rna5722, rna5722 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5722
Unique Name	rna5722
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2002
Alignment location	CM002466.1:675811..677950 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100186g1.5606.mrna
Orig protein id	gnl\|cribi\|Naga_100186g1.5606
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:675811..677950 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100186g1	gene5527	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5722	rna5722-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24967.1	cds5707	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:675811..677950+
coding sequence from alignment at CM002466.1:675811..677950+

mRNA sequence

>rna5722 ID=rna5722|Name=rna5722|organism=Nannochloropsis gaditana|type=mRNA|length=2002bp
TCTAACTCGGCGTTGACTTCCTCTCATTGCTCACCTGCGCGAAAAAAATC
GCAGCTTGACAGGTTGTGCCCCTGGACAAGGTCGCGTTTGCTTCTTTCAT
CACGTTTGGCAACCAGGGAAAAGGCACTCAGTAGTATCCTTCCATTTACC
GAGTGGGACCCTCTCGCACAAGGCACTGGGATACGATGCTCCTCCTCTTC
GAGACTCCCGCAGGATATGCTCTTTTCAAAGTATTGAAAGAGTCCAAGCT
TCAAGATGTGGAGAATCTGTGGAAGGAATTTGAGGATCCCGAGAAAGCCT
CCTCAATTGTAAAGCTTAAGGCCTTCCGTCCTTTCGATGGCACTGCTGAA
GCTGTTGCGGCCGCCTCGGACATTATAGAGAGCAATTTGGGGAAAGAACT
GAAGAAATTTTTAAAAAAGAGCATAAAGGACAAGGAAATGTCAGAGCAGC
TGGCCGTCGCAGATCATAAGCTGGGCGGACTGATCAAAGACAAACTAGGG
CTGAACATCGCTACCGGAGAGATAGCGTCTGAGCTATTCAGGGGCGTTCG
CACGCAGCTAGACTCCCTTTTGACCGGCCTCTCCGACTCGAACTTGAAGC
AAATGCAGCTAGGGCTCTCTCACTCCCTGTCCCGCTACAAGCTCAAGTTC
TCTGCGGACAAGGTGGACACGATGATCGTGCAAGCGATTGGCCTCTTGGA
TGAGCTCGACAAGGAGATAAATACGTACGCCATGCGTGTCCGGGAATGGT
ACGGGTGGCACTTTCCTGAATTGGTCAAGATTGTCAATGATAACGTGCAG
TACGCAAAGCTTGTTGTCCGCGTAGGGATGCGCACTGGCTTCAAGAACCA
GGATTTGTCGGACATTTTGGGGGACGACGCCGTCGAGCAGAGCGTGAAGG
AATCCGCAGAAATTAGCATGGGTCAGGAAATTTCCGAGAACGACTTGGCC
TCCATCCGCTCTCTCGCTCAAGAAGTGGTGGACCTGGCCGCCTACCGGAT
CAATTTATTCGAATATTTGAAAAATCGAATGCACGCCATCGCCCCCAACC
TGACCATCATGGTGGGGGAGTTGGTCGGGGCCCGCCTAATCGCGCACGCC
GGTTCCCTCTTGAACCTGGCCAAACACCCGGCATCCACCATCCAGATTCT
GGGGGCAGAGAAGGCGCTTTTTCGAGCCCTCAAGACGAAGCACGACACCC
CCAAGTACGGCCTCATTTACCACGCCTCGTTGATCGGCCAGGCTCAGCCC
AAGCACAAGGGTAAGATATCACGGGTGCTGGCTGCCAAGACGGCGCTCGC
GATCCGGGTGGACGCCATGGGGGACGAGACCGACACGAGCATGGGCGAGG
AGGCGCGGAGCAAGGTCGAGTTCAGGCTCCGGCAATTGGAGGGAGGCCAC
AAGACGAGTTTGACCGGAGGCATGCGGGGCAGCAGCAGTGGGAACGGGGG
CCCGGCGAAGTACGACAAGAAAGCGGCCTTGGGCGAAGGAGAGGGGGACG
GGTACAATGAGGCCTCCGATATGGTCGGGGTCACGACGGAGGTAGGAAGT
GCGGAGAAGAAGAAGAAGAAGAAGGAGAAGGAGAAGAGAAAGCGTGAATC
GGAGGGGGCCGGAGCGGAGGAGGGAGGGATGGGAGCAAGCAACGGTCAGG
CTTTGGAAATTGAGGAGGAGACGCCCTCGAAAAAGAAGAAGAAGAAGAGC
AAGACAGAGGCATCGACAGGGGCAGAGGAGGAGGAAGAAGAGAGCCCCAA
GAAGAAGAAAAAGAAGGACAAGAAGAAGGAGAAGTAGCCTCGGAAGTCAG
AAGAAGATCAGGGAACGTACTGCCGACGACAGAAGCAGAGAGCCTAGCAG
GCCAATGCTTCTAGGTGTGATGATGGCAGGATTGATCAGATCTTGCGGCA
ACGTGTCTTTCGGCCTTTGCTCTTTGTGTTGTATAAAAGAAAAGGATGAA
AAGCGACCCAGACGGACTAAAAAAACGGAACAAGGACTCATTATTTAGAA
CA

protein sequence of rna5722

>rna5722-protein ID=rna5722-protein|Name=rna5722|organism=Nannochloropsis gaditana|type=polypeptide|length=710bp
MHIFRQPLANAFLLSIVVFYSSGHRYVNGFSSSSPRFQIVEKPPMPTQKP
TTDATLVMATDVPGTAATEEPAVLTDNEVAPVVPTPAVKPSETENLAPAS
ILPLPEEETSESAENGQPPAMMPSPLMPEAADNSSSVPLPATVESTPAPS
VNSSLPHPLSSESGPLDGGKGTSESHTTGLSSRGTFPLQLGVAPSGNASA
APSTVDAASNGSHAVVGGSQGLNETLAHALNETASHHSINSQAQSSTDSE
THPLSLNGTGAVNGSAAHMPSGNATSGEVSVHGSGLDGAVSVNGSLASGH
ANLNATGIANGTSSSVPLNATGAVGINATLPGGPAGAPEVPPLAPSLNGT
LPMANTNDTSGVSALAPSSQGVSEGGEVAERDPEAAEEDAADVGKDGESG
QNEDTSAALATNETIPAVATPQSSIETGPTILSTPAPTLTEVSEGAPMAT
GAEGVVEIGAGASGQALPSATPTNMPPAPPAITSAPPGTTNATGLPPPAA
ANATFPPTVPATLTNPEAPSAGDAIASPPVADGSPVIPTPAPLDASLPTL
SPAAPLPTAVPAVVATPPPALSATLPPSATSTQPAAATDTAAPLTVPPTA
PVTGVPAVPTSLPPTLPPAPVSTPAATLSPASPVGTVAPTLAPVDVSAAE
SVASPTDMPSVPAATLPPAASLGTAAPTVPPAAPSVTSTGTLSTDAPPVP
AATLPPAAPL

mRNA from alignment at CM002466.1:675811..677950+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5722 ID=rna5722|Name=rna5722|organism=Nannochloropsis gaditana|type=mRNA|length=2140bp|location=Sequence derived from alignment at CM002466.1:675811..677950+ (Nannochloropsis gaditana)
ATAGGCAACCATGCACATTTTCCGGCAACCATTGGCAAACGCCTTTCTAT
TAAGCATTGTTGTATTCTATAGCTCTGGGCATCGATATGTCAAtggcttt
tcttcttcatctccaAGGTTTCAAATCGTTGAAAAGCCCCCCATGCCTAC
ACAAAAACCCACAACCGACGCGACTTTGGTAATGGCCACCGACGTGCCGG
GCACTGCCGCCACCGAGGAGCCTGCTGTCCTTACCGATAACGAGGTTGCT
CCCGTGGTGCCTACCCCGGCTGTCAAACCATCCGAGACTGAGAACCTTGC
TCCGGCATCTATTTTGCCCCtgccggaggaagaaacaTCCGAGAGTGCTG
AAAATGGCCAGCCTCCCGCTATGATGCCTAGTCCTCTGATGCCTGAAGCT
GCTGACAACTCGTCGTCTGTGCCATTGCCGGCCACCGTGGAATCCACACC
GGCGCCCTCTGTGAACTCGAGCTTGCCTCATCCTCTGAGCTCTGAGTCCG
GCCCTCTAGACGGCGGAAAGGGGACAAGCGAGTCACACACGACCGGACTT
TCCTCCCGAGGAACTTTTCCGCTCCAGCTTGGAGTTGCACCTTCTGGGAA
TGCATCTGCTGCCCCATCGACAGTCGACGCAGCGTCAAATGGCTCCCACG
CTGTGGTCGGCGGGTCGCAAGGCCTGAACGAGACACTTGCTCATGCCCTC
AACGAAACAGCTTCTCACCACTCTATTAATTCCCAAGCTCAGTCTTCTAC
GGACTCAGAAACGCACCCCCTGAGCCTGAACGGGACAGGGGCTGTGAACG
GATCAGCGGCGCACATGCCCTCGGGGAATGCCACGTCCGGCGAGGTCTCC
GTCCACGGGAGCGGGTTGGACGGGGCAGTGTCCGTGAATGGAAGCCTTGC
CAGCGGCCATGCGAATCTAAACGCCACAGGCATTGCCAACGGGACATCGT
CTTCCGTCCCGCTCAATGCAACAGGCGCTGTCGGTATTAACGCGACGCTG
CCCGGTGGACCGGCGGGAGCCCCAGAGGTACCCCCTCTCGCCCCGTCACT
CAATGGCACACTCCCCATGGCAAATACAAACGATACGTCAGGCGTTTCGG
CCCTCGCCCCATCCTCACAAGGCGTATCAGAGGGCGGAGAGGTGGCTGAG
AGGGACCctgaagcggcggaggaggacgcagctGACGTGGGCAAAGATGG
GGAGTCGGGCCAGAACGAAGACACAAGCGCTGCGCTTGCAACCAACGAGA
CCATTCCTGCAGTAGCCACACCCCAAAGCTCCATCGAGACGGGCCCAACG
ATCCTCTCTACCCCGGCTCCCACCTTGACCGAGGTTTCGGAAGGGGCCCC
GATGGCCACCGGCGCCGAGGGCGTGGTCGAGATCGGCGCGGGTGCCTCGG
GCCAGGCCTTGCCTAGCGCCACGCCGACAAACATgccacctgccccgcct
gccaTAACCAGCGCACCTCCTGGCACGACGAATGCCACTGGactgccccc
gcctgccgctgCCAACGCGACGTTTCCGCCCACCGTACCGGCTACCCTGA
CAAATCCGGAGGCTCCCAGCGCCGGCGATGCGATTGCTTCACCTCCTGTG
GCGGACGGGTCTCCCGTGATTCCTACGCCTGCCCCCCTGGATGCTTCTCT
TCCAACCCTCTCCCCGGCTGCCCCGCTCCCTACGGCAGTGCCCGCCGTCG
TCGCGACCCCACCCCCCGCTCTTTccgccacccttcccccttctgcGACA
TCTACCCAGCCGGCTGCCGCGACGGACACAGCCGCGCCTTTGACAGttcc
ccccaccgcccctgTCACAGGCGTTCCAGCCGTCCCCACGTCTCTTCCAC
CCACGCTACCACCAGCCCCggtctccacgcccgcggcgaccctctccccg
gcctcgcctGTGGGCACCGTAGCGCCCACCCTTGCTCCAGTGGATGTCTC
AGCCGCAGAGTCTGTCGCCTCGCCCACTGACATGCCAAGTGTGCCGGCTG
CAACGTTGCCTCCAGCGGCCTCCCTTGGCACGGCCGCCCCGACTGTACCT
CCTGCCGCTCCCAGCGTCACCAGCACAGGCACTTTGTCCACTGACGCGCC
ACCTGTGCCTGCTGCGACGTTGCCTCCAGCGGCCCCGCTT

Coding sequence (CDS) from alignment at CM002466.1:675811..677950+

>rna5722 ID=rna5722|Name=rna5722|organism=Nannochloropsis gaditana|type=CDS|length=2130bp|location=Sequence derived from alignment at CM002466.1:675811..677950+ (Nannochloropsis gaditana)
ATGCACATTTTCCGGCAACCATTGGCAAACGCCTTTCTATTAAGCATTGT
TGTATTCTATAGCTCTGGGCATCGATATGTCAAtggcttttcttcttcat
ctccaAGGTTTCAAATCGTTGAAAAGCCCCCCATGCCTACACAAAAACCC
ACAACCGACGCGACTTTGGTAATGGCCACCGACGTGCCGGGCACTGCCGC
CACCGAGGAGCCTGCTGTCCTTACCGATAACGAGGTTGCTCCCGTGGTGC
CTACCCCGGCTGTCAAACCATCCGAGACTGAGAACCTTGCTCCGGCATCT
ATTTTGCCCCtgccggaggaagaaacaTCCGAGAGTGCTGAAAATGGCCA
GCCTCCCGCTATGATGCCTAGTCCTCTGATGCCTGAAGCTGCTGACAACT
CGTCGTCTGTGCCATTGCCGGCCACCGTGGAATCCACACCGGCGCCCTCT
GTGAACTCGAGCTTGCCTCATCCTCTGAGCTCTGAGTCCGGCCCTCTAGA
CGGCGGAAAGGGGACAAGCGAGTCACACACGACCGGACTTTCCTCCCGAG
GAACTTTTCCGCTCCAGCTTGGAGTTGCACCTTCTGGGAATGCATCTGCT
GCCCCATCGACAGTCGACGCAGCGTCAAATGGCTCCCACGCTGTGGTCGG
CGGGTCGCAAGGCCTGAACGAGACACTTGCTCATGCCCTCAACGAAACAG
CTTCTCACCACTCTATTAATTCCCAAGCTCAGTCTTCTACGGACTCAGAA
ACGCACCCCCTGAGCCTGAACGGGACAGGGGCTGTGAACGGATCAGCGGC
GCACATGCCCTCGGGGAATGCCACGTCCGGCGAGGTCTCCGTCCACGGGA
GCGGGTTGGACGGGGCAGTGTCCGTGAATGGAAGCCTTGCCAGCGGCCAT
GCGAATCTAAACGCCACAGGCATTGCCAACGGGACATCGTCTTCCGTCCC
GCTCAATGCAACAGGCGCTGTCGGTATTAACGCGACGCTGCCCGGTGGAC
CGGCGGGAGCCCCAGAGGTACCCCCTCTCGCCCCGTCACTCAATGGCACA
CTCCCCATGGCAAATACAAACGATACGTCAGGCGTTTCGGCCCTCGCCCC
ATCCTCACAAGGCGTATCAGAGGGCGGAGAGGTGGCTGAGAGGGACCctg
aagcggcggaggaggacgcagctGACGTGGGCAAAGATGGGGAGTCGGGC
CAGAACGAAGACACAAGCGCTGCGCTTGCAACCAACGAGACCATTCCTGC
AGTAGCCACACCCCAAAGCTCCATCGAGACGGGCCCAACGATCCTCTCTA
CCCCGGCTCCCACCTTGACCGAGGTTTCGGAAGGGGCCCCGATGGCCACC
GGCGCCGAGGGCGTGGTCGAGATCGGCGCGGGTGCCTCGGGCCAGGCCTT
GCCTAGCGCCACGCCGACAAACATgccacctgccccgcctgccaTAACCA
GCGCACCTCCTGGCACGACGAATGCCACTGGactgcccccgcctgccgct
gCCAACGCGACGTTTCCGCCCACCGTACCGGCTACCCTGACAAATCCGGA
GGCTCCCAGCGCCGGCGATGCGATTGCTTCACCTCCTGTGGCGGACGGGT
CTCCCGTGATTCCTACGCCTGCCCCCCTGGATGCTTCTCTTCCAACCCTC
TCCCCGGCTGCCCCGCTCCCTACGGCAGTGCCCGCCGTCGTCGCGACCCC
ACCCCCCGCTCTTTccgccacccttcccccttctgcGACATCTACCCAGC
CGGCTGCCGCGACGGACACAGCCGCGCCTTTGACAGttccccccaccgcc
cctgTCACAGGCGTTCCAGCCGTCCCCACGTCTCTTCCACCCACGCTACC
ACCAGCCCCggtctccacgcccgcggcgaccctctccccggcctcgcctG
TGGGCACCGTAGCGCCCACCCTTGCTCCAGTGGATGTCTCAGCCGCAGAG
TCTGTCGCCTCGCCCACTGACATGCCAAGTGTGCCGGCTGCAACGTTGCC
TCCAGCGGCCTCCCTTGGCACGGCCGCCCCGACTGTACCTCCTGCCGCTC
CCAGCGTCACCAGCACAGGCACTTTGTCCACTGACGCGCCACCTGTGCCT
GCTGCGACGTTGCCTCCAGCGGCCCCGCTT

Synonyms

Publications