EWM30104.1, cds573 (CDS) Nannochloropsis gaditana

Overview
NameEWM30104.1
Unique Namecds573
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1424405..1424459 +
Alignment locationCM002455.1:1424680..1424787 +
Alignment locationCM002455.1:1425128..1425177 +
Alignment locationCM002455.1:1425474..1425551 +
Alignment locationCM002455.1:1425834..1425905 +
Alignment locationCM002455.1:1426030..1426035 +
Alignment locationCM002455.1:1426088..1426111 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30104.1
Productdihydrolipoamide s-acetyltransferase
Orig transcript idgnl|cribi|Naga_100258g1.3332.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1424405..1424459 +
CM002455.1supercontigCM002455.1:1424680..1424787 +
CM002455.1supercontigCM002455.1:1425128..1425177 +
CM002455.1supercontigCM002455.1:1425474..1425551 +
CM002455.1supercontigCM002455.1:1425834..1425905 +
CM002455.1supercontigCM002455.1:1426030..1426035 +
CM002455.1supercontigCM002455.1:1426088..1426111 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0008152metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0016740transferase activity
Vocabulary: Cellular Component
TermDefinition
GO:0005739mitochondrion
Vocabulary: INTERPRO
TermDefinition
IPR011053Single_hybrid_motif
IPR0030162-oxoA_DH_lipoyl-BS
IPR000089Biotin_lipoyl
Homology
BLAST of EWM30104.1 vs. NCBI_GenBank
Match: gi|585112747|gb|EWM30104.1| (dihydrolipoamide s-acetyltransferase [Nannochloropsis gaditana])

HSP 1 Score: 262.307 bits (669), Expect = 1.179e-88
Identity = 130/130 (100.00%), Postives = 130/130 (100.00%), Query Frame = 0
Query:    1 MLAFASRRLVVAGAVTRAGTRGALPRASRPKYLASTMERATFASLPEHTVVGMPALSPTMTHGNVAVWHKKEGDEIGPGDALCDIETDKATMAFEAQDEGAVAKILVEEGTSDIAVGSPIMVIPAPPPLL 130
            MLAFASRRLVVAGAVTRAGTRGALPRASRPKYLASTMERATFASLPEHTVVGMPALSPTMTHGNVAVWHKKEGDEIGPGDALCDIETDKATMAFEAQDEGAVAKILVEEGTSDIAVGSPIMVIPAPPPLL
Sbjct:    1 MLAFASRRLVVAGAVTRAGTRGALPRASRPKYLASTMERATFASLPEHTVVGMPALSPTMTHGNVAVWHKKEGDEIGPGDALCDIETDKATMAFEAQDEGAVAKILVEEGTSDIAVGSPIMVIPAPPPLL 130          
BLAST of EWM30104.1 vs. NCBI_GenBank
Match: gi|553192732|ref|XP_005855634.1| (dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex [Nannochloropsis gaditana CCMP526] >gi|422293423|gb|EKU20723.1| dihydrolipoyllysine-residue acetyltransferase component 1 of pyruvate dehydrogenase complex [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 155.606 bits (392), Expect = 4.421e-47
Identity = 85/121 (70.25%), Postives = 85/121 (70.25%), Query Frame = 0
Query:    1 MLAFASRRLVVAGAVTRAGTRGALPRASRPKYLASTMERATFASLPEHTVVGMPALSPTMTHGNVAVWHKKEGDEIGPGDALCDIETDKATMAFEAQDEGAVAKILVEEGTSDIAVGSPIM 121
            MLAFASRRLVVAGAVTRA                                    ALSPTMTHGNVAVWHKKEGDEIGPGDALCDIETDKATMAFEAQDEGAVAKILVEEGTSDIAVGSPIM
Sbjct:    1 MLAFASRRLVVAGAVTRA------------------------------------ALSPTMTHGNVAVWHKKEGDEIGPGDALCDIETDKATMAFEAQDEGAVAKILVEEGTSDIAVGSPIM 85          
BLAST of EWM30104.1 vs. NCBI_GenBank
Match: gi|254576873|ref|XP_002494423.1| (ZYRO0A01144p [Zygosaccharomyces rouxii] >gi|238937312|emb|CAR25490.1| ZYRO0A01144p [Zygosaccharomyces rouxii] >gi|1128477319|dbj|GAV46462.1| hypothetical protein ZYGR_0A00540 [Zygosaccharomyces rouxii])

HSP 1 Score: 127.102 bits (318), Expect = 3.801e-32
Identity = 63/102 (61.76%), Postives = 74/102 (72.55%), Query Frame = 0
Query:   21 RGALPRASRPKYLASTMERATFASLPEHTVVGMPALSPTMTHGNVAVWHKKEGDEIGPGDALCDIETDKATMAFEAQDEGAVAKILVEEGTSDIAVGSPIMV 122
            R A+PR +R   LAS +    +AS P HTV+GMPALSPTM  GN+A W KKEG++IG GD L +IETDKATM FE QDE  +AKILV EGT DI +G PI V
Sbjct:    6 RAAVPRVARIS-LASRLALRCYASYPAHTVIGMPALSPTMAQGNLAQWSKKEGEQIGAGDVLAEIETDKATMDFEFQDEAYLAKILVPEGTKDIPIGKPIAV 106          
BLAST of EWM30104.1 vs. NCBI_GenBank
Match: gi|401840963|gb|EJT43569.1| (LAT1-like protein [Saccharomyces kudriavzevii IFO 1802])

HSP 1 Score: 125.946 bits (315), Expect = 1.157e-31
Identity = 59/101 (58.42%), Postives = 74/101 (73.27%), Query Frame = 0
Query:   24 LPRASRPKYLASTM--ERATFASLPEHTVVGMPALSPTMTHGNVAVWHKKEGDEIGPGDALCDIETDKATMAFEAQDEGAVAKILVEEGTSDIAVGSPIMV 122
            LPR SR   L  ++  +   +AS PEHT++GMPALSPTMT GN+AVW KKEGD++ PG+ + +IETDKA M FE Q++G +AKILV EGT DI V  PI V
Sbjct:    8 LPRISRSSVLTRSLRLQLRCYASYPEHTIIGMPALSPTMTQGNLAVWSKKEGDQLAPGEVIAEIETDKAQMDFEFQEDGYLAKILVPEGTKDIPVNKPIAV 108          
BLAST of EWM30104.1 vs. NCBI_GenBank
Match: gi|401623867|gb|EJS41948.1| (lat1p [Saccharomyces arboricola H-6])

HSP 1 Score: 124.79 bits (312), Expect = 3.075e-31
Identity = 58/101 (57.43%), Postives = 74/101 (73.27%), Query Frame = 0
Query:   24 LPRASRPKYLASTM--ERATFASLPEHTVVGMPALSPTMTHGNVAVWHKKEGDEIGPGDALCDIETDKATMAFEAQDEGAVAKILVEEGTSDIAVGSPIMV 122
            LPR SR   L  ++  +   +AS P+HT++GMPALSPTMT GN+AVW KKEGD++ PG+ + +IETDKA M FE Q++G +AKILV EGT DI V  PI V
Sbjct:    8 LPRISRSSVLTRSLRLQLRCYASYPQHTIIGMPALSPTMTQGNLAVWTKKEGDQLAPGEVIAEIETDKAQMDFEFQEDGYLAKILVPEGTKDIPVNKPIAV 108          
BLAST of EWM30104.1 vs. NCBI_GenBank
Match: gi|50291443|ref|XP_448154.1| (hypothetical protein [Candida glabrata CBS 138] >gi|49527465|emb|CAG61105.1| unnamed protein product [[Candida] glabrata] >gi|961817908|gb|KTB19863.1| Dihydrolipoyllysine-residue acetyltransferase [[Candida] glabrata] >gi|961818048|gb|KTB20000.1| Dihydrolipoyllysine-residue acetyltransferase [[Candida] glabrata])

HSP 1 Score: 124.405 bits (311), Expect = 4.479e-31
Identity = 62/103 (60.19%), Postives = 72/103 (69.90%), Query Frame = 0
Query:   23 ALPRASRPKY---LASTMERATFASLPEHTVVGMPALSPTMTHGNVAVWHKKEGDEIGPGDALCDIETDKATMAFEAQDEGAVAKILVEEGTSDIAVGSPIMV 122
            ALP+ SR      L + M    +AS P HTV+GMPALSPTM+ GN+AVW KKEGD + PGD L +IETDKA M FE QDEG +AKILV  GT D+AV  PI V
Sbjct:    7 ALPQVSRTALRGRLVTPMTLRLYASFPPHTVIGMPALSPTMSQGNLAVWSKKEGDSLAPGDVLAEIETDKAQMDFEFQDEGYLAKILVPAGTKDVAVSRPIAV 109          
BLAST of EWM30104.1 vs. NCBI_GenBank
Match: gi|961772377|gb|KTA98065.1| (Dihydrolipoyllysine-residue acetyltransferase [[Candida] glabrata] >gi|961783626|gb|KTB09042.1| Dihydrolipoyllysine-residue acetyltransferase [[Candida] glabrata] >gi|961785251|gb|KTB10440.1| Dihydrolipoyllysine-residue acetyltransferase [[Candida] glabrata] >gi|961817811|gb|KTB19769.1| Dihydrolipoyllysine-residue acetyltransferase [[Candida] glabrata])

HSP 1 Score: 124.405 bits (311), Expect = 4.913e-31
Identity = 62/103 (60.19%), Postives = 72/103 (69.90%), Query Frame = 0
Query:   23 ALPRASRPKY---LASTMERATFASLPEHTVVGMPALSPTMTHGNVAVWHKKEGDEIGPGDALCDIETDKATMAFEAQDEGAVAKILVEEGTSDIAVGSPIMV 122
            ALP+ SR      L + M    +AS P HTV+GMPALSPTM+ GN+AVW KKEGD + PGD L +IETDKA M FE QDEG +AKILV  GT D+AV  PI V
Sbjct:    7 ALPQVSRTALRGRLVTPMTLRLYASFPPHTVIGMPALSPTMSQGNLAVWSKKEGDSLAPGDVLAEIETDKAQMDFEFQDEGYLAKILVPAGTKDVAVSRPIAV 109          
BLAST of EWM30104.1 vs. NCBI_GenBank
Match: gi|1128468320|dbj|GAV56071.1| (hypothetical protein ZYGR_0AZ02430 [Zygosaccharomyces rouxii])

HSP 1 Score: 124.02 bits (310), Expect = 5.185e-31
Identity = 62/102 (60.78%), Postives = 72/102 (70.59%), Query Frame = 0
Query:   21 RGALPRASRPKYLASTMERATFASLPEHTVVGMPALSPTMTHGNVAVWHKKEGDEIGPGDALCDIETDKATMAFEAQDEGAVAKILVEEGTSDIAVGSPIMV 122
            R A+PR +R   L S +    +AS P HTV+GMPALSPTM  GN+A W KKEG++I  GD L +IETDKATM FE QDE  +AKILV EGT DI VG PI V
Sbjct:    6 RAAIPRVARIS-LTSRLALRCYASYPAHTVIGMPALSPTMAQGNLAQWSKKEGEQIAAGDVLAEIETDKATMDFEFQDEAYLAKILVPEGTKDIPVGKPIAV 106          
BLAST of EWM30104.1 vs. NCBI_GenBank
Match: gi|1069861199|ref|XP_018219804.1| (LAT1-like protein [Saccharomyces eubayanus] >gi|918731094|gb|KOG97086.1| LAT1-like protein [Saccharomyces eubayanus])

HSP 1 Score: 123.635 bits (309), Expect = 1.109e-30
Identity = 58/101 (57.43%), Postives = 73/101 (72.28%), Query Frame = 0
Query:   24 LPRASRPKYLASTM--ERATFASLPEHTVVGMPALSPTMTHGNVAVWHKKEGDEIGPGDALCDIETDKATMAFEAQDEGAVAKILVEEGTSDIAVGSPIMV 122
            LPR SR   L  ++  +   +AS P HT++GMPALSPTMT GN+AVW KKEGD++ PG+ + +IETDKA M FE Q++G +AKILV EGT DI V  PI V
Sbjct:    8 LPRISRSSVLTRSLRLQLRCYASYPAHTIIGMPALSPTMTQGNLAVWSKKEGDQLAPGEVIAEIETDKAQMDFEFQEDGYLAKILVPEGTKDIPVNKPIAV 108          
BLAST of EWM30104.1 vs. NCBI_GenBank
Match: gi|767246708|gb|AJT24869.1| (Lat1p [Saccharomyces cerevisiae YJM1388])

HSP 1 Score: 122.865 bits (307), Expect = 1.689e-30
Identity = 58/101 (57.43%), Postives = 73/101 (72.28%), Query Frame = 0
Query:   24 LPRASRPKYLASTM--ERATFASLPEHTVVGMPALSPTMTHGNVAVWHKKEGDEIGPGDALCDIETDKATMAFEAQDEGAVAKILVEEGTSDIAVGSPIMV 122
            +PR SR   L  ++  +   +AS PEHTV+GMPALSPTMT GN+A W KKEGD++ PG+ + +IETDKA M FE Q++G +AKILV EGT DI V  PI V
Sbjct:    8 VPRISRSSVLTRSLRLQLRCYASYPEHTVIGMPALSPTMTQGNLAAWTKKEGDQLSPGEVIAEIETDKAQMDFEFQEDGYLAKILVPEGTKDIPVNKPIAV 108          
The following BLAST results are available for this feature:
BLAST of EWM30104.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112747|gb|EWM30104.1|1.179e-88100.00dihydrolipoamide s-acetyltransferase [Nannochlorop... [more]
gi|553192732|ref|XP_005855634.1|4.421e-4770.25dihydrolipoyllysine-residue acetyltransferase comp... [more]
gi|254576873|ref|XP_002494423.1|3.801e-3261.76ZYRO0A01144p [Zygosaccharomyces rouxii] >gi|238937... [more]
gi|401840963|gb|EJT43569.1|1.157e-3158.42LAT1-like protein [Saccharomyces kudriavzevii IFO ... [more]
gi|401623867|gb|EJS41948.1|3.075e-3157.43lat1p [Saccharomyces arboricola H-6][more]
gi|50291443|ref|XP_448154.1|4.479e-3160.19hypothetical protein [Candida glabrata CBS 138] >g... [more]
gi|961772377|gb|KTA98065.1|4.913e-3160.19Dihydrolipoyllysine-residue acetyltransferase [[Ca... [more]
gi|1128468320|dbj|GAV56071.1|5.185e-3160.78hypothetical protein ZYGR_0AZ02430 [Zygosaccharomy... [more]
gi|1069861199|ref|XP_018219804.1|1.109e-3057.43LAT1-like protein [Saccharomyces eubayanus] >gi|91... [more]
gi|767246708|gb|AJT24869.1|1.689e-3057.43Lat1p [Saccharomyces cerevisiae YJM1388][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna573rna573Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications