EWM24967.1, cds5707 (CDS) Nannochloropsis gaditana

Overview
NameEWM24967.1
Unique Namecds5707
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:675821..677950 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24967.1
Producthypothetical protein
Partialtrue
Orig transcript idgnl|cribi|Naga_100186g1.5606.mrna
GbkeyCDS
End range.
End range677950
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:675821..677950 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM24967.1 vs. NCBI_GenBank
Match: gi|585106599|gb|EWM24967.1| (hypothetical protein Naga_100186g1, partial [Nannochloropsis gaditana])

HSP 1 Score: 1305.43 bits (3377), Expect = 0.000e+0
Identity = 710/710 (100.00%), Postives = 710/710 (100.00%), Query Frame = 0 
Query:    1 MHIFRQPLANAFLLSIVVFYSSGHRYVNGFSSSSPRFQIVEKPPMPTQKPTTDATLVMATDVPGTAATEEPAVLTDNEVAPVVPTPAVKPSETENLAPASILPLPEEETSESAENGQPPAMMPSPLMPEAADNSSSVPLPATVESTPAPSVNSSLPHPLSSESGPLDGGKGTSESHTTGLSSRGTFPLQLGVAPSGNASAAPSTVDAASNGSHAVVGGSQGLNETLAHALNETASHHSINSQAQSSTDSETHPLSLNGTGAVNGSAAHMPSGNATSGEVSVHGSGLDGAVSVNGSLASGHANLNATGIANGTSSSVPLNATGAVGINATLPGGPAGAPEVPPLAPSLNGTLPMANTNDTSGVSALAPSSQGVSEGGEVAERDPEAAEEDAADVGKDGESGQNEDTSAALATNETIPAVATPQSSIETGPTILSTPAPTLTEVSEGAPMATGAEGVVEIGAGASGQALPSATPTNMPPAPPAITSAPPGTTNATGLPPPAAANATFPPTVPATLTNPEAPSAGDAIASPPVADGSPVIPTPAPLDASLPTLSPAAPLPTAVPAVVATPPPALSATLPPSATSTQPAAATDTAAPLTVPPTAPVTGVPAVPTSLPPTLPPAPVSTPAATLSPASPVGTVAPTLAPVDVSAAESVASPTDMPSVPAATLPPAASLGTAAPTVPPAAPSVTSTGTLSTDAPPVPAATLPPAAPL 710
            MHIFRQPLANAFLLSIVVFYSSGHRYVNGFSSSSPRFQIVEKPPMPTQKPTTDATLVMATDVPGTAATEEPAVLTDNEVAPVVPTPAVKPSETENLAPASILPLPEEETSESAENGQPPAMMPSPLMPEAADNSSSVPLPATVESTPAPSVNSSLPHPLSSESGPLDGGKGTSESHTTGLSSRGTFPLQLGVAPSGNASAAPSTVDAASNGSHAVVGGSQGLNETLAHALNETASHHSINSQAQSSTDSETHPLSLNGTGAVNGSAAHMPSGNATSGEVSVHGSGLDGAVSVNGSLASGHANLNATGIANGTSSSVPLNATGAVGINATLPGGPAGAPEVPPLAPSLNGTLPMANTNDTSGVSALAPSSQGVSEGGEVAERDPEAAEEDAADVGKDGESGQNEDTSAALATNETIPAVATPQSSIETGPTILSTPAPTLTEVSEGAPMATGAEGVVEIGAGASGQALPSATPTNMPPAPPAITSAPPGTTNATGLPPPAAANATFPPTVPATLTNPEAPSAGDAIASPPVADGSPVIPTPAPLDASLPTLSPAAPLPTAVPAVVATPPPALSATLPPSATSTQPAAATDTAAPLTVPPTAPVTGVPAVPTSLPPTLPPAPVSTPAATLSPASPVGTVAPTLAPVDVSAAESVASPTDMPSVPAATLPPAASLGTAAPTVPPAAPSVTSTGTLSTDAPPVPAATLPPAAPL
Sbjct:    1 MHIFRQPLANAFLLSIVVFYSSGHRYVNGFSSSSPRFQIVEKPPMPTQKPTTDATLVMATDVPGTAATEEPAVLTDNEVAPVVPTPAVKPSETENLAPASILPLPEEETSESAENGQPPAMMPSPLMPEAADNSSSVPLPATVESTPAPSVNSSLPHPLSSESGPLDGGKGTSESHTTGLSSRGTFPLQLGVAPSGNASAAPSTVDAASNGSHAVVGGSQGLNETLAHALNETASHHSINSQAQSSTDSETHPLSLNGTGAVNGSAAHMPSGNATSGEVSVHGSGLDGAVSVNGSLASGHANLNATGIANGTSSSVPLNATGAVGINATLPGGPAGAPEVPPLAPSLNGTLPMANTNDTSGVSALAPSSQGVSEGGEVAERDPEAAEEDAADVGKDGESGQNEDTSAALATNETIPAVATPQSSIETGPTILSTPAPTLTEVSEGAPMATGAEGVVEIGAGASGQALPSATPTNMPPAPPAITSAPPGTTNATGLPPPAAANATFPPTVPATLTNPEAPSAGDAIASPPVADGSPVIPTPAPLDASLPTLSPAAPLPTAVPAVVATPPPALSATLPPSATSTQPAAATDTAAPLTVPPTAPVTGVPAVPTSLPPTLPPAPVSTPAATLSPASPVGTVAPTLAPVDVSAAESVASPTDMPSVPAATLPPAASLGTAAPTVPPAAPSVTSTGTLSTDAPPVPAATLPPAAPL 710
The following BLAST results are available for this feature:
BLAST of EWM24967.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585106599|gb|EWM24967.1|0.000e+0100.00hypothetical protein Naga_100186g1, partial [Nanno... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5722rna5722Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications