rna5740, rna5740 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5740
Unique Name	rna5740
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2197
Alignment location	CM002466.1:719409..722199 +

Link to JBrowse

Properties


Property Name	Value
Product	Pentatricopeptide repeat containing protein
Orig transcript id	gnl\|cribi\|Naga_100086g25.3851.mrna
Orig protein id	gnl\|cribi\|Naga_100086g25.3851
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:719409..722199 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100086g25	gene5545	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5740	rna5740-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24951.1	cds5725	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:719409..722199+
coding sequence from alignment at CM002466.1:719409..722199+

mRNA sequence

>rna5740 ID=rna5740|Name=rna5740|organism=Nannochloropsis gaditana|type=mRNA|length=2197bp
ATCTATTGAGATAATTTTATTCAAAAATGTAGATGGCAAGGAAATCGCCC
TCCTTTTCAACATCCTCTGAGTGCAGCGGGCTACGATCCGAGGCTCATGG
TACGTCCTTGCTGTTTGTCGGTTTTGTTATTTTTGGGTAGAAAGCATTTC
CAAGATGAGATCCTTCAGTGACGAGCAAAGGATAACGTATTTTGAATCCC
CTAGCCTTCGCATTGTTGCGACTTTCAGATGCATCCATGTTTCCAAGCCG
ACGGCCAGGGAGAGGCCCGGGGGCAAGAGGGAGCGCAGCTTGAAGCAAGT
GAGGCCCATCGTCAGGCCTCGGGGTCCAAAAGATGTGCCGCCTCCCTGTC
GTGCCCGTGCCCACAGCTGCGAAAGGCTTGCTTGGCCACCTCTTTCTCAT
TCCATTCACTTTGGTGTGACGGGGTCAAATTCTAGCGAGAGCCTTATTGT
GGGCATGCGATGTTCCCTTTAATCGCTGCCAGAAGAACTTCCGGGACGTG
GGCTCATAAAATACTTCCAACACACTTAAGCTCATAAAATACTTCCAACA
CACTTAGAGAGGAGATCAATCGGAAAAGAAGGGATAATGGGAATTGTTTT
CTCCATGGGTACATCAGCTGCCAGTGCCTTGGCCTCATGCTGCGTCGGAA
GTGCGGCTTCTTGCGTCTGCGCAGGCTTAAAGCAATGCCTACCGAGTGGG
TACAGTGCAGCGAAAGTATACGCCCTGCTCCTCTTTTTCGCGTCTGTTGT
GGCCGCATTGATTCTGCGCACCACAGAGCCAGCCATAAATGCTGACTATT
TTACTGTGCGTTGCACGGGGGAGTTCAAGGACCGGTGCTACGGTTTTCAG
GCCGTATACCGGCTGTCTTTCGTCGATTTTTTCTTTTTTCTAGCGTTGGC
CTTGGGAAGTAAGTTTGTCGTGGGTGTCCATACTCATGCCTGGGGCCTGA
AATATCTAGTTTTTTTGGGCTTCCTCATCGGCATGTTCTTCGTGGACAAC
AAGGTCTTCGCCGGCTACGTGCATTTGGCCCGCGTTGCCTCCTTAGTGTA
CTTGGTCGCGCAAGTTGTGACATTGATCAATTTCTCCTACAACATGCACA
CGACATTGATGGGCAAGGTGGAAGCGGCGGAAAGTAGTGGGGAGACGAAC
GGTGCTAAACTTTACAAAGTCATCTACCTGTGCCTTTCCTTGTTCTGCTT
GGCAGGGGGGCTGACGGGTATTGGGTTGCTCTACGCGTTCTACGCGCACT
GCCGCCTCTCCCAGTTCTGGATCACCCTGACCTTGCTGGTCAGCCTCGCC
TGCCTTTTCTCCTCCTTGCTGGATCGGATCGGCATGGGCCTGCTCACGCC
CTCCGTTCTCTTCCTCTACTTTGATTACCAATGCTGGTCCGCCATCCTCT
CCAACCCGGATCCCGCCTGCAATAAAACCGCAAGCCTAGCATCCTCCAAA
GCCAAATCTTGGAACACGGCCGTGGCCTTGGTTTTCCTGGCCGTTTCCTT
GACGTATACGGGATGGAGTACGTACAGGTCGATAGTGGGGACGGAACTGC
AACCCGAGCAGGTGGCTGCTGCAGCCGCAGGAGGGAGCGGAGCGGGGGCG
GGGGGGGAAAACCTTACGAAGATTTTGACAGGAGAAGGCGATACTACCAC
CACTGCGACGCCAGTAATTGTGACAGAAGAGGGGGATGAGGAGAAAGGGG
GCGCGGCAGTACCGACGTTGACTGCGGCAGATCAAGCAGAGGCGTCCTTA
ATATGGATATTCCATCTGTTGTTAGCCTTGGGAGGCGCTTACATGGCTAT
GGCCATAACGAACTGGGGAAACGCAAATGGAATTCCAGACGGAGTCGGAG
ATGGAGATTCGACAGTGGGTCGTGAGAGTATGTGGTTGAAGATTGTCAGT
CAGTGGATCACAATGCTGTTGTATGCGTGGAGCCTTTGGGCGCCGGTTTG
CCGGGGGGAGGGGGAGGAGTACTAGAAAAGGAAACATATAGCATCACGGA
GTGTGCTGCTCACAACTTTTGTTGATGATTTGTTTTTGTTTTCTATCCCT
GTTAAGTGCCATTGGACTTCAAACACAAGACGAAAGGGCCTGTTGAGGGA
AAAGGGTGCAGTACAGGAAAGATAACATTGAAAAACTTCTTTAATAGAGC
AATCGATGTCAGAACTGTTGGGACGGTAGATCGTTAGAAAATAAGCA

protein sequence of rna5740

>rna5740-protein ID=rna5740-protein|Name=rna5740|organism=Nannochloropsis gaditana|type=polypeptide|length=794bp
MRIATIPSLHRHWWPVTSTVAFIARCSSSSIPAPAATPPGPLSTFTEPSH
PQHNTEDEFQCQSSRWGEERRSFMVEIPGSKCRDTEANSSNYLIPSKREW
QKIRESCSQSDFEQAFELLQRSKAGAREYNYVIYACLAARQLDFLEDVAL
EGVRQARTRRQGSRNDQNSLEDDTGCRTERSLPMGVRLDGLVHRLLLAHI
RNGCFERAWRLYRRLAAPVSNTLSTEPWARDNAANTALSQRSQPNGLPLA
GASSISPAPPPGSLSALLPPTLKTFSILLRACTRWRKGVEAKSLVSDADE
YRVDLTRADFEQAISACGSAGDSRNVEWIMKKMTERGMPVSREAQQSLLN
AHFIRGESRAGEALLESMTKAAGQASLRTQDYVSAGLFNKAFTAFDAVSV
PVRKQEDYVAMLTAVSALKDAPRMVNVLEELERGLREGRAGLTVGPTEFG
LACRIFRKAEGQELLEETRQEKGRVGARRRRMGAEEMRCLDVLARLGDRS
GIPFLNKTYVEALIETGREEEARKRLDRWLAKRMERRGRHVVSYASQIGA
LGALGLWPVAHYLYDEMRFLAPHGSWEREIQSFRSLLGVYETEEKRAARC
PGAARGKIVDALHGLALATYKEGIRRGHLNHWHPSREKVMDLHRYSLYLA
VLAVEVVLMDMASESSHAENKMGPRNSHELAAHALSIPAQDLWVITGRGK
HNSSRLINATSSRPNAHGPSYTAGPMHVDETDERQRNMETLSHMRLRDKL
ARALAMQHGLLTEIDLRRLRSDNNCGRLCIRKEAIQTWIKAHNK

mRNA from alignment at CM002466.1:719409..722199+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5740 ID=rna5740|Name=rna5740|organism=Nannochloropsis gaditana|type=mRNA|length=2791bp|location=Sequence derived from alignment at CM002466.1:719409..722199+ (Nannochloropsis gaditana)
ACGATGGGCCTCACTTGCTTCAAGCTgcgctccctcttgcccccgggcct
ctccctggccgtcgGCTTGGAAACATGGATGCATCTGAAAGTCGCAACAA
TGCGAAGGCTAGGGGATTCAAAATACGTTATCCTTTGCTCGTCACTGAAG
GATCTCATCTTGGAAATGCTTTCTACCCAAAAATAACAAAACCGACAAAC
AGCAAGGACGTACCATGAGCCTCGGATCGTAGCCCGCTGCACTCAGAGGA
TgttgaaaaggagggcgattTCCTTGCCATCTACATTTTTGAATAAAATT
ATCTCAATAGATCTATGCGGATAGCTACTATCCCTTCCTTGCACCGGCAT
TGGTGGCCTGTCACTTCAACGGTAGCATTCATTGCGAGATGTTCGTCTTC
GTCTATTCCAGCCCCTGCCGCGACTCCTCCGGGGCCACTTTCCACTTTCA
CAGAGCCATCCCACCCTCAACACAACACGGAGGATGAATTCCAATGCCAG
TCATCgcggtggggggaagaaaggcgtTCATTTATGGTTGAAATTCCGGG
CAGCAAATGTAGGGATACAGAGGCAAACTCCTCCAATTATCTTATACCCT
CAAAACGTGAATGGCAGAAAATCCGGGAATCATGTTCTCAATCAGATTTT
GAACAGGCTTTTGAACTTCTGCAGCGCTCAAAAGCTGGAGCCCGCGAGTA
TAACTATGTAATTTACGCTTGCCTGGCGGCGAGGCAACTTGACTTCTTGG
AGGACGTAGCCTTGGAAGGGGTACGGCAGGCACGGACGCGTCGACAAGGA
AGCCGGAATGACCAAAACTCTCTGGAAGACGATACAGGGTGTCGAACAGA
GAGATCCTTGCCGATGGGCGTGCGTCTTGACGGTTTGGTCCACCGACTGT
TGCTCGCACATATACGAAACGGGTGTTTCGAACGGGCTTGGCGACTCTAT
CGTCGGCTGGCAGCTCCTGTATCCAACACATTATCGACAGAGCCCTGGGC
CCGCGACAATGCTGCAAACACCGCGCTCAGTCAGCGGTCTCAGCCCAATG
GTCTGCCCCTGGCTGGCGCGAGTAGCATCTCTcctgcgcccccccccggc
tcGCTATCTGCTCTGCTTCCGCCCACCCTTAAgaccttttccatcctcct
tcgagCCTGTACGCGCTGGAGAAAAGGTGTGGAGGCCAAATCCCTCGTGA
GCGACGCCGACGAGTACCGCGTCGACTTGACGAGAGCCGATTTTGAGCAA
GCGATCTCGGCCTGTGGCAGCGCAGGGGACTCCCGCAATGTGGAATGGAT
CATGAAGAAAATGACGGAGAGGGGCATGCCGGTATCCCGGGAGGCCCAGC
AATCCCTCCTGAACGCCCACTTCATCCGGGGCGAGAGTCGGGCGGGCGAG
GCCCTCTTGGAAAGCATGACCAAGGCCGCAGGACAAGCCAGTCTCCGAAC
TCAGGACTACGTCAGCGCCGGGCTCTTCAACAAGGCCTTCACAGCTTTTG
ACGCGGTGTCTGTCCCAGTTCGGAAGCAAGAAGACTACGTGGCTATGCTC
ACGGCGGTGAGTGCCCTCAAAGACGCGCCGCGGATGGTGAacgtgctgga
ggagttggaaAGAGGCCTGCGAGAGGGACGGGCAGGCCTGACCGTGGGAC
CGACTGAATTTGGACTGGCGTGCCGCATATTCCGAAAAGCAGAGGGCCAG
GAGCTGCTTGAGGAGACACggcaagagaaagggcgCGTaggcgcgaggag
gaggaggatgggtgCAGAGGAGATGCGCTGCCTGGACGTCTTGGCCCGGC
TTGGGGATCGATCTGGCATCCCGTTTTTGAACAAGACATACGTTGAAGCA
TTGATAGAGACtggacgagaagaggaagcacgGAAGCGGTTGGACCGGTG
GCTGGCAAAGCGGATGGAGCGAAGAGGGCGACATGTGGTTTCGTATGCCT
CCCAAATCGGGGCTCTGGGGGCCTTGGGTCTGTGGCCGGTGGCCCATTAC
TTGTACGATGAGATGCGTTTCTTGGCTCCCCACGGGAGTTGGGAGAGAGA
AATCCAATCATTCCGATCCCTTTTGGGGGTGTATGAAACGGAGGAAAAAC
GGGCGGCTCGGTGTCCGGGAGCGGCCCGCGGAAAGATCGTGGACGCCCTC
CACGGCTTGGCACTTGCCACTTACAAGGAAGGGATTCGCCGAGGCCATTT
GAACCATTGGCACCCGTCTCGCGAAAAGGTCATGGACCTGCACCGTTACT
CCCTCTACCTCGCCGTCCTGGCGGTGGAGGTAGTATTAATGGACATGGCG
AGCGAAAGCTCGCACGCTGAGAACAAGATGGGGCCGCGGAATTCGCATGA
ACTGGCTGCCCACGCGCTTTCTATTCCTGCACAAGACTTGTGGGTCATCA
CAGGTAGGGGGAAACATAACTCGTCGCGCCTGATAAACGCCACTTCGTCT
CGTCCAAATGCCCATGGTCCGTCGTACACGGCGGGCCCGATGCACGTCGA
TGAGACGGACGAGCGACAAAGGAATATGGAAACTCTAAGTCACATGAGAT
TGCGCGACAAGCTAGCGCGAGCTTTGGCGATGCAGCACGGGCTCCTGACT
GAGATTGACCTCAGACGGTTGCGTTCCGACAACAATTGTGGACGCCTATG
CATTCGTAAGGAAGCAATTCAGACTTGGATTAAAGCCCACAACAAATAGG
AAAATGTAATTTCAGAAAATATTGTGGGAATGTCGAATTTAATTTTCTAA
TGCCTTTAAATTGGAAACAAAACAGTGAACGTACGCATATA

Coding sequence (CDS) from alignment at CM002466.1:719409..722199+

>rna5740 ID=rna5740|Name=rna5740|organism=Nannochloropsis gaditana|type=CDS|length=2385bp|location=Sequence derived from alignment at CM002466.1:719409..722199+ (Nannochloropsis gaditana)
ATGCGGATAGCTACTATCCCTTCCTTGCACCGGCATTGGTGGCCTGTCAC
TTCAACGGTAGCATTCATTGCGAGATGTTCGTCTTCGTCTATTCCAGCCC
CTGCCGCGACTCCTCCGGGGCCACTTTCCACTTTCACAGAGCCATCCCAC
CCTCAACACAACACGGAGGATGAATTCCAATGCCAGTCATCgcggtgggg
ggaagaaaggcgtTCATTTATGGTTGAAATTCCGGGCAGCAAATGTAGGG
ATACAGAGGCAAACTCCTCCAATTATCTTATACCCTCAAAACGTGAATGG
CAGAAAATCCGGGAATCATGTTCTCAATCAGATTTTGAACAGGCTTTTGA
ACTTCTGCAGCGCTCAAAAGCTGGAGCCCGCGAGTATAACTATGTAATTT
ACGCTTGCCTGGCGGCGAGGCAACTTGACTTCTTGGAGGACGTAGCCTTG
GAAGGGGTACGGCAGGCACGGACGCGTCGACAAGGAAGCCGGAATGACCA
AAACTCTCTGGAAGACGATACAGGGTGTCGAACAGAGAGATCCTTGCCGA
TGGGCGTGCGTCTTGACGGTTTGGTCCACCGACTGTTGCTCGCACATATA
CGAAACGGGTGTTTCGAACGGGCTTGGCGACTCTATCGTCGGCTGGCAGC
TCCTGTATCCAACACATTATCGACAGAGCCCTGGGCCCGCGACAATGCTG
CAAACACCGCGCTCAGTCAGCGGTCTCAGCCCAATGGTCTGCCCCTGGCT
GGCGCGAGTAGCATCTCTcctgcgcccccccccggctcGCTATCTGCTCT
GCTTCCGCCCACCCTTAAgaccttttccatcctccttcgagCCTGTACGC
GCTGGAGAAAAGGTGTGGAGGCCAAATCCCTCGTGAGCGACGCCGACGAG
TACCGCGTCGACTTGACGAGAGCCGATTTTGAGCAAGCGATCTCGGCCTG
TGGCAGCGCAGGGGACTCCCGCAATGTGGAATGGATCATGAAGAAAATGA
CGGAGAGGGGCATGCCGGTATCCCGGGAGGCCCAGCAATCCCTCCTGAAC
GCCCACTTCATCCGGGGCGAGAGTCGGGCGGGCGAGGCCCTCTTGGAAAG
CATGACCAAGGCCGCAGGACAAGCCAGTCTCCGAACTCAGGACTACGTCA
GCGCCGGGCTCTTCAACAAGGCCTTCACAGCTTTTGACGCGGTGTCTGTC
CCAGTTCGGAAGCAAGAAGACTACGTGGCTATGCTCACGGCGGTGAGTGC
CCTCAAAGACGCGCCGCGGATGGTGAacgtgctggaggagttggaaAGAG
GCCTGCGAGAGGGACGGGCAGGCCTGACCGTGGGACCGACTGAATTTGGA
CTGGCGTGCCGCATATTCCGAAAAGCAGAGGGCCAGGAGCTGCTTGAGGA
GACACggcaagagaaagggcgCGTaggcgcgaggaggaggaggatgggtg
CAGAGGAGATGCGCTGCCTGGACGTCTTGGCCCGGCTTGGGGATCGATCT
GGCATCCCGTTTTTGAACAAGACATACGTTGAAGCATTGATAGAGACtgg
acgagaagaggaagcacgGAAGCGGTTGGACCGGTGGCTGGCAAAGCGGA
TGGAGCGAAGAGGGCGACATGTGGTTTCGTATGCCTCCCAAATCGGGGCT
CTGGGGGCCTTGGGTCTGTGGCCGGTGGCCCATTACTTGTACGATGAGAT
GCGTTTCTTGGCTCCCCACGGGAGTTGGGAGAGAGAAATCCAATCATTCC
GATCCCTTTTGGGGGTGTATGAAACGGAGGAAAAACGGGCGGCTCGGTGT
CCGGGAGCGGCCCGCGGAAAGATCGTGGACGCCCTCCACGGCTTGGCACT
TGCCACTTACAAGGAAGGGATTCGCCGAGGCCATTTGAACCATTGGCACC
CGTCTCGCGAAAAGGTCATGGACCTGCACCGTTACTCCCTCTACCTCGCC
GTCCTGGCGGTGGAGGTAGTATTAATGGACATGGCGAGCGAAAGCTCGCA
CGCTGAGAACAAGATGGGGCCGCGGAATTCGCATGAACTGGCTGCCCACG
CGCTTTCTATTCCTGCACAAGACTTGTGGGTCATCACAGGTAGGGGGAAA
CATAACTCGTCGCGCCTGATAAACGCCACTTCGTCTCGTCCAAATGCCCA
TGGTCCGTCGTACACGGCGGGCCCGATGCACGTCGATGAGACGGACGAGC
GACAAAGGAATATGGAAACTCTAAGTCACATGAGATTGCGCGACAAGCTA
GCGCGAGCTTTGGCGATGCAGCACGGGCTCCTGACTGAGATTGACCTCAG
ACGGTTGCGTTCCGACAACAATTGTGGACGCCTATGCATTCGTAAGGAAG
CAATTCAGACTTGGATTAAAGCCCACAACAAATAG

Synonyms

Publications