rna5719, rna5719 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5719
Unique Name	rna5719
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3021
Alignment location	CM002466.1:665348..667339 -

Link to JBrowse

Properties


Property Name	Value
Product	trna -lysidine synthetase
Orig transcript id	gnl\|cribi\|Naga_100186g4.5609.mrna
Orig protein id	gnl\|cribi\|Naga_100186g4.5609
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:665348..667339 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100186g4	gene5524	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24970.1	cds5704	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5719	rna5719-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:665348..667339-
coding sequence from alignment at CM002466.1:665348..667339-

mRNA sequence

>rna5719 ID=rna5719|Name=rna5719|organism=Nannochloropsis gaditana|type=mRNA|length=3021bp
ATGGACAATTTTAACTCCTTCTTTCAAACTTTGTCGCGTGGACGCGCTGG
CAACGAAAAATCGTCGGGGGGAGGGGAGACTTCGGGCGCAACGCAGGCAC
CTGCTCCATTGCAGGGGCTAAGTGCCGCGGTCACCACCACTACCATCACT
CGAAGCTCCTCCCAAAGCAAGGCCGGGCCACTGCCGTCATCATCCCTGTC
AAGTGCCTCGAGTTCTTCATCCTCAGCGGCCGCTGCCAGAAGTGGAGATG
ACGAAGGTGCTTCGGGTATTGTAGCAGGCATGGAAGTGAACACCCCGTCA
TTCACTTTCTCCACTCCCCAGGACGGGTTGCCGCATCCGCAGTGCACTCC
TATAGCCTTCTACAATTCTGAAGCTCCCTATGGGAGCGGTCGGCTAATCG
CAGTCTCCGATGCGTACATATGTTACGCCATCAAGGACGGCCACATCCGA
GGGATCAATCGGCAGACGGTGCAGCGCACTTTACTCAAGGGTCATAAGAA
ACCCATCATTGACATGGCATTCGCGAGCCGGTCTACGTGTATGCTCGGGT
CTTTGGGTGGAGACGGCTCTTTTTACCTGTGGACAATCACGGAATCGGCC
GCAGACAAAAGCTTGACGTCGGTGCCCCTTTTGGCCGTAACAGGAGTGGA
TCTGCAGCGGGTCGTCTGGCATCCCAAGCAAGTACACATGCTAGCCGTGG
TGGCTCCCAAGGGAGAAATTGCCTTGATCAACACCCAAAAGCTTATTCAG
CAGAGAGGGGGCCGGGTCGGAGATCCCGCCAAAGTAGTCGCGGCCACAGG
ACTTGCTGACCTGATGCCGGAGTGGTGCCTGACGGCCGCAAACCAGTGCT
TGGACCTGAGTTTTTCCAAGGACGGGAAGTACCTGGTCACAGCCGGGGAA
GACGGCTGGGTCCGTGTGTGGGAAGTGGAGTCTCAGGTGGCGATGGGGCG
ATGGCAGCCATACCGGGGGGAGCCGGTCTCCCGGGCCTTGTTTTTACACC
GGACAGGGGGGCCGGCGACCGGGGAGAAGGTCTTCGTGGTCACGGGCGGG
AAGCAAGCGAGCGAGATCAAGCTTTTCCGGGCCTGGACCACGCTCTCGCC
CATCAACACCCAGACACTGACCTTCGCCCCTCCCCCCCCCGACCGGGACG
CGGGCAGGGGCACTCGCGCTTTCCACTTGGAGGTGGACCAGACGGGGGAG
TTCCTGTTGCTCGCCGACGCCGCCCGGCCTTTGCTCTACGTCGCCCACGT
GGTGTTGGGACCTAGCACGGCCAAAGTGGACCGACTGACCCCCTACCAAT
TGAAACACCCCGTGCTGAGTCTGTCGGCACTCGAGGGGGTGGGGGTGGAC
GCTCACGAAGGCCGGTCGGGCCGGTCGGGGGCCTCTGAGATCCATGCGTA
CTGTGTGCAAACGCAAGCGATCCAATTTTACCACCTGCGGCCGAAAGACT
GCCTGCCAAGCGCCAGCACCCTTCCCAACACCGGCTCTGCGGATGCCACT
GCTCCCGTAGGACGCTCCGAGCCGCCCTCCCCGAACCCCTCACCTCCGTC
GCAGCCGCCTGCCATCCTCCAAATGCTCATGCAAGCCAGCCAGGCGGCAG
GAAGCAGCAGCAGCACGACCGACCCTCTGAAGGCCCAGTCCTTGGCTTCG
GGGAGTGGGCGCCGGGCATGGGAGGCAGCGAGCACACATAGCGTGGCGGC
GTCAGGCACGGAGGAGAGGCAGACAGGCGGGACGCATACGACCGAGGAGA
AGATCCTGGGCAATGCAAACGCCGGTGGGGGTGGGGAGGATGCGGGGGAG
GCGAGCGGGGGACAGAGCGGGCAGGCGGCTTCGGGCCAAGCGAGTCAAGA
CGTTGGGGGGGCATCGCTTCCTCTCTCTCGATCTCCGTCGGAGGGGTCCT
CCGCGACACCCGTCGTTTCAGTCCACACGCCGTCCAGCGGGCGGGCGCCT
GCAAGACGGACGCTTTCGGGCGAGGGAAGCGGGAGGAAAGGGGCACCGGA
GCCTGGGGGAAGGGCCGATATGGAGGCAGGGATGGGGGAGGTGGTAAGCC
GGAGGACCAAGGAGGCGATTGCCGAGGCCATGGGGGGGGTGGAGGAGAGA
ATTGCGAGGGCAATCAAAAGCGTGATTGCGGCAGAGCTGGGCGACGTCCC
GGGTCAAGTCAAAGGGGCAGTCGTGGCGGGGCTGGGCCAGGCGGTGAAAG
ATCCCATCAGCAGCTCTTTCAAGCAGTGCTTCCAAGACATGTTGATACCG
GCCATGCAAAGCACGACGCAACGGATGTTCGCGCAGATGAAGGAGGGTCT
GAGCAAGAACATCGCTGCCGCACGATCCGATGCAGGGCCGGGGCAGGGCC
TGAACGGCGCGGGAGCCGCGGCGCTGACCGAGGTCAAGGGCGAGTTGGCT
CAGGTGCGCACCGAGCTAGCCTCGTTCTCGTCGGCGCTGGGAGCCCTCTC
CGCTCAACTATCAGCGCTAAGTTCTCGCATGGAGAACGGTGACACCGTGG
GGTTTGCGGGCGGCTTTGGGGGGGGATGGCTTGGGAGGGGGGCTGGCAGG
GGGGGGTCGGAGGCGGTCCCCGCCGCGTCCGCTTCGATCGTCCCCGGGGG
GCGTAAAGAGGAATTGCTGCGCGATGTACGGGCAGGACGTTTCGAGGACG
TTTTTGTCAGCGTGCTCTCCTCTCAGGACCTGGACCTGCTCCTCTGGCTC
TGCTCGGAAGCCCCCAAGGACGACATCTTTGACTCTGAACCACCCATGCT
CTCTCAGCCTACCATGTTTTGCCTTCTACAGCAGCTGACTTTCCAGCTGG
GGAAACACACAGCACAGAAACTTGAATGGATGCAAGAGTTGGTCCTGGCG
GTTGATCCCAAGGACGCGGTTATCGGTTCGTATCTTGGGGAGGTGTGTCC
AGAACTCATCAGGAACTTCAACGAGGCGGCACCTGAAGTGGCAGCGTTGG
GTCACCCCCAGCTTGTAAAAGACTTTAAAATGGTTCAGAAAGCAATTCAA
AACCTGGCTCGGGGTTCCTGA

protein sequence of rna5719

>rna5719-protein ID=rna5719-protein|Name=rna5719|organism=Nannochloropsis gaditana|type=polypeptide|length=663bp
MYTGRVRRTDKLSHPLQLLLLLMLQFSAAQRICPAAGAQATSTFVSFSKT
RPENCLQRPRASLPRKQALPLSVTPVTSPVPENETSSWLLDHVEACLKGP
CRLSDSRGSAPAHHVVIAVSGGADSMALLHLLTRIRKRWEPPLKLTVAHF
NHGLRPEAVKEEAFVLDAAARLGVPVHTASWQEEERSKSAGVQARAREWR
RQECERLLQEERISGRWQRGKGKEGGAVGEREERGDGSEKEGAQGVIATA
HHADDSLETWVLKLLRGAHISHLRGMEPRAGPYVKPLLHLPKTRLVRFLE
KEGLAWEEDASNQTEKYKRNKVRLRLLPLMAELAGGEEALKARMEEMAEQ
SRGLEDWVVRAAREWEARHSAMAPLDVVDAGIELWLGPPVRSPLPSALSS
SSPPGSSSAQALSAPSFPSPVSPFSASEPLWAPLPRLLQEELLHRLAARA
SNGAVSLSYAQIRRAMEQLQRDEDEAQGGHKKKLQWRLEMGNGWLLVRQG
QVLRLVQEQAHRNPKGIWQPENFPVSLPDAGVECLLPTGWQISASRLSAS
PSSSSSTAPGWSMVLPHVPTGARLRLRHRQEGDRFHPPWRQSPVKLKDFL
RAQNVPLHRRDEVMLVVLLSNGPLGVKEEVIGLHPLGCVAAPSLDSQATN
SALEPLAIRLMKA

mRNA from alignment at CM002466.1:665348..667339-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5719 ID=rna5719|Name=rna5719|organism=Nannochloropsis gaditana|type=mRNA|length=1992bp|location=Sequence derived from alignment at CM002466.1:665348..667339- (Nannochloropsis gaditana)
ATGTACACGGGGAGGGTGCGTCGTACAGATAAACTATCCCATCCGCTTCA
GCTCCTCCTCTTGCTCATGTTGCAATTCTCGGCCGCTCAACGTATATGCC
CGGCAGCGGGTGCACAAGCGACGTCAACCTTCGTTTCATTTTCGAAGACT
AGACCTGAAAACTGTCTGCAGAGACCTCGCGCTTCTCTGCCCCGCAAGCA
AGCCCTTCCATTGTCCGTCACACCCGTCACTTCCCCTGTCCCCGAGAACG
AGACGTCGAGCTGGCTACTTGACCATGTGGAGGCCTGTCTCAAAGGGCCT
TGTAGGTTATCCGACTCGCGGGGGAGTGCCCCGGCCCATCATGTCGTGAT
CGCCGTCTCGGGAGGCGCTGATTCCATGGCGCTGCTCCATCTTCTGACCC
GTATTCGCAAGCGATGGGAGCCCCCCTTGAAGCTGACGGTGGCACACTTC
AACCACGGACTGCGCCCAGAGGCCGTAAAGGAAGAAGCGTTCGTCCTAGA
CGCGGCGGCGAGGCTGGGGGTCCCCGTTCACACGGCAAGCTGGCAAGAAG
AGGAGCGGTCCAAGAGTGCGGGCGTTCAGGCGCGCGCGCGGGAATGGCGG
CGACAGGAATGCGAGCGGCTGCTCCAGGAAGAGAGAATTAGTGGACGGTG
GCAAAGGGGGAAGGGAAAGGAGGGTGGGGCGGTGGGCGAGCGAGAGGAGA
GGGGGGATGGGAGCGAAAAGGAAGGGGCTCAGGGCGTCATCGCCACGGCT
CACCACGCGGACGACTCTCTGGAGACATGGGTCCTGAAGCTGCTGCGCGG
CGCGCACATCAGCCACCTACGGGGCATGGAGCCTCGGGCAGGCCCATACG
TCAAGCCGCTGTTGCACCTTCCCAAGACCCGCCTGGTTCGGTTTCTAGAA
AAAGAAGGTCTGGCATGGGAGGAAGACGCCTCCAACCAGACGGAGAAGTA
CAAGCGGAACAAGGTGCGCCTCCGGTTGTTGCCTTTGATGGCAGAGCTGG
CGGGGGGGGAGGAGGCGCTGAAGGCACGCATGGAAGAGATGGCGGAGCAG
AGCCGGGGCTTGGAGGACTGGGTGGTCCGGGCGGCGAGGGAGTGGGAGGC
GCGTCACAGCGCCATGGCCCCTCTTGACGTGGTGGATGCAGGAATCGAGC
TCTGGTTGGGCCCTCCTGTCCGCTCTCCCCTCCCCTCTGCCCTGTCTTCT
TCCTCGCCCCCCGGGTCGTCGTCCGCTCAGGCGTTATCAGCGCCCTCCTT
TCCTTCGCCGGTGTCTCCCTTTTCGGCCTCCGAGCCGCTCTGGGCCCCAC
TGCCGCGCTTGCTTCAAGAAGAGCTGCTGCATCGCCTTGCCGCCAGGGCA
AGTAATGGTGCAGTCAGCCTCTCCTACGCTCAGATACGTCGCGCCATGGA
GCAGCTTCAAAGGGACGAAGACGAGGCCCAGGGGGGACACAAAAAGAAGC
TGCAGTGGCGATTGGAGATGGGGAATGGATGGTTGTTGGTCCGACAAGGG
CAAGTGCTTCGGTTGGTTCAAGAGCAAGCCCATAGGAACCCCAAGGGGAT
CTGGCAGCCGGAAAACTTTCCAGTCTCGCTGCCGGATGCGGGCGTGGAGT
GCTTGCTCCCCACAGGGTGGCAAATTTCGGCCTCACGCCTGTCGGCATCT
CCCTCTTCTTCCTCGTCCACCGCCCCGGGGTGGAGCATGGTCCTTCCTCA
CGTTCCCACAGGGGCCCGGCTCCGGCTCCGGCATCGTCAAGAAGGCGATC
GATTTCATCCACCGTGGCGACAGAGCCCTGTAAAGCTCAAGGATTTCCTG
AGGGCCCAGAATGTTCCTTTGCATCGGCGGGATGAGGTGATGCTTGTTGT
GCTGCTCTCAAACGGTCCTCTGGGCGTCAAGGAGGAGGTAATCGGCTTGC
ACCCGCTGGGTTGTGTAGCGGCACCATCTTTGGATTCGCAAGCAACAAAT
TCAGCATTGGAACCCTTAGCTATACGATTGATGAAAGCGTAG

Coding sequence (CDS) from alignment at CM002466.1:665348..667339-

>rna5719 ID=rna5719|Name=rna5719|organism=Nannochloropsis gaditana|type=CDS|length=1992bp|location=Sequence derived from alignment at CM002466.1:665348..667339- (Nannochloropsis gaditana)
ATGTACACGGGGAGGGTGCGTCGTACAGATAAACTATCCCATCCGCTTCA
GCTCCTCCTCTTGCTCATGTTGCAATTCTCGGCCGCTCAACGTATATGCC
CGGCAGCGGGTGCACAAGCGACGTCAACCTTCGTTTCATTTTCGAAGACT
AGACCTGAAAACTGTCTGCAGAGACCTCGCGCTTCTCTGCCCCGCAAGCA
AGCCCTTCCATTGTCCGTCACACCCGTCACTTCCCCTGTCCCCGAGAACG
AGACGTCGAGCTGGCTACTTGACCATGTGGAGGCCTGTCTCAAAGGGCCT
TGTAGGTTATCCGACTCGCGGGGGAGTGCCCCGGCCCATCATGTCGTGAT
CGCCGTCTCGGGAGGCGCTGATTCCATGGCGCTGCTCCATCTTCTGACCC
GTATTCGCAAGCGATGGGAGCCCCCCTTGAAGCTGACGGTGGCACACTTC
AACCACGGACTGCGCCCAGAGGCCGTAAAGGAAGAAGCGTTCGTCCTAGA
CGCGGCGGCGAGGCTGGGGGTCCCCGTTCACACGGCAAGCTGGCAAGAAG
AGGAGCGGTCCAAGAGTGCGGGCGTTCAGGCGCGCGCGCGGGAATGGCGG
CGACAGGAATGCGAGCGGCTGCTCCAGGAAGAGAGAATTAGTGGACGGTG
GCAAAGGGGGAAGGGAAAGGAGGGTGGGGCGGTGGGCGAGCGAGAGGAGA
GGGGGGATGGGAGCGAAAAGGAAGGGGCTCAGGGCGTCATCGCCACGGCT
CACCACGCGGACGACTCTCTGGAGACATGGGTCCTGAAGCTGCTGCGCGG
CGCGCACATCAGCCACCTACGGGGCATGGAGCCTCGGGCAGGCCCATACG
TCAAGCCGCTGTTGCACCTTCCCAAGACCCGCCTGGTTCGGTTTCTAGAA
AAAGAAGGTCTGGCATGGGAGGAAGACGCCTCCAACCAGACGGAGAAGTA
CAAGCGGAACAAGGTGCGCCTCCGGTTGTTGCCTTTGATGGCAGAGCTGG
CGGGGGGGGAGGAGGCGCTGAAGGCACGCATGGAAGAGATGGCGGAGCAG
AGCCGGGGCTTGGAGGACTGGGTGGTCCGGGCGGCGAGGGAGTGGGAGGC
GCGTCACAGCGCCATGGCCCCTCTTGACGTGGTGGATGCAGGAATCGAGC
TCTGGTTGGGCCCTCCTGTCCGCTCTCCCCTCCCCTCTGCCCTGTCTTCT
TCCTCGCCCCCCGGGTCGTCGTCCGCTCAGGCGTTATCAGCGCCCTCCTT
TCCTTCGCCGGTGTCTCCCTTTTCGGCCTCCGAGCCGCTCTGGGCCCCAC
TGCCGCGCTTGCTTCAAGAAGAGCTGCTGCATCGCCTTGCCGCCAGGGCA
AGTAATGGTGCAGTCAGCCTCTCCTACGCTCAGATACGTCGCGCCATGGA
GCAGCTTCAAAGGGACGAAGACGAGGCCCAGGGGGGACACAAAAAGAAGC
TGCAGTGGCGATTGGAGATGGGGAATGGATGGTTGTTGGTCCGACAAGGG
CAAGTGCTTCGGTTGGTTCAAGAGCAAGCCCATAGGAACCCCAAGGGGAT
CTGGCAGCCGGAAAACTTTCCAGTCTCGCTGCCGGATGCGGGCGTGGAGT
GCTTGCTCCCCACAGGGTGGCAAATTTCGGCCTCACGCCTGTCGGCATCT
CCCTCTTCTTCCTCGTCCACCGCCCCGGGGTGGAGCATGGTCCTTCCTCA
CGTTCCCACAGGGGCCCGGCTCCGGCTCCGGCATCGTCAAGAAGGCGATC
GATTTCATCCACCGTGGCGACAGAGCCCTGTAAAGCTCAAGGATTTCCTG
AGGGCCCAGAATGTTCCTTTGCATCGGCGGGATGAGGTGATGCTTGTTGT
GCTGCTCTCAAACGGTCCTCTGGGCGTCAAGGAGGAGGTAATCGGCTTGC
ACCCGCTGGGTTGTGTAGCGGCACCATCTTTGGATTCGCAAGCAACAAAT
TCAGCATTGGAACCCTTAGCTATACGATTGATGAAAGCGTAG

Synonyms

Publications