rna5738, rna5738 (mRNA) Nannochloropsis gaditana

Overview
Namerna5738
Unique Namerna5738
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length453
Alignment locationCM002466.1:716198..716763 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100086g27.3845.mrna
Orig protein idgnl|cribi|Naga_100086g27.3845
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:716198..716763 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100086g27gene5543Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5738rna5738-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24945.1cds5723Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5738 ID=rna5738|Name=rna5738|organism=Nannochloropsis gaditana|type=mRNA|length=453bp
ATGGCTTCCCTCATACGACTTTTGAACCGAAGAGTGACACTTTGCGAAAG
CCCCTACTCGTTTGTGCCGTGGACACCTTCCTCCTACTATTCTCATCGTC
CCGTAGGGCTTTTGTTGCCAAGTTCATGCCAATGGACGGCTTTTCCTCGC
TCCCTCAGCTCGTTGAGGTTTGAATCGAGGGTATTGCAATCCTTCCTATC
TGCCATGACCGTAGACTTTGAAAAAGCTTTTATCAAGAGAGGGAATGTGG
CCAGGCTCGGAAACTTTTTCTTCCCCACTCCATGCAGAAGTCCTTGCAAG
TTTCCCCCCCTGCGCTTCGCAGCTTATCAACCAGAATTGTCTGACTGGGG
GCAGTTTGAGCGTAAGTGGTCGGAGAGGGAGTGGCACTGGCCTTTGTTCT
TCTTTTCTTCTTATGTAGGCTCTGAAACTGGGACACGGCAGCGGTTGCTT
TAG
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protein sequence of rna5738

>rna5738-protein ID=rna5738-protein|Name=rna5738|organism=Nannochloropsis gaditana|type=polypeptide|length=157bp
MTSICLCGVPHLSNGCQAFLLNHPHYLGGDMLHLFWDGTPLFCLCHLACN
SFPATASRPTSYLFKPPMHMVPSLAYSQHTFTSVISIITIIVTAIIPPTS
KHNSSTFTFCFTTPRRNMVCTHLPPSPSHILFFYRWRAFIVKLVSVNALC
SRIHLSR
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mRNA from alignment at CM002466.1:716198..716763-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5738 ID=rna5738|Name=rna5738|organism=Nannochloropsis gaditana|type=mRNA|length=566bp|location=Sequence derived from alignment at CM002466.1:716198..716763- (Nannochloropsis gaditana)
ATGACATCGATTTGCTTGTGCGGTGTACCTCATCTTAGCAATGGTTGCCA
GGCCTTTCTACTGAACCACCCCCACTATCTAGGAGGTGACATGTCCAAGA
TTCTCATATTGCTATATTCGATCGCTTCATTGGGAGGCTTCATCTCTTTT
GGGACGGCACGCCACTTTTTTGTCTGTGTCATCTAGCCTGCAATTCGTTC
CCTGCCACTGCTTCACGACCCACTTCATACCTCTTCAAACCTCCTATGCA
CATGGTCCCCTCGCTTGCGTATTCACAACATACCTTCACAAGTGTCATCT
CAATCATCACCATCATCGTCACCGCCATCATCCCTCCAACCTGTCTGCAT
ACCTGCATTTGATACGTCCTGATCCTCGCCTCTTTTTTAGCCAAGCATAA
CTCCTCCACTTTCACTTTTTGCTTCACCACACCGCGGCGAAATATGGTAT
GCACGCATCTTCCTCCCTCCCCTTCGCACATCCTGTTTTTTTACAGATGG
CGTGCTTTCATTGTGAAGCTGGTTAGCGTCAACGCTCTGTGTTCACGTAT
CCATCTTTCGCGGTAA
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Coding sequence (CDS) from alignment at CM002466.1:716198..716763-

>rna5738 ID=rna5738|Name=rna5738|organism=Nannochloropsis gaditana|type=CDS|length=1422bp|location=Sequence derived from alignment at CM002466.1:716198..716763- (Nannochloropsis gaditana)
CCAAGCATAACTCCTCCACTTTCACTTTTTGCTTCACCACACCGCGGCGA
AATATGGTATGCACGCATCTTCCTCCCTCCCCTTCGCACATCCTGTTTTT
TTACAGATGGCGTGCTTTCATTGTGAAGCTGGTTAGCGTCAACGCTCTGT
GTTCACGTATCCATCTTTCGCGGTAAGCTTCATCTCTTTTGGGACGGCAC
GCCACTTTTTTGTCTGTGTCATCTAGCCTGCAATTCGTTCCCTGCCACTG
CTTCACGACCCACTTCATACCTCTTCAAACCTCCTATGCACATGGTCCCC
TCGCTTGCGTATTCACAACATACCTTCACAAGTGTCATCTCAATCATCAC
CATCATCGTCACCGCCATCATCCCTCCAACCTATGACATCGATTTGCTTG
TGCGGTGTACCTCATCTTAGCAATGGTTGCCAGGCCTTTCTACTGAACCA
CCCCCACTATCTAGGAGGTGACATCCAAGCATAACTCCTCCACTTTCACT
TTTTGCTTCACCACACCGCGGCGAAATATGGTATGCACGCATCTTCCTCC
CTCCCCTTCGCACATCCTGTTTTTTTACAGATGGCGTGCTTTCATTGTGA
AGCTGGTTAGCGTCAACGCTCTGTGTTCACGTATCCATCTTTCGCGGTAA
GCTTCATCTCTTTTGGGACGGCACGCCACTTTTTTGTCTGTGTCATCTAG
CCTGCAATTCGTTCCCTGCCACTGCTTCACGACCCACTTCATACCTCTTC
AAACCTCCTATGCACATGGTCCCCTCGCTTGCGTATTCACAACATACCTT
CACAAGTGTCATCTCAATCATCACCATCATCGTCACCGCCATCATCCCTC
CAACCTATGACATCGATTTGCTTGTGCGGTGTACCTCATCTTAGCAATGG
TTGCCAGGCCTTTCTACTGAACCACCCCCACTATCTAGGAGGTGACATCC
AAGCATAACTCCTCCACTTTCACTTTTTGCTTCACCACACCGCGGCGAAA
TATGGTATGCACGCATCTTCCTCCCTCCCCTTCGCACATCCTGTTTTTTT
ACAGATGGCGTGCTTTCATTGTGAAGCTGGTTAGCGTCAACGCTCTGTGT
TCACGTATCCATCTTTCGCGGTAAGCTTCATCTCTTTTGGGACGGCACGC
CACTTTTTTGTCTGTGTCATCTAGCCTGCAATTCGTTCCCTGCCACTGCT
TCACGACCCACTTCATACCTCTTCAAACCTCCTATGCACATGGTCCCCTC
GCTTGCGTATTCACAACATACCTTCACAAGTGTCATCTCAATCATCACCA
TCATCGTCACCGCCATCATCCCTCCAACCTATGACATCGATTTGCTTGTG
CGGTGTACCTCATCTTAGCAATGGTTGCCAGGCCTTTCTACTGAACCACC
CCCACTATCTAGGAGGTGACAT
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Synonyms
Publications