rna5724, rna5724 (mRNA) Nannochloropsis gaditana

Overview
Namerna5724
Unique Namerna5724
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1005
Alignment locationCM002466.1:679062..680531 -

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Properties
Property NameValue
Productshort-chain dehydrogenase reductase sdr
Orig transcript idgnl|cribi|Naga_100148g2.7153.mrna
Orig protein idgnl|cribi|Naga_100148g2.7153
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:679062..680531 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100148g2gene5529Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24961.1cds5709Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5724rna5724-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5724 ID=rna5724|Name=rna5724|organism=Nannochloropsis gaditana|type=mRNA|length=1005bp
CCAAGCGTCACCAGCACAGGTGTCCCTGCTGCTGCCACGTTGCCGAACTC
GATGGGCACGCCCGCCACGGCCCCCGCCACTGCAATCAACACCACTCTTG
CCCCAGCGACAGCCCCCTCTCTACCCATCCAGCCTCCGACGCAGCCTGCG
GCTGGTGCGGTCACAAACTCTCCTGGTCAACCCTCGGAAGGGCCAAAGGA
TGTTGAGACACGCTCGCCGACCCTCTCCCCCACGTCCACGGTGCCCATCA
CTTCGCCTTTGGACGAGGACGCCCCCCTGGACGAGGACGAACACACCAAC
GCGCCGCCCATCGGCGCGGCAGACATTGTCCCTATTCCGAGTGCGAATGC
GTCTGTCCCAATCTCCACCTCTACAGAGGCGCCCGAGCCCGATTTTCCGT
CGCCGGGTCTGGTCACGCCTCCTACCCTCCCCCCCTCGCTCCCCGCGGTG
ACACCTGCGATTCCATTACCCACAGAAGCCCCCCCACAAAAGCATGGAAA
CCTTCGTGCACGCCACGGACTTTGGTGAGATTTGTCTCTCGTGATTTCGG
CTGTTACCGGTTTATGTCTGTGAACACCTTTTTAAAACCGACCAAGGCAG
GCAGCCGTAGTGGAGAGAACGCGGGGCAGACGACGTCGAGAAAACCCCTC
CCCCTATTGTGTCGCCAAGACGTCATGTTTCTTGCCAGGAATGTCGGATA
GATGTGGCCGTGCTAATCACTTCTGACAGATTTTACGCTGAAGCACTTAT
ATAGGGTTTGCGCCTGAATTCACGGAGGCAAGGGCGTTTTCCAGCACCTT
TTTCGGGAATCCAATCATCACATAATCAATTGGAGGTCTTACATACAATC
TGCTCATTCAATCACCTAGAGTAACAGAGAGTTTGGGAAAGAAGGTCTCC
TTAAAACCGACAGACACACATAGTTCGAATCCGTCACGTTCATTACCGAG
CATCAGATAAGTTTTTTAAAGAAAAATGTTGGGATTTCGCAAACCACAGT
TCCTA
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protein sequence of rna5724

>rna5724-protein ID=rna5724-protein|Name=rna5724|organism=Nannochloropsis gaditana|type=polypeptide|length=324bp
MGNLLSFSSGPSIDNFLDGKVVWITGASSGLGKAMAIEAARRGARVILSA
RSIDKLKNVEQECLAVSPLKTSNASRSARSRCSSSDAPSATVLVHPLDML
RYDDGSFDAAIALVLSTMGGLDILVNNAGVSTRSSAEETSLSVDQSVMAT
NFFGPVALTKAALCLLRQSPSRSPHIVVVNSAQGKLGLGMRTSYAASKHA
LTGYFDSLRAELSLESIPVTTVFPGYIRTDLSLNALTGRGEKYAQMDETT
AKGLDPTRLAVKIFQAAAAGKQEVIFAPIDARAAIYLRNIIPHVVFRILA
RKAQKALRDRIPNESRREETKKKK
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mRNA from alignment at CM002466.1:679062..680531-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5724 ID=rna5724|Name=rna5724|organism=Nannochloropsis gaditana|type=mRNA|length=1470bp|location=Sequence derived from alignment at CM002466.1:679062..680531- (Nannochloropsis gaditana)
AAAAGCGCCGGCAAACCTCTCTGTCTTGCCCTTTTAGGAGAGGCTCGCAC
CCGACAATCTTTCCCAACACAAGTAAATCGGTGCATGAGGCGCGGAACAA
GGTCAAATCTTTGGGCCGTGCTGCTGTTGCTTGTACTTTCGGGTGGATCT
GCTTTTGTAAAGTTGTTCAAGGCGTCCGTCGCGAGGTACGTCCGATGTTC
ATGAAGACGTACACGATAACTCCTTGATACTGCAAGAAACCATTCATCAT
CTCGAATGTGAATGATTACGAGGGTGTCTGTCGACCGCTGAAGCCGCTTT
CAAGGGCAAGGGACGAGTGGGATAGTTTTCGGATCAGGCAATTAGGTCAG
GATGGTTTAACCGATTATCGATCCTTTTGATCTACCAACCCTCCTCTAGG
CGCCCTTGTCATTTTCGGCGTACAAACCATCGACTAGTCATGGGCAATTT
GCTTTCTTTTTCATCCGGTCCGTCCATCGACAATTTCTTGGATGGAAAAG
TCGTATGGATTACTGGTGCGAGCTCAGGATTAGGGAAGGCAATGGCTATT
GAAGCAGCTCGACGCGGGGCTCGTGTTATCTTAAGTGCCCGAAGCATTGA
TAAGTTGAAAAATGTCGAGCAGGAATGCCTGGCGGTTTCGCCATTGAAGA
CATCGAACGCGTCAAGATCAGCGCGTTCGCGTTGCTCTTCCTCCGATGCT
CCCTCCGCCACAGTGCTTGTCCACCCTTTGGACATGCTCAGGTACGACGA
CGGTAGTTTTGACGCCGCCATTGCCCTTGTGCTTAGCACAATGGGTGGCT
TGGACATCCTCGTGAACAACGCGGGGGTCTCCACGCGCAGCTCCGCCGAA
GAGACCTCGCTCTCTGTAGACCAGTCCGTGATGGCAACCAATTTCTTTGG
GCCCGTGGCACTGACCAAGGCGGCATTGTGCTTGCTTCGCCAAAGTCCCT
CACGCTCGCCGCACATAGTGGTAGTGAACAGTGCGCAGGGAAAGCTGGGC
TTGGGTATGCGCACGTCCTATGCGGCCTCCAAGCACGCCCTCACCGGCTA
CTTCGATTCCTTGAGGGCCGAGCTGAGTCTGGAATCCATTCCTGTCACTA
CGGTCTTCCCTGGCTATATCAGAACAGATTTATCGTTGAACGCCTTGACG
GGTCGAGGGGAGAAATACGCACAGATGGATGAGACGACGGCCAAGGGCCT
CGACCCCACCCGTCTGGCCGTGAAGATCTTTCAAGCCGCGGCTGCTGGGA
AGCAAGAGGTAATCTTCGCTCCTATTGATGCGAGGGCAGCGATATACTTG
CGGAATATCATTCCACATGTGGTGTTCAGAATTTTGGCCCGCAAGGCCCA
GAAGGCATTAAGAGACAGGATACCGAATGAAAGCAGGCGCGAGGAGACCA
AGAAAAAGAAATAAGAGATGAGGAAGCACTCGCGCGCTCCCCAAAGAATT
TCATACGGCTCGCGAATTAC
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Coding sequence (CDS) from alignment at CM002466.1:679062..680531-

>rna5724 ID=rna5724|Name=rna5724|organism=Nannochloropsis gaditana|type=CDS|length=975bp|location=Sequence derived from alignment at CM002466.1:679062..680531- (Nannochloropsis gaditana)
ATGGGCAATTTGCTTTCTTTTTCATCCGGTCCGTCCATCGACAATTTCTT
GGATGGAAAAGTCGTATGGATTACTGGTGCGAGCTCAGGATTAGGGAAGG
CAATGGCTATTGAAGCAGCTCGACGCGGGGCTCGTGTTATCTTAAGTGCC
CGAAGCATTGATAAGTTGAAAAATGTCGAGCAGGAATGCCTGGCGGTTTC
GCCATTGAAGACATCGAACGCGTCAAGATCAGCGCGTTCGCGTTGCTCTT
CCTCCGATGCTCCCTCCGCCACAGTGCTTGTCCACCCTTTGGACATGCTC
AGGTACGACGACGGTAGTTTTGACGCCGCCATTGCCCTTGTGCTTAGCAC
AATGGGTGGCTTGGACATCCTCGTGAACAACGCGGGGGTCTCCACGCGCA
GCTCCGCCGAAGAGACCTCGCTCTCTGTAGACCAGTCCGTGATGGCAACC
AATTTCTTTGGGCCCGTGGCACTGACCAAGGCGGCATTGTGCTTGCTTCG
CCAAAGTCCCTCACGCTCGCCGCACATAGTGGTAGTGAACAGTGCGCAGG
GAAAGCTGGGCTTGGGTATGCGCACGTCCTATGCGGCCTCCAAGCACGCC
CTCACCGGCTACTTCGATTCCTTGAGGGCCGAGCTGAGTCTGGAATCCAT
TCCTGTCACTACGGTCTTCCCTGGCTATATCAGAACAGATTTATCGTTGA
ACGCCTTGACGGGTCGAGGGGAGAAATACGCACAGATGGATGAGACGACG
GCCAAGGGCCTCGACCCCACCCGTCTGGCCGTGAAGATCTTTCAAGCCGC
GGCTGCTGGGAAGCAAGAGGTAATCTTCGCTCCTATTGATGCGAGGGCAG
CGATATACTTGCGGAATATCATTCCACATGTGGTGTTCAGAATTTTGGCC
CGCAAGGCCCAGAAGGCATTAAGAGACAGGATACCGAATGAAAGCAGGCG
CGAGGAGACCAAGAAAAAGAAATAA
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Synonyms
Publications