EWM24951.1, cds5725 (CDS) Nannochloropsis gaditana

Overview
NameEWM24951.1
Unique Namecds5725
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:719723..722107 +

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Properties
Property NameValue
Protein idEWM24951.1
ProductPentatricopeptide repeat containing protein
Orig transcript idgnl|cribi|Naga_100086g25.3851.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:719723..722107 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
Homology
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BLAST of EWM24951.1 vs. NCBI_GenBank
Match: gi|585106581|gb|EWM24951.1| (Pentatricopeptide repeat containing protein [Nannochloropsis gaditana])

HSP 1 Score: 1634.77 bits (4232), Expect = 0.000e+0
Identity = 794/794 (100.00%), Postives = 794/794 (100.00%), Query Frame = 0 
Query:    1 MRIATIPSLHRHWWPVTSTVAFIARCSSSSIPAPAATPPGPLSTFTEPSHPQHNTEDEFQCQSSRWGEERRSFMVEIPGSKCRDTEANSSNYLIPSKREWQKIRESCSQSDFEQAFELLQRSKAGAREYNYVIYACLAARQLDFLEDVALEGVRQARTRRQGSRNDQNSLEDDTGCRTERSLPMGVRLDGLVHRLLLAHIRNGCFERAWRLYRRLAAPVSNTLSTEPWARDNAANTALSQRSQPNGLPLAGASSISPAPPPGSLSALLPPTLKTFSILLRACTRWRKGVEAKSLVSDADEYRVDLTRADFEQAISACGSAGDSRNVEWIMKKMTERGMPVSREAQQSLLNAHFIRGESRAGEALLESMTKAAGQASLRTQDYVSAGLFNKAFTAFDAVSVPVRKQEDYVAMLTAVSALKDAPRMVNVLEELERGLREGRAGLTVGPTEFGLACRIFRKAEGQELLEETRQEKGRVGARRRRMGAEEMRCLDVLARLGDRSGIPFLNKTYVEALIETGREEEARKRLDRWLAKRMERRGRHVVSYASQIGALGALGLWPVAHYLYDEMRFLAPHGSWEREIQSFRSLLGVYETEEKRAARCPGAARGKIVDALHGLALATYKEGIRRGHLNHWHPSREKVMDLHRYSLYLAVLAVEVVLMDMASESSHAENKMGPRNSHELAAHALSIPAQDLWVITGRGKHNSSRLINATSSRPNAHGPSYTAGPMHVDETDERQRNMETLSHMRLRDKLARALAMQHGLLTEIDLRRLRSDNNCGRLCIRKEAIQTWIKAHNK 794
            MRIATIPSLHRHWWPVTSTVAFIARCSSSSIPAPAATPPGPLSTFTEPSHPQHNTEDEFQCQSSRWGEERRSFMVEIPGSKCRDTEANSSNYLIPSKREWQKIRESCSQSDFEQAFELLQRSKAGAREYNYVIYACLAARQLDFLEDVALEGVRQARTRRQGSRNDQNSLEDDTGCRTERSLPMGVRLDGLVHRLLLAHIRNGCFERAWRLYRRLAAPVSNTLSTEPWARDNAANTALSQRSQPNGLPLAGASSISPAPPPGSLSALLPPTLKTFSILLRACTRWRKGVEAKSLVSDADEYRVDLTRADFEQAISACGSAGDSRNVEWIMKKMTERGMPVSREAQQSLLNAHFIRGESRAGEALLESMTKAAGQASLRTQDYVSAGLFNKAFTAFDAVSVPVRKQEDYVAMLTAVSALKDAPRMVNVLEELERGLREGRAGLTVGPTEFGLACRIFRKAEGQELLEETRQEKGRVGARRRRMGAEEMRCLDVLARLGDRSGIPFLNKTYVEALIETGREEEARKRLDRWLAKRMERRGRHVVSYASQIGALGALGLWPVAHYLYDEMRFLAPHGSWEREIQSFRSLLGVYETEEKRAARCPGAARGKIVDALHGLALATYKEGIRRGHLNHWHPSREKVMDLHRYSLYLAVLAVEVVLMDMASESSHAENKMGPRNSHELAAHALSIPAQDLWVITGRGKHNSSRLINATSSRPNAHGPSYTAGPMHVDETDERQRNMETLSHMRLRDKLARALAMQHGLLTEIDLRRLRSDNNCGRLCIRKEAIQTWIKAHNK
Sbjct:    1 MRIATIPSLHRHWWPVTSTVAFIARCSSSSIPAPAATPPGPLSTFTEPSHPQHNTEDEFQCQSSRWGEERRSFMVEIPGSKCRDTEANSSNYLIPSKREWQKIRESCSQSDFEQAFELLQRSKAGAREYNYVIYACLAARQLDFLEDVALEGVRQARTRRQGSRNDQNSLEDDTGCRTERSLPMGVRLDGLVHRLLLAHIRNGCFERAWRLYRRLAAPVSNTLSTEPWARDNAANTALSQRSQPNGLPLAGASSISPAPPPGSLSALLPPTLKTFSILLRACTRWRKGVEAKSLVSDADEYRVDLTRADFEQAISACGSAGDSRNVEWIMKKMTERGMPVSREAQQSLLNAHFIRGESRAGEALLESMTKAAGQASLRTQDYVSAGLFNKAFTAFDAVSVPVRKQEDYVAMLTAVSALKDAPRMVNVLEELERGLREGRAGLTVGPTEFGLACRIFRKAEGQELLEETRQEKGRVGARRRRMGAEEMRCLDVLARLGDRSGIPFLNKTYVEALIETGREEEARKRLDRWLAKRMERRGRHVVSYASQIGALGALGLWPVAHYLYDEMRFLAPHGSWEREIQSFRSLLGVYETEEKRAARCPGAARGKIVDALHGLALATYKEGIRRGHLNHWHPSREKVMDLHRYSLYLAVLAVEVVLMDMASESSHAENKMGPRNSHELAAHALSIPAQDLWVITGRGKHNSSRLINATSSRPNAHGPSYTAGPMHVDETDERQRNMETLSHMRLRDKLARALAMQHGLLTEIDLRRLRSDNNCGRLCIRKEAIQTWIKAHNK 794
The following BLAST results are available for this feature:
BLAST of EWM24951.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585106581|gb|EWM24951.1|0.000e+0100.00Pentatricopeptide repeat containing protein [Nanno... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5740rna5740Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications