rna5717, rna5717 (mRNA) Nannochloropsis gaditana

Overview
Namerna5717
Unique Namerna5717
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length770
Alignment locationCM002466.1:660085..661161 -

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Properties
Property NameValue
ProductProteasome, beta-type subunit, conserved site
Orig transcript idgnl|cribi|Naga_100186g6.5608.mrna
Orig protein idgnl|cribi|Naga_100186g6.5608
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:660085..661161 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100186g6gene5522Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5717rna5717-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM24969.1cds5702Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5717 ID=rna5717|Name=rna5717|organism=Nannochloropsis gaditana|type=mRNA|length=770bp
TGGAGCCTCATAAATCGACGTACTTCTCTATTTCTTATTACTCTTGTCCC
TAACCCCTTCGCCGTTCCAAAAATCGCGGTCTATAGAATACAGATCACAA
AGATGGCGGCCGACCTCCTCAAGAAGCCGTCTTCGACGTCGTCCCAGCAC
CAGAACAAAAAAGTGGAATGCGCAGACTCTCTTTTTGACTACCTTTTTGC
TGCAATGATCGATACTTTGCGCACAGGTGGTGATCAAGGCCCGCGAAAGG
AAGAGCTGTTGGCAGAGACAGTGCGGGCTATCGGATTTGACGTGGGCTAT
CGCTTGGCTGAGTCTATTGCACAGGGGCGAGTACTCGCGGCGGAGTCATT
GGAGGTGAATGTCATGAAGTTCATTTGCAAGGAATTTTGGATTGAAATAT
TCAAAAAGCAAATCGATAAGCTCCAGACAAACAACCAAGGGGTGTTTGTC
CTGCGGGACGCCAAATTTCGATGGCTAGCTCCCTTCACAGCCAACGATGA
GTCAACTCGACGGGCAGCGGCCACTGTATTGAATTTTCCGTGTGGACTGA
TAAAAGGCGCCTTGGAAAATCTCGGAATTAATTCCACGGTGCAGGCAGAA
GTGGCTCCTGCCGTGCCCTCATGCTCCTTCACCATTAAAATTAGACGGAG
CGGAAGTGGCAGCTCGAGCAGCGCTTCACTCTCCGCACGATGAGTCCAGA
ACAATTCAACCCTGTACAGAGCCATCTCAAAATCCACAGAAAAAAAAAAT
AAGGCATCGTGCTGCACAGA
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protein sequence of rna5717

>rna5717-protein ID=rna5717-protein|Name=rna5717|organism=Nannochloropsis gaditana|type=polypeptide|length=263bp
MTTHMKAQQSVPVPSIWSTEGAARLGSGATVTTSHDDGSIDHGVTQAPYE
RRFSPYDFNGGTCLAIAGKDFAVVAGDTRLSTGYEILSRNVPKLCKLTSK
TVLASAGCLTDVRTLQQVLDMRLRMYEHDNGKEISTPAVAQLLGNTLYYR
RFFPYYAFNVLAGVDDEGKGCVFSYDAVGSHERVEYSASGSGQAFVIPVM
DNIVGFKNRQDPKPEYTAADIVAICKDAFLTAGERDIYTGDAVTISVITA
AGVTTETFELKRD
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mRNA from alignment at CM002466.1:660085..661161-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5717 ID=rna5717|Name=rna5717|organism=Nannochloropsis gaditana|type=mRNA|length=1077bp|location=Sequence derived from alignment at CM002466.1:660085..661161- (Nannochloropsis gaditana)
ATGACCACACATATGAAGTAAGTTATCCTCTTTCCTTTATTTTCTTTCAC
TTCCGCTCGCTTACTCGTTCTCTATTTAAAACACTGGTGTAAGGGCGCAA
CAATCGGTCCCAGTTCCGTCCATCTGGTCTACTGAAGGAGCAGCCCGCCT
TGGTTCAGGAGCAACAGTAACGACAAGTCACGACGATGGCAGTATCGACC
ATGGTGTCACACAAGCACCCTACGAGCGCCGCTTCTCTCCATACGACTTC
AACGGCGGGTAAGCTACGACGGCTAACAAGTCTTCTTTCGTACTAAGGGG
GGCATATAGAGGAACCGGAGCATTTCAGCACACAAAAAGGATTACCCATG
GCAACGTCATTTCTCACTAACACAACCAAACAGTACGTGCCTCGCTATCG
CAGGCAAGGACTTCGCTGTGGTCGCAGGAGATACGCGCCTTAGCACGGGC
TATGAGATTTTGTCCCGGAACGTCCCCAAGCTATGCAAACTGTACGTATG
GCATTTGTATTGCCCTGCTTCCCTGTTCTTGTATGCCAGCTCAGTTTTTC
TCCACCATATCTTCCCCACGAATAGTACAAGCAAGACAGTGCTAGCCTCG
GCAGGTTGTCTTACGGACGTGCGGACCCTCCAACAGGTGCTTGACATGCG
CCTCCGCATGTACGAGCACGACAACGGGAAGGAAATCAGCACGCCCGCCG
TCGCGCAACTCTTGGGGAACACACTCTACTACAGGCGATTTTTCCCTTAC
TATGCCTTCAACGTCTTGGCGGGGGTGGATGACGAGGGTAAAGGCTGCGT
CTTCTCCTATGACGCGGTGGGCTCGCATGAACGGGTTGAATACTCGGCCA
GCGGGTCGGGGCAGGCGTTCGTCATCCCCGTGATGGACAACATCGTGGGC
TTCAAGAACAGACAGGACCCGAAGCCCGAGTACACTGCCGCGGACATCGT
GGCGATTTGCAAGGACGCCTTTTTGACGGCGGGCGAGCGCGACATCTACA
CTGGAGATGCCGTTACCATAAGCGTCATTACCGCGGCCGGCGTAACCACT
GAGACGTTTGAGTTAAAACGCGACTAG
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Coding sequence (CDS) from alignment at CM002466.1:660085..661161-

>rna5717 ID=rna5717|Name=rna5717|organism=Nannochloropsis gaditana|type=CDS|length=3168bp|location=Sequence derived from alignment at CM002466.1:660085..661161- (Nannochloropsis gaditana)
TACAAGCAAGACAGTGCTAGCCTCGGCAGGTTGTCTTACGGACGTGCGGA
CCCTCCAACAGGTGCTTGACATGCGCCTCCGCATGTACGAGCACGACAAC
GGGAAGGAAATCAGCACGCCCGCCGTCGCGCAACTCTTGGGGAACACACT
CTACTACAGGCGATTTTTCCCTTACTATGCCTTCAACGTCTTGGCGGGGG
TGGATGACGAGGGTAAAGGCTGCGTCTTCTCCTATGACGCGGTGGGCTCG
CATGAACGGGTTGAATACTCGGCCAGCGGGTCGGGGCAGGCGTTCGTCAT
CCCCGTGATGGACAACATCGTGGGCTTCAAGAACAGACAGGACCCGAAGC
CCGAGTACACTGCCGCGGACATCGTGGCGATTTGCAAGGACGCCTTTTTG
ACGGCGGGCGAGCGCGACATCTACACTGGAGATGCCGTTACCATAAGCGT
CATTACCGCGGCCGGCGTAACCACTGAGACGTTTGAGTTAAAACGCGACT
AGTACGTGCCTCGCTATCGCAGGCAAGGACTTCGCTGTGGTCGCAGGAGA
TACGCGCCTTAGCACGGGCTATGAGATTTTGTCCCGGAACGTCCCCAAGC
TATGCAAACTGGCGCAACAATCGGTCCCAGTTCCGTCCATCTGGTCTACT
GAAGGAGCAGCCCGCCTTGGTTCAGGAGCAACAGTAACGACAAGTCACGA
CGATGGCAGTATCGACCATGGTGTCACACAAGCACCCTACGAGCGCCGCT
TCTCTCCATACGACTTCAACGGCGGATGACCACACATATGAATACAAGCA
AGACAGTGCTAGCCTCGGCAGGTTGTCTTACGGACGTGCGGACCCTCCAA
CAGGTGCTTGACATGCGCCTCCGCATGTACGAGCACGACAACGGGAAGGA
AATCAGCACGCCCGCCGTCGCGCAACTCTTGGGGAACACACTCTACTACA
GGCGATTTTTCCCTTACTATGCCTTCAACGTCTTGGCGGGGGTGGATGAC
GAGGGTAAAGGCTGCGTCTTCTCCTATGACGCGGTGGGCTCGCATGAACG
GGTTGAATACTCGGCCAGCGGGTCGGGGCAGGCGTTCGTCATCCCCGTGA
TGGACAACATCGTGGGCTTCAAGAACAGACAGGACCCGAAGCCCGAGTAC
ACTGCCGCGGACATCGTGGCGATTTGCAAGGACGCCTTTTTGACGGCGGG
CGAGCGCGACATCTACACTGGAGATGCCGTTACCATAAGCGTCATTACCG
CGGCCGGCGTAACCACTGAGACGTTTGAGTTAAAACGCGACTAGTACGTG
CCTCGCTATCGCAGGCAAGGACTTCGCTGTGGTCGCAGGAGATACGCGCC
TTAGCACGGGCTATGAGATTTTGTCCCGGAACGTCCCCAAGCTATGCAAA
CTGGCGCAACAATCGGTCCCAGTTCCGTCCATCTGGTCTACTGAAGGAGC
AGCCCGCCTTGGTTCAGGAGCAACAGTAACGACAAGTCACGACGATGGCA
GTATCGACCATGGTGTCACACAAGCACCCTACGAGCGCCGCTTCTCTCCA
TACGACTTCAACGGCGGATGACCACACATATGAATACAAGCAAGACAGTG
CTAGCCTCGGCAGGTTGTCTTACGGACGTGCGGACCCTCCAACAGGTGCT
TGACATGCGCCTCCGCATGTACGAGCACGACAACGGGAAGGAAATCAGCA
CGCCCGCCGTCGCGCAACTCTTGGGGAACACACTCTACTACAGGCGATTT
TTCCCTTACTATGCCTTCAACGTCTTGGCGGGGGTGGATGACGAGGGTAA
AGGCTGCGTCTTCTCCTATGACGCGGTGGGCTCGCATGAACGGGTTGAAT
ACTCGGCCAGCGGGTCGGGGCAGGCGTTCGTCATCCCCGTGATGGACAAC
ATCGTGGGCTTCAAGAACAGACAGGACCCGAAGCCCGAGTACACTGCCGC
GGACATCGTGGCGATTTGCAAGGACGCCTTTTTGACGGCGGGCGAGCGCG
ACATCTACACTGGAGATGCCGTTACCATAAGCGTCATTACCGCGGCCGGC
GTAACCACTGAGACGTTTGAGTTAAAACGCGACTAGTACGTGCCTCGCTA
TCGCAGGCAAGGACTTCGCTGTGGTCGCAGGAGATACGCGCCTTAGCACG
GGCTATGAGATTTTGTCCCGGAACGTCCCCAAGCTATGCAAACTGGCGCA
ACAATCGGTCCCAGTTCCGTCCATCTGGTCTACTGAAGGAGCAGCCCGCC
TTGGTTCAGGAGCAACAGTAACGACAAGTCACGACGATGGCAGTATCGAC
CATGGTGTCACACAAGCACCCTACGAGCGCCGCTTCTCTCCATACGACTT
CAACGGCGGATGACCACACATATGAATACAAGCAAGACAGTGCTAGCCTC
GGCAGGTTGTCTTACGGACGTGCGGACCCTCCAACAGGTGCTTGACATGC
GCCTCCGCATGTACGAGCACGACAACGGGAAGGAAATCAGCACGCCCGCC
GTCGCGCAACTCTTGGGGAACACACTCTACTACAGGCGATTTTTCCCTTA
CTATGCCTTCAACGTCTTGGCGGGGGTGGATGACGAGGGTAAAGGCTGCG
TCTTCTCCTATGACGCGGTGGGCTCGCATGAACGGGTTGAATACTCGGCC
AGCGGGTCGGGGCAGGCGTTCGTCATCCCCGTGATGGACAACATCGTGGG
CTTCAAGAACAGACAGGACCCGAAGCCCGAGTACACTGCCGCGGACATCG
TGGCGATTTGCAAGGACGCCTTTTTGACGGCGGGCGAGCGCGACATCTAC
ACTGGAGATGCCGTTACCATAAGCGTCATTACCGCGGCCGGCGTAACCAC
TGAGACGTTTGAGTTAAAACGCGACTAGTACGTGCCTCGCTATCGCAGGC
AAGGACTTCGCTGTGGTCGCAGGAGATACGCGCCTTAGCACGGGCTATGA
GATTTTGTCCCGGAACGTCCCCAAGCTATGCAAACTGGCGCAACAATCGG
TCCCAGTTCCGTCCATCTGGTCTACTGAAGGAGCAGCCCGCCTTGGTTCA
GGAGCAACAGTAACGACAAGTCACGACGATGGCAGTATCGACCATGGTGT
CACACAAGCACCCTACGAGCGCCGCTTCTCTCCATACGACTTCAACGGCG
GATGACCACACATATGAA
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Synonyms
Publications