rna573, rna573 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna573
Unique Name	rna573
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1209
Alignment location	CM002455.1:1424405..1426111 +

Link to JBrowse

Properties


Property Name	Value
Product	dihydrolipoamide s-acetyltransferase
Orig transcript id	gnl\|cribi\|Naga_100258g1.3332.mrna
Orig protein id	gnl\|cribi\|Naga_100258g1.3332
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:1424405..1426111 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100258g1	gene551	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna573	rna573-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30104.1	cds573	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:1424405..1426111+
coding sequence from alignment at CM002455.1:1424405..1426111+

mRNA sequence

>rna573 ID=rna573|Name=rna573|organism=Nannochloropsis gaditana|type=mRNA|length=1209bp
ATGCGGCGTGATCTTCACACTCCAATCGCCTCAAAGAAGGTGCAGCAAAT
GCATTCACATGAGCGCGAGATGGAAAAAGGAAGGATCCTTCGAATAGATG
AAGCGTCTGGTTCATCTGAAGCCGAAAAGATGAATCTGCTGGGGGAACTT
CCCATTGATGACCCTGACACGCCCAAGAAGACTTCTGCCCCGACGATGTC
GTTGCTGTCCACTCTTGACACCCTTCCTCGCATCTGGAAGTTCTGCCTGT
TGGTTGTGGGACTTTTCTTCTTTTTTGGCGTGCACAACCTCTTGCAAGAG
CAAATCATGCACTTCCCCGGCTTCACGTTCGGGTGGTCGTTGGGTTTCTT
AGAGGTGTTGGGCGTGACCGTCTTCTCCTACTGGGAGCGGCGATGGTACA
AGGAAGCTGGCGTCCGGCGAGGTAGTTGGCGGAGCTATGTGGGCACAACG
CTTTGCCTGATGGGGAGCTCATCCCTTGCAAACAAGGCGCTAGACTACAT
TAACTACCCCACGAAGGTCGTATTCCGCTCCTGCAAGCTCATCCCGACCA
TGGTTATCTCCAGCGTCATGAATCAGAAGCCGTTCAAGGGCGTCGAGTAT
GCCGCCGCCGTGGCTGTTTGTGTCGGGCTTATCCTCTTTGCCTTCGCAGA
TGTCCGAGTGGCGCCATCTTTTTCGCCCTGGGGCATCACTCTCGTTTCCC
TCTCTGTGGTCTGCGACGCCGTGCTGCCCAATTTGCAAGAGCGGCTCTTT
GCGGAGGGATCGTCCCGCCTGGAAGTCACCTTCTACTCCAACATATTGAC
GCTGGGCCTCATGTCCGTCTCCACACTGCTCTCGGGTGACCTTCTTGGAG
CCCTCGCCTACGCCCAAGCCGACCACAAGGCCGCCGTCCTCCTCCTTGTC
TATACCTTGCTCGCCTATGTCGCCATATCCCTTCACATGGCTTTGGTCAA
ATCGTTCGGATCGGTGGCTGCAGTCCTGGTGGGGAACAGCCGGAAAACCA
TGACGATCTGCCTCTCCTTCCTCTTGTTCCCTAAACCCTTCTCGAATTTA
TACGTGGTGGGCGGCATGCTGGTCTTGGCAGGACTGACCGTCTCCGTATA
CGTGAAAAACATGGACAAAAAGAAGGGTGCTGACGATGCGGTCTTAAATT
GTAAAGGGGAAGTGGTTGGTCCTACGGCAGTGGGCAACGGAGGGTTGATT
CAGCAATAG

protein sequence of rna573

>rna573-protein ID=rna573-protein|Name=rna573|organism=Nannochloropsis gaditana|type=polypeptide|length=130bp
MLAFASRRLVVAGAVTRAGTRGALPRASRPKYLASTMERATFASLPEHTV
VGMPALSPTMTHGNVAVWHKKEGDEIGPGDALCDIETDKATMAFEAQDEG
AVAKILVEEGTSDIAVGSPIMVIPAPPPLL

mRNA from alignment at CM002455.1:1424405..1426111+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna573 ID=rna573|Name=rna573|organism=Nannochloropsis gaditana|type=mRNA|length=1707bp|location=Sequence derived from alignment at CM002455.1:1424405..1426111+ (Nannochloropsis gaditana)
ATGCTGGCATTCGCTTCGAGACGACTGGTAGTCGCCGGTGCTGTCACCCG
GGCAGGTATGTAACAAACGTTGAATCGGTGGTATCTGAGTCTTGAGCGTA
TGTTTATATAGCTTCATTGCTTGTATTTCACGTACCATGATACTGTACTA
TATGTATCATTAAACGTGAAACGGAGATGTGGCCAGCGCGAGCCTGTGCC
ACATCACATTTGCCCCGCGGTGCTCTCACTTATCTTTCTCGCAATTAATC
TCAATCTTGGCGCCGCGACATTCAGGCACCCGAGGGGCGCTGCCACGCGC
ATCAAGGCCGAAATATCTCGCATCCACGATGGAAAGAGCCACGTTTGCGT
CCCTTCCTGAGCATACTGTGGTGGGAATGCCAGGTACGTGCTGTGAAACG
GGGCACGTCGTCGGGACGCCGGCCTGCCCGTCGCGTGACTCGGCAGCCTC
CACCTATTTCTGCCGCATTCTCCCGCAGAAATGGGAATGGGGTCGGAGAA
AGGGTTCGAGTGGGGGATGTACTTCAAGATGCTCAAAGTTGGTAGCCGTT
TTTTTCTTCATGGACCTTTGTGAGGTCTTATTTGTGCTGTACTCGTCAAT
CAACCGTTGGCGGTCAGAGCCACGCTGTCCTGCGATGGATCCAGGCGGTC
CAATACTGGATCTAGATTTTAAAAGTGTTCTGAATCCAATTCTCTCATGT
CCGACACATCCAACCATGTTCAGCACTTTCGCCCACGATGACCCACGGCA
ATGTGGCGGTGTGGCACAAGAAGGTtggtaggaaggaaagccacggggag
ggaggtggaaaaccGGGGGGAGTCCCTCGGCGAAAAGCGTGAGCGTGGGT
GACGAAAATGGACggttggagggaaaggatggacCGGACGTTTCTggggc
ctcggaggaggaagcccggGTAGGGTTacggttagggttagggttggAGA
cttggggggaggacgcggcggtggtcaggggtggggggggggggaagtat
CAACATGAAGGTCCACTTTCTCGCTGGCTCACATTTCATCTGCACTTTTt
ttgctccctttcttcccaggAAGGCGATGAAATCGGGCCGGGCGATGCCC
TGTGCGACATCGAGACGGACAAGGCAACCATGGCCTTCGAAGCGCAGGTA
TGTCAGGGTGGCtacaagggggaggggggggacacaGTGCCGGAGAAATG
ACAGCTGGAAAGGCGGAAGCTGGGCGTCAAGTCTCACCCTCTGAGAAAGG
GGTAGCGGGAGGTATGAATGAGGCTCCCTGCCGGGGGAtagggtgggaag
gggaagatgcCCCGCAGGCACCTTACGCACCTTACCCACACCTTTGTAAT
CCGAGTTGAATTTTTCACCCGCCCCTgcaccgtcttctcccccctgcaTT
TCCCtatcttttttcttccttttcattaGGATGAGGGAGCCGTGGCCAAA
ATCCTAGTCGAAGAGGGCACGAGCGACATTGCCGTCGGATCACCCATCAT
GGTGAgcagccccccctccctccctctttccctccctccctacctccctc
gaCCACTCCCCCGCTGcacccctgcccccttcccacccctctctcctctc
ttctcccccccttcccctgtgTCAGGTCATCGTCGAGTCCAAAGATGACG
TGGCCGCCTTCGCCGATTTTACTCTCGCGCAagccagccccgcccccgct
gcTGTag

Coding sequence (CDS) from alignment at CM002455.1:1424405..1426111+

>rna573 ID=rna573|Name=rna573|organism=Nannochloropsis gaditana|type=CDS|length=2751bp|location=Sequence derived from alignment at CM002455.1:1424405..1426111+ (Nannochloropsis gaditana)
ATGCTGGCATTCGCTTCGAGACGACTGGTAGTCGCCGGTGCTGTCACCCG
GGCAGGCACCCGAGGGGCGCTGCCACGCGCATCAAGGCCGAAATATCTCG
CATCCACGATGGAAAGAGCCACGTTTGCGTCCCTTCCTGAGCATACTGTG
GTGGGAATGCCAGCACTTTCGCCCACGATGACCCACGGCAATGTGGCGGT
GTGGCACAAGAAGgAAGGCGATGAAATCGGGCCGGGCGATGCCCTGTGCG
ACATCGAGACGGACAAGGCAACCATGGCCTTCGAAGCGCAGGATGAGGGA
GCCGTGGCCAAAATCCTAGTCGAAGAGGGCACGAGCGACATTGCCGTCGG
ATCACCCATCATGGTCATCccagccccgcccccgctgcTGTagATGCTGG
CATTCGCTTCGAGACGACTGGTAGTCGCCGGTGCTGTCACCCGGGCAGGC
ACCCGAGGGGCGCTGCCACGCGCATCAAGGCCGAAATATCTCGCATCCAC
GATGGAAAGAGCCACGTTTGCGTCCCTTCCTGAGCATACTGTGGTGGGAA
TGCCAGCACTTTCGCCCACGATGACCCACGGCAATGTGGCGGTGTGGCAC
AAGAAGgAAGGCGATGAAATCGGGCCGGGCGATGCCCTGTGCGACATCGA
GACGGACAAGGCAACCATGGCCTTCGAAGCGCAGGATGAGGGAGCCGTGG
CCAAAATCCTAGTCGAAGAGGGCACGAGCGACATTGCCGTCGGATCACCC
ATCATGGTCATCccagccccgcccccgctgcTGTagATGCTGGCATTCGC
TTCGAGACGACTGGTAGTCGCCGGTGCTGTCACCCGGGCAGGCACCCGAG
GGGCGCTGCCACGCGCATCAAGGCCGAAATATCTCGCATCCACGATGGAA
AGAGCCACGTTTGCGTCCCTTCCTGAGCATACTGTGGTGGGAATGCCAGC
ACTTTCGCCCACGATGACCCACGGCAATGTGGCGGTGTGGCACAAGAAGg
AAGGCGATGAAATCGGGCCGGGCGATGCCCTGTGCGACATCGAGACGGAC
AAGGCAACCATGGCCTTCGAAGCGCAGGATGAGGGAGCCGTGGCCAAAAT
CCTAGTCGAAGAGGGCACGAGCGACATTGCCGTCGGATCACCCATCATGG
TCATCccagccccgcccccgctgcTGTagATGCTGGCATTCGCTTCGAGA
CGACTGGTAGTCGCCGGTGCTGTCACCCGGGCAGGCACCCGAGGGGCGCT
GCCACGCGCATCAAGGCCGAAATATCTCGCATCCACGATGGAAAGAGCCA
CGTTTGCGTCCCTTCCTGAGCATACTGTGGTGGGAATGCCAGCACTTTCG
CCCACGATGACCCACGGCAATGTGGCGGTGTGGCACAAGAAGgAAGGCGA
TGAAATCGGGCCGGGCGATGCCCTGTGCGACATCGAGACGGACAAGGCAA
CCATGGCCTTCGAAGCGCAGGATGAGGGAGCCGTGGCCAAAATCCTAGTC
GAAGAGGGCACGAGCGACATTGCCGTCGGATCACCCATCATGGTCATCcc
agccccgcccccgctgcTGTagATGCTGGCATTCGCTTCGAGACGACTGG
TAGTCGCCGGTGCTGTCACCCGGGCAGGCACCCGAGGGGCGCTGCCACGC
GCATCAAGGCCGAAATATCTCGCATCCACGATGGAAAGAGCCACGTTTGC
GTCCCTTCCTGAGCATACTGTGGTGGGAATGCCAGCACTTTCGCCCACGA
TGACCCACGGCAATGTGGCGGTGTGGCACAAGAAGgAAGGCGATGAAATC
GGGCCGGGCGATGCCCTGTGCGACATCGAGACGGACAAGGCAACCATGGC
CTTCGAAGCGCAGGATGAGGGAGCCGTGGCCAAAATCCTAGTCGAAGAGG
GCACGAGCGACATTGCCGTCGGATCACCCATCATGGTCATCccagccccg
cccccgctgcTGTagATGCTGGCATTCGCTTCGAGACGACTGGTAGTCGC
CGGTGCTGTCACCCGGGCAGGCACCCGAGGGGCGCTGCCACGCGCATCAA
GGCCGAAATATCTCGCATCCACGATGGAAAGAGCCACGTTTGCGTCCCTT
CCTGAGCATACTGTGGTGGGAATGCCAGCACTTTCGCCCACGATGACCCA
CGGCAATGTGGCGGTGTGGCACAAGAAGgAAGGCGATGAAATCGGGCCGG
GCGATGCCCTGTGCGACATCGAGACGGACAAGGCAACCATGGCCTTCGAA
GCGCAGGATGAGGGAGCCGTGGCCAAAATCCTAGTCGAAGAGGGCACGAG
CGACATTGCCGTCGGATCACCCATCATGGTCATCccagccccgcccccgc
tgcTGTagATGCTGGCATTCGCTTCGAGACGACTGGTAGTCGCCGGTGCT
GTCACCCGGGCAGGCACCCGAGGGGCGCTGCCACGCGCATCAAGGCCGAA
ATATCTCGCATCCACGATGGAAAGAGCCACGTTTGCGTCCCTTCCTGAGC
ATACTGTGGTGGGAATGCCAGCACTTTCGCCCACGATGACCCACGGCAAT
GTGGCGGTGTGGCACAAGAAGgAAGGCGATGAAATCGGGCCGGGCGATGC
CCTGTGCGACATCGAGACGGACAAGGCAACCATGGCCTTCGAAGCGCAGG
ATGAGGGAGCCGTGGCCAAAATCCTAGTCGAAGAGGGCACGAGCGACATT
GCCGTCGGATCACCCATCATGGTCATCccagccccgcccccgctgcTGTa
g

Synonyms

Publications