIENTDWTDALLEPTWQMKLCSRSDAKGMNTLTNTDTRESLMC 267          
BLAST of EWM24950.1 vs. NCBI_GenBank
Match: gi|1189391718|gb|OSX78645.1| (hypothetical protein BU14_0104s0019 [Porphyra umbilicalis])

HSP 1 Score: 129.028 bits (323), Expect = 2.336e-33
Identity = 67/139 (48.20%), Postives = 91/139 (65.47%), Query Frame = 0
Query:   80 ISGGGKDYAEAKIADQDFSGKDFSKKDFSGAFAQRANFKGAKLMGARFYKSALTEADFTGADLTSASFEGANMVDAILKDAIVNNAYFTETVLKVGSIEGADFSDTLLDRFVQKKLCEK--ATGTNPKTKVDTRESLLC 216
            ISGGG DYA  +    DFS  +++ KDFSGA  +RA+F GA L GARF+K+ L +ADFTGADL+ AS EGA +  A L  A+    Y +++VL V  + G+D++D L    V ++LC +  A G N  T+V TRESL+C
Sbjct:   92 ISGGGNDYASKEFPGADFSHGNYAGKDFSGANFRRASFVGANLRGARFFKTILADADFTGADLSGASIEGAILRGAKLSQAVCEGTYVSDSVLDVAEVGGSDWTDVLFPIKVAERLCARADAAGINTATEVGTRESLMC 230          
BLAST of EWM24950.1 vs. NCBI_GenBank
Match: gi|397645344|gb|EJK76787.1| (hypothetical protein THAOC_01435 [Thalassiosira oceanica])

HSP 1 Score: 118.242 bits (295), Expect = 2.494e-29
Identity = 73/195 (37.44%), Postives = 104/195 (53.33%), Query Frame = 0
Query:   34 RTTVAISSASSSLPSSNPIIISIRRL-----LSFAPILL-----LGPFLDVPTAHAISGGGKDYAEAKIADQDFSGKDFSKKDFSGAFAQRANFKGAKLMGARFYKSALTEADFTGADLTSASFEGANMVDAILKDAIVNNAYFTETVLKVGSIEGADFSDTLLDRFVQKKLC--EKATGTNPKTKVDTRESLLC 216
            R+T   S  S +  +++   + IR L      S AP L      LGP        A+SGGG DYA   +  QDF   ++  KDF+   A+   F  + L G RFYK+ L  ADF+GAD   A+FE  +M  A L++ + + +YF +++L V S+EG DF+D  +     K +C  E   GTNP T  DTR+SL+C
Sbjct:   33 RSTSLDSERSQTADATDAADVRIRSLGSHLTRSLAPTLAAASIALGPL----ACGAVSGGGMDYANLNLTGQDFGNGNYKGKDFTQIIAKGTIFSKSNLQGCRFYKAYLVNADFSGADARGAAFEDTSMDGANLRNIVASGSYFGQSLLDVESLEGGDFTDAQIPPKTLKLVCDREDVKGTNPTTGADTRDSLMC 223          
BLAST of EWM24950.1 vs. NCBI_GenBank
Match: gi|1049311847|gb|OCQ90122.1| (hypothetical protein BCD64_19545 [Nostoc sp. MBR 210])

HSP 1 Score: 115.931 bits (289), Expect = 5.819e-29
Identity = 72/176 (40.91%), Postives = 103/176 (58.52%), Query Frame = 0
Query:   46 LPSSNPIIISIRRLLSFAPILLLGPFLDVPTAHAISGGGKDYAEAKIADQDFSGKDFSKKDFSGAFAQRANFKGAKLMGARFYKSALTEADFTGADLTSA-----SFEGANMVDAILKDAIVNNAYFTETVLKVGSIEGADFSDTLLDRFVQKKLCEKATGTNPKTKVDTRESLLC 216
            + S+  +I+ I  L      LL  P L V   H +S     ++ A++A +DFSG+     +FS A  + ANF GA L GA    S +T+A+   ADLT+A     +  GA++ DA+LK+A++  A FT+      +I+GADF+D +LDR   K+LC KA+G N KT VDTRESL C
Sbjct:   21 IKSNQWLIVGILTL-----CLLPAPALAVDWTHPLS-----FSNAQLARRDFSGETLQAAEFSNANMEMANFTGADLRGAVLSASVMTKANLHQADLTNAMVDQVNLTGADLSDAVLKEALLLRALFTDV-----NIQGADFTDAVLDRAQIKELCSKASGVNSKTGVDTRESLGC 181          
The following BLAST results are available for this feature:
BLAST of EWM24950.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553179731|ref|XP_005852753.1|6.796e-156100.00pentapeptide repeat protein [Nannochloropsis gadit... [more]
gi|551639286|ref|XP_005822453.1|1.730e-3753.90hypothetical protein GUITHDRAFT_97823, partial [Gu... [more]
gi|298711847|emb|CBJ32870.1|2.076e-3746.91Pentapeptide repeat [Ectocarpus siliculosus][more]
gi|873220470|emb|CEM35660.1|5.205e-3747.56unnamed protein product [Vitrella brassicaformis C... [more]
gi|676387079|ref|XP_009036818.1|1.717e-3550.72hypothetical protein AURANDRAFT_25565 [Aureococcus... [more]
gi|551628179|ref|XP_005794070.1|2.862e-3445.71hypothetical protein EMIHUDRAFT_425734 [Emiliania ... [more]
gi|544216080|ref|XP_005538185.1|3.290e-3445.77hypothetical protein, conserved [Cyanidioschyzon m... [more]
gi|1189391718|gb|OSX78645.1|2.336e-3348.20hypothetical protein BU14_0104s0019 [Porphyra umbi... [more]
gi|397645344|gb|EJK76787.1|2.494e-2937.44hypothetical protein THAOC_01435 [Thalassiosira oc... [more]
gi|1049311847|gb|OCQ90122.1|5.819e-2940.91hypothetical protein BCD64_19545 [Nostoc sp. MBR 2... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5746rna5746Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications