EWM24970.1, cds5704 (CDS) Nannochloropsis gaditana

Overview
NameEWM24970.1
Unique Namecds5704
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:665348..667339 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24970.1
Producttrna -lysidine synthetase
Orig transcript idgnl|cribi|Naga_100186g4.5609.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:665348..667339 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0008033tRNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
GO:0016879ligase activity, forming carbon-nitrogen bonds
GO:0000166nucleotide binding
GO:0005524ATP binding
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR020825Phe-tRNA_synthase_B3/B4
IPR012094tRNA_Ile_lys_synt
IPR012795tRNA_Ile_lys_synt_N
IPR014729Rossmann-like_a/b/a_fold
IPR011063tRNA-lysidine/thiocyt_synth
IPR012796Lysidine-tRNA-synth_C
Homology
BLAST of EWM24970.1 vs. NCBI_GenBank
Match: gi|585106602|gb|EWM24970.1| (trna -lysidine synthetase [Nannochloropsis gaditana])

HSP 1 Score: 1323.15 bits (3423), Expect = 0.000e+0
Identity = 663/663 (100.00%), Postives = 663/663 (100.00%), Query Frame = 0
Query:    1 MYTGRVRRTDKLSHPLQLLLLLMLQFSAAQRICPAAGAQATSTFVSFSKTRPENCLQRPRASLPRKQALPLSVTPVTSPVPENETSSWLLDHVEACLKGPCRLSDSRGSAPAHHVVIAVSGGADSMALLHLLTRIRKRWEPPLKLTVAHFNHGLRPEAVKEEAFVLDAAARLGVPVHTASWQEEERSKSAGVQARAREWRRQECERLLQEERISGRWQRGKGKEGGAVGEREERGDGSEKEGAQGVIATAHHADDSLETWVLKLLRGAHISHLRGMEPRAGPYVKPLLHLPKTRLVRFLEKEGLAWEEDASNQTEKYKRNKVRLRLLPLMAELAGGEEALKARMEEMAEQSRGLEDWVVRAAREWEARHSAMAPLDVVDAGIELWLGPPVRSPLPSALSSSSPPGSSSAQALSAPSFPSPVSPFSASEPLWAPLPRLLQEELLHRLAARASNGAVSLSYAQIRRAMEQLQRDEDEAQGGHKKKLQWRLEMGNGWLLVRQGQVLRLVQEQAHRNPKGIWQPENFPVSLPDAGVECLLPTGWQISASRLSASPSSSSSTAPGWSMVLPHVPTGARLRLRHRQEGDRFHPPWRQSPVKLKDFLRAQNVPLHRRDEVMLVVLLSNGPLGVKEEVIGLHPLGCVAAPSLDSQATNSALEPLAIRLMKA 663
            MYTGRVRRTDKLSHPLQLLLLLMLQFSAAQRICPAAGAQATSTFVSFSKTRPENCLQRPRASLPRKQALPLSVTPVTSPVPENETSSWLLDHVEACLKGPCRLSDSRGSAPAHHVVIAVSGGADSMALLHLLTRIRKRWEPPLKLTVAHFNHGLRPEAVKEEAFVLDAAARLGVPVHTASWQEEERSKSAGVQARAREWRRQECERLLQEERISGRWQRGKGKEGGAVGEREERGDGSEKEGAQGVIATAHHADDSLETWVLKLLRGAHISHLRGMEPRAGPYVKPLLHLPKTRLVRFLEKEGLAWEEDASNQTEKYKRNKVRLRLLPLMAELAGGEEALKARMEEMAEQSRGLEDWVVRAAREWEARHSAMAPLDVVDAGIELWLGPPVRSPLPSALSSSSPPGSSSAQALSAPSFPSPVSPFSASEPLWAPLPRLLQEELLHRLAARASNGAVSLSYAQIRRAMEQLQRDEDEAQGGHKKKLQWRLEMGNGWLLVRQGQVLRLVQEQAHRNPKGIWQPENFPVSLPDAGVECLLPTGWQISASRLSASPSSSSSTAPGWSMVLPHVPTGARLRLRHRQEGDRFHPPWRQSPVKLKDFLRAQNVPLHRRDEVMLVVLLSNGPLGVKEEVIGLHPLGCVAAPSLDSQATNSALEPLAIRLMKA
Sbjct:    1 MYTGRVRRTDKLSHPLQLLLLLMLQFSAAQRICPAAGAQATSTFVSFSKTRPENCLQRPRASLPRKQALPLSVTPVTSPVPENETSSWLLDHVEACLKGPCRLSDSRGSAPAHHVVIAVSGGADSMALLHLLTRIRKRWEPPLKLTVAHFNHGLRPEAVKEEAFVLDAAARLGVPVHTASWQEEERSKSAGVQARAREWRRQECERLLQEERISGRWQRGKGKEGGAVGEREERGDGSEKEGAQGVIATAHHADDSLETWVLKLLRGAHISHLRGMEPRAGPYVKPLLHLPKTRLVRFLEKEGLAWEEDASNQTEKYKRNKVRLRLLPLMAELAGGEEALKARMEEMAEQSRGLEDWVVRAAREWEARHSAMAPLDVVDAGIELWLGPPVRSPLPSALSSSSPPGSSSAQALSAPSFPSPVSPFSASEPLWAPLPRLLQEELLHRLAARASNGAVSLSYAQIRRAMEQLQRDEDEAQGGHKKKLQWRLEMGNGWLLVRQGQVLRLVQEQAHRNPKGIWQPENFPVSLPDAGVECLLPTGWQISASRLSASPSSSSSTAPGWSMVLPHVPTGARLRLRHRQEGDRFHPPWRQSPVKLKDFLRAQNVPLHRRDEVMLVVLLSNGPLGVKEEVIGLHPLGCVAAPSLDSQATNSALEPLAIRLMKA 663          
BLAST of EWM24970.1 vs. NCBI_GenBank
Match: gi|553182411|ref|XP_005853726.1| (hypothetical protein NGA_2025700, partial [Nannochloropsis gaditana CCMP526] >gi|422295334|gb|EKU22633.1| hypothetical protein NGA_2025700, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 672.544 bits (1734), Expect = 0.000e+0
Identity = 340/340 (100.00%), Postives = 340/340 (100.00%), Query Frame = 0
Query:  324 LRLLPLMAELAGGEEALKARMEEMAEQSRGLEDWVVRAAREWEARHSAMAPLDVVDAGIELWLGPPVRSPLPSALSSSSPPGSSSAQALSAPSFPSPVSPFSASEPLWAPLPRLLQEELLHRLAARASNGAVSLSYAQIRRAMEQLQRDEDEAQGGHKKKLQWRLEMGNGWLLVRQGQVLRLVQEQAHRNPKGIWQPENFPVSLPDAGVECLLPTGWQISASRLSASPSSSSSTAPGWSMVLPHVPTGARLRLRHRQEGDRFHPPWRQSPVKLKDFLRAQNVPLHRRDEVMLVVLLSNGPLGVKEEVIGLHPLGCVAAPSLDSQATNSALEPLAIRLMKA 663
            LRLLPLMAELAGGEEALKARMEEMAEQSRGLEDWVVRAAREWEARHSAMAPLDVVDAGIELWLGPPVRSPLPSALSSSSPPGSSSAQALSAPSFPSPVSPFSASEPLWAPLPRLLQEELLHRLAARASNGAVSLSYAQIRRAMEQLQRDEDEAQGGHKKKLQWRLEMGNGWLLVRQGQVLRLVQEQAHRNPKGIWQPENFPVSLPDAGVECLLPTGWQISASRLSASPSSSSSTAPGWSMVLPHVPTGARLRLRHRQEGDRFHPPWRQSPVKLKDFLRAQNVPLHRRDEVMLVVLLSNGPLGVKEEVIGLHPLGCVAAPSLDSQATNSALEPLAIRLMKA
Sbjct:    1 LRLLPLMAELAGGEEALKARMEEMAEQSRGLEDWVVRAAREWEARHSAMAPLDVVDAGIELWLGPPVRSPLPSALSSSSPPGSSSAQALSAPSFPSPVSPFSASEPLWAPLPRLLQEELLHRLAARASNGAVSLSYAQIRRAMEQLQRDEDEAQGGHKKKLQWRLEMGNGWLLVRQGQVLRLVQEQAHRNPKGIWQPENFPVSLPDAGVECLLPTGWQISASRLSASPSSSSSTAPGWSMVLPHVPTGARLRLRHRQEGDRFHPPWRQSPVKLKDFLRAQNVPLHRRDEVMLVVLLSNGPLGVKEEVIGLHPLGCVAAPSLDSQATNSALEPLAIRLMKA 340          
BLAST of EWM24970.1 vs. NCBI_GenBank
Match: gi|551653772|ref|XP_005829663.1| (hypothetical protein GUITHDRAFT_164075 [Guillardia theta CCMP2712] >gi|428173783|gb|EKX42683.1| hypothetical protein GUITHDRAFT_164075 [Guillardia theta CCMP2712])

HSP 1 Score: 199.904 bits (507), Expect = 2.358e-52
Identity = 151/535 (28.22%), Postives = 238/535 (44.49%), Query Frame = 0
Query:  115 VVIAVSGGADSMALLHLLTRIRKRWEP----PLKLTVAHFNHGLRPEAVKEEAFVLDAAARLGVPVHTASWQEEE----RSKSAGVQARAREWRRQECERLLQEERISGRWQRGKGKEGGAVGEREERGDGSEKEGAQGVIATAHHADDSLETWVLKLLRGAHISHLRGMEPRAG---PYVKPLLHLPKTRLVRFLEKEGLAWEEDASNQTEKYKRNKVRLRLLPLMAELAGGEEALKARMEEMAEQSRGLEDWV------VRAAREWEARHSAMAPLDVVDAGIELWLGPPVRSPLPSALSSSSPPGSSSAQALSAPSFPSPVSPFSASEPLWAPLPRLLQEELLHRLAARASNGAVSLSYAQIRRAMEQLQRDEDEAQGGHKKKLQWRLEMGNGWLLVRQGQVLRLVQEQAHRNPKGIWQPENFPVSLPDAGVECL--LPTGWQISA--SRLSASPSSSSSTAPGWSMVLP--------HVPTGARLRLRHRQEGDRFHPPWRQSPVKLKDFLRAQNVPLHRRDEVMLVVLLS 620
            +V+ VSGG+DS AL+ LL  +R+  E      L + V HF+HGLR E+ +E  FV   A   G+P +  +  E +    R  S G+Q   R WRR+                         +GE   +     +   +  + +AHH+DD LET ++KLLRGAHIS L GM+ +     P ++PLL + K  LVR+L+     W ED+SN    YKRNKVR++L+PL+ +L GG+ AL +RM  ++ QS  L+ W+      ++  R ++ R     PLD                                                      +A    LL+  ++H+  +  ++  + LSY Q+ +  +QL+         H   L W L++G GW ++R G +L + +E+                 LP+  V+ L  +  G ++    S +  +         G   VLP        +VP G+++ +R +  GDRF P       +LK FLR Q +P+  RDE+ L+   S
Sbjct:   90 LVVGVSGGSDSTALMLLLDEVRQEHEGGEEGQLSINVVHFDHGLRAESKEEAKFVEGLARDRGMPFYMQALDEADAARFRENSGGMQEYTRIWRRK------------------------VMGEVAAKIKEQSRPDTKVYLVSAHHSDDQLETILMKLLRGAHISKLHGMKYKDDLDPPMLRPLLDISKQELVRYLKDLQQDWREDSSNHESTYKRNKVRIQLIPLLQDLCGGKHALASRMNGLSHQSMQLQQWMEEVTPAIKFGRRFDKR---TLPLDF----------------------------------------------------FYAESRELLRNSVIHQFISSEASDLI-LSYTQLLKIAQQLEE--------HPNNLNWSLDLGKGWQVLRSGPLLMVDREEG---------------ELPNGSVDILGDVNVGVEVDGPWSVMVTAGQKPPPPVEGKRRVLPEDVCFTIHNVPAGSQMIVRTKLAGDRFFPKGVGKDERLKHFLRFQRIPVKERDEIPLICFKS 521          
BLAST of EWM24970.1 vs. NCBI_GenBank
Match: gi|397590158|gb|EJK54930.1| (hypothetical protein THAOC_25393 [Thalassiosira oceanica])

HSP 1 Score: 198.364 bits (503), Expect = 1.329e-51
Identity = 161/556 (28.96%), Postives = 237/556 (42.63%), Query Frame = 0
Query:  111 PAHHVVIAVSGGADSMALLHLLTR-------------------IRKRWEPPLKLTVAHFNHGLRPEAVKEEAFVLDAAAR-LGVPVHTASWQ---------EEERSKSAGVQARAREWRRQECERLLQEERISGRWQRGKGKEGGAVGEREERGDGSEKEGAQGVIATAHHADDSLETWVLKLLRGAHISHLRGMEPRAGPY---------------VKPLLHLPKTRLVRFLEKEGLAWEEDASNQTEKYKRNKVRLRLLPLMAELAGGEEALKARMEEMAEQSRGL-EDWVVRAAREWEARHSAMAPLDVVDAGIELWLGPPVRSPLPSALSSSSPPGSSSAQALSAPSFPSPVSPFSASEPLWAPLPRLLQEELLHRLAARASNGAVSLSYAQIRRAMEQLQRDEDEAQGGHKKKLQWRLEMGNGWLLVRQGQVLRLVQEQAHRNPKGIWQPENFPVSLPDAGVECLLPTGWQISASRLSASPSSSSSTAPGWSMVLPHVPTGARLRLRHRQE-GD-RFHPPWRQSPVKLKDFLRAQNVPLHRRDEVMLVVLL 619
            P   +++AVSGG+DS+ALLH + R                   +   ++ P ++ VAHFNH  R E    +  ++++  R  G+P H   W          E   +K    Q  AR WRR+E + LL +   S                         K  A G I TAHH DD+ ET +LKLLRG+H+++L GME R+ P+               VKP L L KT++V FL      W ED SN + KYKRNK+R  L+PL++E+AGG+EA+  R   + +QSR +  D  +RA +           LD ++   E  L    R  L                                             EE LH   +RA+ G + L+Y Q+ R   Q+          H  +LQW L++G  W L R G  L + +E                    D G + + P  W +  SR     S       G  +    +  G+ L ++  ++ G+  F PPW+++P+K+ +FLR Q VPL RR E  +V L+
Sbjct:  112 PVVVLLLAVSGGSDSIALLHSVLRSVESSVIDDERTLCLKLGVVGDEYDVPCQVHVAHFNHEQRGENSDGDEMLVESLCRESGLPFHCYRWSDGSTCLESSEVNGNKDVFSQNTARRWRRRELKNLLSDLVPS-------------------------KGHAFGAILTAHHRDDADETILLKLLRGSHLTNLAGMEARSDPFELGGSDQRSRMLGYFVKPCLELRKTQIVDFLTSNSYEWREDESNSSNKYKRNKIRNELMPLLSEIAGGDEAIHTRFRNLEQQSREIGMDLALRAQQH----------LDEMNCDSEFRLDANGRFDLA-------------------------------------------HEEALHLWVSRATCGRLCLAYDQMTRIRGQILM--------HPTRLQWELDIGKRWRLKRNGDCLTVSREGQ------------------DDGTDLVRPMTWTVHPSR--ECYSEGDIGPDGVELAFDGIAEGSPLVVKRVKDIGNLSFKPPWKENPIKITEFLRGQRVPLSRRGEAEVVCLV 561          
BLAST of EWM24970.1 vs. NCBI_GenBank
Match: gi|223998234|ref|XP_002288790.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220975898|gb|EED94226.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 172.94 bits (437), Expect = 1.743e-42
Identity = 143/534 (26.78%), Postives = 233/534 (43.63%), Query Frame = 0
Query:  141 PPLKLTVAHFNHGLRPEAV-KEEAFVLDAAARLGVPVHTASWQE--------EERSKSAGVQARAREWRRQECERLLQEERISGRWQRGKGKEGGAVGEREERGDGSEKEGAQGVIATAHHADDSLETWVLKLLRGAHISHLRGMEPRA-----------------------GPYVKPLLHLPKTRLVRFLEKEGLAWEEDASNQTEKYKRNKVRLRLLPLMAELAGGEEALKARMEEMAEQSRGLEDWVVRAAREW--EARHSAMAPLDVVDAGIELWLGPPVRSPLPSALSSSSPPGSSSAQALSAPSFPSPVSPFSASEPLWAPLPRLLQEELLHRLAARASNGAVSLSYAQIRRAMEQLQRDEDEAQGGHKKKLQWRLEMGNGWLLVRQGQVLRLVQEQAHRNPKGIWQPENFPVSLPDAGVECLLPTGWQI-----SASRLSASPSSSSSTAPGWSM---VLPHVPTGARLRLRHRQEGD---RFHPPWR--QSPVKLKDFLRAQNVPLHRRDEVMLVVLLSNGPLGVK 627
            PPL L +A      R E+  ++E FV       G+P+H  SW +        ++ S  +  Q  AR WR+Q   RLL +  ++    RG               D SE+ GA   I TAHH DD  ET +LKLLRG+H+++L GM+ R+                       G + KP+L + K  ++ +L  + + W ED SN + KYKRNK+R  ++PL+ ELAGGE+AL+ R   + EQSR +   ++  A ++  +   +++  L ++D+ I                                                   L  L +EE LH    R ++  + +SY Q++R   QL          + ++LQW +++GN W + R G +  LV    H       + +N   +  D  +       W +     + S  S+S   + S      +    LP +   + L ++   + D    F PPWR  +SP+K+++FLR Q VPLH R E +++   +   + V+
Sbjct:  139 PPLVLVLA------RGESSDRDEGFVKALCQENGIPIHCYSWSDRNNTSANRKDDSSESFTQDVARTWRKQTLGRLLLDLVVTPNHYRGT--------------DTSERWGA---ILTAHHRDDVDETILLKLLRGSHLTNLWGMDARSDGFDLLALHDNDTVSKSPASTFTGYFAKPMLSIRKNDVLDYLNSQSIEWREDESNNSNKYKRNKIRNEVMPLLKELAGGEDALQKRFSNLEEQSRAISQHLLNRAEKYLLDMPSNSVFHLTILDSTI---------------------------------------------------LFDLEREEALHLWLTRVTDNELQISYEQMKRIRHQLNE--------YPERLQWTIDVGNSWRVSRNGDI--LVVSNRH-------EDDNIQTTEKDNQIH------WSVLRIENNDSSFSSSKQFTESEENAVELHFRSLPPMSDHSSLEIKRVNDIDGNATFLPPWRAGRSPIKVREFLRGQRVPLHCRGESLVLCYTAEPSIRVR 575          
BLAST of EWM24970.1 vs. NCBI_GenBank
Match: gi|1210511324|dbj|GAX29615.1| (tRNA(Ile)-lysidine synthase [Fistulifera solaris])

HSP 1 Score: 162.155 bits (409), Expect = 6.078e-39
Identity = 150/535 (28.04%), Postives = 221/535 (41.31%), Query Frame = 0
Query:  118 AVSGGADSMALLHLLTRIRKR-------WE---------PPLKLTVAHFNHGLRPEAVKEEAFVLDA-AARLGVPVHTASWQEEERSKSAGVQARAREWRRQECERLLQEERISGRWQRGKGKEGGAVGEREERGDGSEKEGAQGVIATAHHADDSLETWVLKLLRGAHISHLRGMEPRAGP-------YVKPLLHLPKTRLVRFLEKEGLAWEEDASNQTEKYKRNKVRLRLLPLMAELAGGEEALKARMEEMAEQSRGL-EDWVVRAAREWEARHSAMAPLDVVDAGIELWLGPPVRSPLPSALSSSSPPGSSSAQALSAPSFPSPVSPFSASEPLWAPLPRLLQEELLHRLAARASNGAVSLSYAQIRRAMEQLQRDEDE-AQGGHKKKLQWRLEMGNGWLLVRQGQVLRLVQEQAHRNPKGIWQPENFPVSLPDAGVECLLPTGWQISASRLSASPSSSSSTAPGWSMVLPHVPTGARLRL----RHRQEGDRFHPPWR--QSPVKLKDFLRAQNVPLHRRDEVMLVVLLS 620
             VSGG DS+AL H L  IR++       W+             L   HF+H  R E    +  +++A   +  VP  T  W +E     +  Q  AR WRR    + LQE  IS                         KE A G I TAHH DDS ET +LKLLRG+H++ L GM P           +V+PLL L K +L+ +L++    W ED SN+ + Y+RN+VR  L+PLM +L GG+ A + R++ M  QS+ L  D   R A                     L+     R                  Q  + PS      P          L  + +E L   ++    +G VS   +  +   EQLQR   + A   H++K  W L +G GW + R+G VLR+V+     +            S+       L+ T         SA P    +      + +P   T  ++          +     PPWR  +SP+ LK+FLR Q V LH R +  ++++++
Sbjct:   97 GVSGGCDSVALFHALQEIRQKDNSVNIPWKWTFVHNSSTTTFLLHAIHFDHQQRGENSTADRELVEALCQQYNVPCTTIFWNDEHHESFS--QENARNWRRSHMRQHLQE-LIS-------------------------KENATGFIVTAHHLDDSNETLLLKLLRGSHLTKLAGMNPIVTDEVDGNLYWVRPLLSLSKNQLMAYLQQNNYVWREDESNEKDIYQRNRVRNELIPLMKDLMGGDVAFQKRLDSMGAQSQKLRSDLTARVA---------------------LYFKENTR------------------QDTACPSRTILFIPKDTDR-----LDLVFEEALYDWVSC---HGVVSNCCSNHQFTYEQLQRLFRQLADYSHRRK--WSLNIGGGWDVQREGDVLRIVESSLSTD------------SVDRGHATQLVETA--------SALPEDWKNDCYYLQIQVPKEKTAKQINFVSTTSAYDDNLVITPPWRRGRSPLDLKEFLRGQKVALHNRKDAPVILMVN 534          
BLAST of EWM24970.1 vs. NCBI_GenBank
Match: gi|1129177218|gb|OLP85529.1| (tRNA(Ile)-lysidine synthase [Symbiodinium microadriaticum])

HSP 1 Score: 164.081 bits (414), Expect = 2.428e-38
Identity = 173/552 (31.34%), Postives = 244/552 (44.20%), Query Frame = 0
Query:  115 VVIAVSGGADSMALLHLLTRIRKRWEPPLKLTVAHFNHGLRPEAVKEEAFVLDAAARLGVPVHTA-SWQEEERSKSAGVQARAREWRRQECERLLQEERISGRWQRGKGKEGGAVGEREERGDGSEKEGAQGVIATAHHADDSLETWVLKLLRGAHISHLRGMEPRAGPYVKPLLHLPKTRLVRFLEKEGLAWEEDASNQTEKYKRNKVRLRLLPLMAELAGGEEALKARMEEMAEQSRGLEDWVVRAAREWEARHSAMAPLDVVDAGIELWLGPPVRSPLPSALSSSSPPGSSSAQALSAPSFPSPVSPFSASEPL--WAPLPRLLQEELLHRLAARASNGAVSLSYAQIRRAMEQLQRDEDEAQGGHKKKLQWRLEMGNGWLLVRQGQVLRLVQEQAHRNPKGIWQPENFPVSLPDAGVECLLPTGWQISASRLSASPSSSSSTAPGWSMVLPHVPTGARLRLRHRQEGDRFHPPW--RQSPVKLKDFL-RAQNVPLHRRDEVMLVVLLSNGPLGVKEEVIGLHPLGCVAAPSLDSQATNSALEPLAIRL 660
            +V+ VSGG+DS+ALL L++++ + +     L V HFNHGLR E+  EE+FV   A       H   +     ++ + G+QA AR WRRQE  +LL                        E  +GS   G+ G +  AHHADD +ET +LKLLRG H++ L GM    G + +PLL + K  L  FL+  G  W+EDASNQ   Y+RN++RL+L+PL+ EL GGE+AL  R E +AEQS  L   +  A +E                     +G P          + +P      + L   SF          E +  +  LP ++++ELL R  A        LSY  +R     L      A     +   W L  G+GW L +  +   LV      + +  W  E+  V      +    P G  +  +R   +  S S         L  VP  A + LR  Q GDRF P    R   +KL  FL R   VP   R      V+    P   + EV+    L C AA   D  ATNS+  P+ + +
Sbjct:  328 LVLCVSGGSDSVALLLLVSQVAQTY--GWNLHVLHFNHGLRQESASEESFVEGLALSADAKFHLRRADGAGLKAAAGGLQAAARAWRRQEALQLL------------------------ESLEGSAASGS-GAVLLAHHADDQVETQLLKLLRGGHLARLSGMNLMEGRFARPLLGIRKQELQAFLKSVGQEWKEDASNQEPVYQRNRIRLQLVPLLTELIGGEDALHGRFEALAEQSEQLSSMLEDACKE---------------------VGGPSFPESFGEHEAGAPEAQEMQRVLDISSFLG----LKVEELICCFGQLPEMVRQELLWRFVATGCGSM--LSYPAVRAIAGGL------ASKNSSEPFTWPL--GSGWQLRKMAKP-ELVLSHKEESQEEAWTVEDLRV------LHNFAP-GLSLRVAR-GGTLESHSEAGDSSCRFLLDVPLNATVALRGAQPGDRFCPGLSSRARAIKLTYFLHREMKVPTEAR--YGWPVIAIQAPR--QPEVVAA-VLPCFAAA--DFAATNSSRSPVLVEV 801          
BLAST of EWM24970.1 vs. NCBI_GenBank
Match: gi|922855884|gb|KOO24294.1| (tRNA -lysidine synthetase [Chrysochromulina sp. CCMP291])

HSP 1 Score: 159.458 bits (402), Expect = 4.445e-38
Identity = 107/248 (43.15%), Postives = 144/248 (58.06%), Query Frame = 0
Query:  115 VVIAVSGGADSMALLHLLTRIRKRWEPPLKLTVAHFNHGLRPEAVKEEAFVLDAAARLGVPVHTASWQEEERSKSAGVQARAREWRRQECERLLQEERISGRWQRGKGKEGGAVGEREERGDGSEKEGAQGVIATAHHADDSLETWVLKLLRGAHISHLRGMEPRAGPYVKPLLHLPKTRLVRFLEKEGLAWEEDASNQTEKYKRNKVRLRLLPLMAELAGGEEALKARMEEMAEQSRGLEDWVVRAA 362
            V+I+VSGG+DS+ALL +L  +  + +    L   HFNHG R E+ +EE FV   AA  GVP+H     E +R+ + GVQ R R WRR E   +L                  ++    E G G  +E  +G +   HHADD LET VLK LRG H+S+L GM  + GP+V+PLL   K+ LV +L   G  W EDASN   KYKRN+VRL+LLPL+ EL GG   L AR+  + +QS  L +W+ +A+
Sbjct:   10 VLISVSGGSDSVALLRVLVELNSQLQ--WDLAAVHFNHGFRRESEEEEVFVRSLAAEHGVPMHVRRLAEADRALANGVQERTRAWRRTESLAILS-----------------SLDAAPEHGSGG-REQPRGAVMLGHHADDQLETIVLKGLRGCHLSNLHGMRWQDGPFVRPLLGQRKSELVAYLRALGQEWREDASNAVPKYKRNRVRLQLLPLLEELTGG--GLHARIGVLEQQSAQLREWLHQAS 235          
BLAST of EWM24970.1 vs. NCBI_GenBank
Match: gi|551579381|ref|XP_005775249.1| (hypothetical protein EMIHUDRAFT_195201 [Emiliania huxleyi CCMP1516] >gi|485627193|gb|EOD22820.1| hypothetical protein EMIHUDRAFT_195201 [Emiliania huxleyi CCMP1516])

HSP 1 Score: 145.206 bits (365), Expect = 2.022e-33
Identity = 132/330 (40.00%), Postives = 174/330 (52.73%), Query Frame = 0
Query:   62 SLPRKQALPLSVTPVTS-PVPENETSSWLLDHVEACLKGPCRLSDSRGSAPAHHVVIAVSGGADSMALLHLLTRIRKRWEPPLKLTVAHFNHGLRPEAVKEEAFVLDAAARLGVPVHT----ASWQEEERSKSAGVQARAREWRRQECERLLQEERISGRWQRGKGKEGGAVGEREERGDGSEKEGAQGVIATAHHADD-----------SLETWVLKLLRGAHISHLRGMEPRAGPYVKPLLHLPKTRLVRFLEKEGLAWEEDASNQTEKYKRNKVRLRLLPLMAELAGGEEALKARMEEMAEQSRGLEDWVVRAAREWEARHSAMAPL 375
            SLPR+Q L  +++ V   PV E      LL  V   L      S   G+ P   +V++VSGG DS+ALLHLL  ++ RW   L+L V HFNHGLRPE+  EEAFV   A R  +PVH     A W+E   S+  G+Q R+REWRR E   LL E   +G  Q                 D +++ GA  ++A AHHADD           +    V  L  G    +LRGME RAG +V+PLL + K  L  +L   G  W EDA+N    YKRN++RL+LLPL+ EL GG   L AR+   +EQS  L +W+ +A       H++  PL
Sbjct:    9 SLPRRQRLSRALSAVAGGPVAE-----LLLPRVHTAL------SRDIGATPGQRLVVSVSGGCDSVALLHLLLALQPRWR--LRLHVLHFNHGLRPESGDEEAFVHALAERHSLPVHVRRLPAGWRE---SQPGGIQERSREWRRAESLALLDELDAAGPPQFSSAD-----------ADFADEPGAASLVALAHHADDQAGAAVLGGGGTRRVSVTCLGVGRRRRNLRGMEWRAGRFVRPLLGVRKEELSAYLGALGEGWREDATNAEPTYKRNRIRLQLLPLLEELTGG--GLLARLGAASEQSAQLREWLDQA-------HASNTPL 302          
BLAST of EWM24970.1 vs. NCBI_GenBank
Match: gi|1210516087|dbj|GAX24903.1| (tRNA(Ile)-lysidine synthase [Fistulifera solaris])

HSP 1 Score: 145.206 bits (365), Expect = 2.915e-33
Identity = 93/282 (32.98%), Postives = 135/282 (47.87%), Query Frame = 0
Query:   96 CLKGPCRLSDSRGSAPAHHVVIA-VSGGADSMALLHLLTRIRKR--------------WEPPLKLTVAHFNHGLRPEAVK-EEAFVLDAAARLGVPVHTASWQEEERSKSAGVQARAREWRRQECERLLQEERISGRWQRGKGKEGGAVGEREERGDGSEKEGAQGVIATAHHADDSLETWVLKLLRGAHISHLRGMEPRAGP-------YVKPLLHLPKTRLVRFLEKEGLAWEEDASNQTEKYKRNKVRLRLLPLMAELAGGEEALKARMEEMAEQSRGL 354
            CL    R+S+ + +     V++A +SGG DS+AL H L  I+++              +     L   HF+H  R E    +  FV     +  VP  T  W ++ +S  +  Q +AR WRR    R LQ+    G                           A G I TAHH DDS ET +LKLLRG+H++ L GM P           +V+PLL L K +L+ +L+  G  W ED SN+ + Y RN+VR  L+PLM ++ GG+ A + R++ M  QS+ L
Sbjct:   62 CLDILPRVSNRQNNTTI--VLLAGISGGCDSVALFHALQDIQQKDDSIPGSWTFVQNSYSITFLLHAIHFDHQQRGENSNADREFVEALCQQYNVPCTTVFWNDDHQSHESFSQEKARNWRRNHMRRRLQKLIADG--------------------------NATGFIVTAHHLDDSNETLLLKLLRGSHLTKLAGMAPIVTDEMNDNLYWVRPLLSLSKNQLIAYLQDNGYVWREDESNEKDIYLRNRVRNELIPLMKDVMGGDVAFQKRLDSMEAQSQKL 315          
The following BLAST results are available for this feature:
BLAST of EWM24970.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106602|gb|EWM24970.1|0.000e+0100.00trna -lysidine synthetase [Nannochloropsis gaditan... [more]
gi|553182411|ref|XP_005853726.1|0.000e+0100.00hypothetical protein NGA_2025700, partial [Nannoch... [more]
gi|551653772|ref|XP_005829663.1|2.358e-5228.22hypothetical protein GUITHDRAFT_164075 [Guillardia... [more]
gi|397590158|gb|EJK54930.1|1.329e-5128.96hypothetical protein THAOC_25393 [Thalassiosira oc... [more]
gi|223998234|ref|XP_002288790.1|1.743e-4226.78predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210511324|dbj|GAX29615.1|6.078e-3928.04tRNA(Ile)-lysidine synthase [Fistulifera solaris][more]
gi|1129177218|gb|OLP85529.1|2.428e-3831.34tRNA(Ile)-lysidine synthase [Symbiodinium microadr... [more]
gi|922855884|gb|KOO24294.1|4.445e-3843.15tRNA -lysidine synthetase [Chrysochromulina sp. CC... [more]
gi|551579381|ref|XP_005775249.1|2.022e-3340.00hypothetical protein EMIHUDRAFT_195201 [Emiliania ... [more]
gi|1210516087|dbj|GAX24903.1|2.915e-3332.98tRNA(Ile)-lysidine synthase [Fistulifera solaris][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5719rna5719Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications