EWM24969.1, cds5702 (CDS) Nannochloropsis gaditana

Overview
NameEWM24969.1
Unique Namecds5702
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:661145..661161 -
Alignment locationCM002466.1:660904..661068 -
Alignment locationCM002466.1:660671..660778 -
Alignment locationCM002466.1:660085..660586 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24969.1
ProductProteasome, beta-type subunit, conserved site
Orig transcript idgnl|cribi|Naga_100186g6.5608.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:661145..661161 -
CM002466.1supercontigCM002466.1:660904..661068 -
CM002466.1supercontigCM002466.1:660671..660778 -
CM002466.1supercontigCM002466.1:660085..660586 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0004175endopeptidase activity
GO:0004298threonine-type endopeptidase activity
Vocabulary: Biological Process
TermDefinition
GO:0009987cellular process
GO:0009056catabolic process
GO:0019538protein metabolic process
GO:0051603proteolysis involved in cellular protein catabolic process
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
GO:0005634nucleus
GO:0005839proteasome core complex
Vocabulary: INTERPRO
TermDefinition
IPR023333Proteasome_suB-type
IPR016050Proteasome_bsu_CS
IPR001353Proteasome_sua/b
IPR029055Ntn_hydrolases_N
Homology
BLAST of EWM24969.1 vs. NCBI_GenBank
Match: gi|585106601|gb|EWM24969.1| (Proteasome, beta-type subunit, conserved site [Nannochloropsis gaditana])

HSP 1 Score: 545.428 bits (1404), Expect = 0.000e+0
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0
Query:    1 MTTHMKAQQSVPVPSIWSTEGAARLGSGATVTTSHDDGSIDHGVTQAPYERRFSPYDFNGGTCLAIAGKDFAVVAGDTRLSTGYEILSRNVPKLCKLTSKTVLASAGCLTDVRTLQQVLDMRLRMYEHDNGKEISTPAVAQLLGNTLYYRRFFPYYAFNVLAGVDDEGKGCVFSYDAVGSHERVEYSASGSGQAFVIPVMDNIVGFKNRQDPKPEYTAADIVAICKDAFLTAGERDIYTGDAVTISVITAAGVTTETFELKRD 263
            MTTHMKAQQSVPVPSIWSTEGAARLGSGATVTTSHDDGSIDHGVTQAPYERRFSPYDFNGGTCLAIAGKDFAVVAGDTRLSTGYEILSRNVPKLCKLTSKTVLASAGCLTDVRTLQQVLDMRLRMYEHDNGKEISTPAVAQLLGNTLYYRRFFPYYAFNVLAGVDDEGKGCVFSYDAVGSHERVEYSASGSGQAFVIPVMDNIVGFKNRQDPKPEYTAADIVAICKDAFLTAGERDIYTGDAVTISVITAAGVTTETFELKRD
Sbjct:    1 MTTHMKAQQSVPVPSIWSTEGAARLGSGATVTTSHDDGSIDHGVTQAPYERRFSPYDFNGGTCLAIAGKDFAVVAGDTRLSTGYEILSRNVPKLCKLTSKTVLASAGCLTDVRTLQQVLDMRLRMYEHDNGKEISTPAVAQLLGNTLYYRRFFPYYAFNVLAGVDDEGKGCVFSYDAVGSHERVEYSASGSGQAFVIPVMDNIVGFKNRQDPKPEYTAADIVAICKDAFLTAGERDIYTGDAVTISVITAAGVTTETFELKRD 263          
BLAST of EWM24969.1 vs. NCBI_GenBank
Match: gi|223993685|ref|XP_002286526.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977841|gb|EED96167.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 330.872 bits (847), Expect = 2.407e-111
Identity = 153/228 (67.11%), Postives = 189/228 (82.89%), Query Frame = 0
Query:   36 DDGSIDHGVTQAPYERRFSPYDFNGGTCLAIAGKDFAVVAGDTRLSTGYEILSRNVPKLCKLTSKTVLASAGCLTDVRTLQQVLDMRLRMYEHDNGKEISTPAVAQLLGNTLYYRRFFPYYAFNVLAGVDDEGKGCVFSYDAVGSHERVEYSASGSGQAFVIPVMDNIVGFKNRQDPKPEYTAADIVAICKDAFLTAGERDIYTGDAVTISVITAAGVTTETFELKRD 263
            D  +IDHG+TQ+P+ERRFSPY+FNGGT LAI+G D+AVVA DTRLS+GYEILSRNV KL  LT K VL SAGC TDV  L+ VLD+++++Y H++ K ++TP+VAQ+LGNTLY +RFFPYY+FNVLAG+D EGKG V+SYDA+GS ER  +SASGSGQAF+IP+MDN++  KNR D K E  + ++V I KDAFLTAGERDIYTGDAV I VITA G+ +ETF+LK D
Sbjct:   53 DGSNIDHGITQSPWERRFSPYEFNGGTTLAISGPDYAVVAADTRLSSGYEILSRNVSKLHPLTEKCVLGSAGCKTDVDQLRSVLDIKMKVYAHNHRKAMATPSVAQMLGNTLYMKRFFPYYSFNVLAGIDSEGKGAVYSYDAIGSFERTPFSASGSGQAFLIPLMDNVISHKNRLDQKRELGSEEVVEIVKDAFLTAGERDIYTGDAVEIMVITAKGIESETFKLKAD 280          
BLAST of EWM24969.1 vs. NCBI_GenBank
Match: gi|397610458|gb|EJK60845.1| (hypothetical protein THAOC_18741 [Thalassiosira oceanica])

HSP 1 Score: 329.331 bits (843), Expect = 1.232e-110
Identity = 166/272 (61.03%), Postives = 204/272 (75.00%), Query Frame = 0
Query:    6 KAQQSVPVPSIWSTEGAARL-----GSGATVTTSHD--------DGS-IDHGVTQAPYERRFSPYDFNGGTCLAIAGKDFAVVAGDTRLSTGYEILSRNVPKLCKLTSKTVLASAGCLTDVRTLQQVLDMRLRMYEHDNGKEISTPAVAQLLGNTLYYRRFFPYYAFNVLAGVDDEGKGCVFSYDAVGSHERVEYSASGSGQAFVIPVMDNIVGFKNRQDPKPEYTAADIVAICKDAFLTAGERDIYTGDAVTISVITAAGVTTETFELKRD 263
              Q  VP   I S+EG A +     GS  +V  S          DGS IDHGVTQAPYERRFSPY+FNGGT LAI+G D+AVVA DTRLS+GYEILSRNV KL  LT + VL SAGC TDV  L+ VLD+++++Y H++ K ++TP+VAQ+LGNTLYY+RFFPYY+FNVLAG+D EGKG V+SYDA+GS ER  +SASGSGQ+F+IP+MDN++  KNR D + +  A ++V I KDAFLTAGERDIYTGDAV I VIT  G+  +TF+LK D
Sbjct:   15 NGQNCVP---IHSSEGGASISVHFDGSNLSVAQSPHADPGSSAIDGSGIDHGVTQAPYERRFSPYEFNGGTTLAISGPDYAVVAADTRLSSGYEILSRNVSKLHPLTGRCVLGSAGCKTDVDQLRSVLDIKMKVYAHNHRKPMATPSVAQMLGNTLYYKRFFPYYSFNVLAGIDSEGKGAVYSYDAIGSFERTPFSASGSGQSFLIPLMDNVISHKNRLDERRDLPAEEVVEIVKDAFLTAGERDIYTGDAVDIMVITKDGIDKQTFQLKAD 283          
BLAST of EWM24969.1 vs. NCBI_GenBank
Match: gi|298711428|emb|CBJ32569.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 319.701 bits (818), Expect = 2.679e-107
Identity = 153/248 (61.69%), Postives = 193/248 (77.82%), Query Frame = 0
Query:   16 IWSTEGAARLGSGATVTTSHDDGSIDHGVTQAPYERRFSPYDFNGGTCLAIAGKDFAVVAGDTRLSTGYEILSRNVPKLCKLTSKTVLASAGCLTDVRTLQQVLDMRLRMYEHDNGKEISTPAVAQLLGNTLYYRRFFPYYAFNVLAGVDDEGKGCVFSYDAVGSHERVEYSASGSGQAFVIPVMDNIVGFKNRQDPKPEYTAADIVAICKDAFLTAGERDIYTGDAVTISVITAAGVTTETFELKRD 263
            IW +EG   L     V +S     IDHGVTQ P+ERR+SPYDFNGGT LAIAG D+ VVA DTR+STGY I+SR+  KL +LTSK V+ASAGC TDV TL + LD+ + MY+H+  KE++TPAVAQ+L NTLYYRRFFPYY+FNVL G+D++GKG VFSYDA+GS ERV YSASGSGQ ++IP++DN+V FK R+D KP  +AA+ V + K+  +TAGERDIYTGDAV I++I+  G +T+ F LK+D
Sbjct:   12 IWHSEGTKDL----QVLSS----GIDHGVTQNPFERRWSPYDFNGGTTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRKDEKPARSAAETVELVKELLVTAGERDIYTGDAVEITIISKDGTSTQMFPLKKD 251          
BLAST of EWM24969.1 vs. NCBI_GenBank
Match: gi|1072227564|gb|OEU12303.1| (putative proteasome subunit beta type 1 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 319.701 bits (818), Expect = 4.857e-107
Identity = 146/226 (64.60%), Postives = 182/226 (80.53%), Query Frame = 0
Query:   38 GSIDHGVTQAPYERRFSPYDFNGGTCLAIAGKDFAVVAGDTRLSTGYEILSRNVPKLCKLTSKTVLASAGCLTDVRTLQQVLDMRLRMYEHDNGKEISTPAVAQLLGNTLYYRRFFPYYAFNVLAGVDDEGKGCVFSYDAVGSHERVEYSASGSGQAFVIPVMDNIVGFKNRQDPKPEYTAADIVAICKDAFLTAGERDIYTGDAVTISVITAAGVTTETFELKRD 263
            G IDHGVT+ PYERRFSPYDFNGGTC+AIAG D+AV+A DTRLS+GYEILSRN+ KL  L+ K +L SAGC TDV  L+ VLD++++MY H++ K +STPAVAQ+LGNTLYY+RFFPYYAFNV  G+D+EGKG V+SYDA+GS ER   +A+GSGQA++IP++DN++  +NR D K +    ++V I KDAFL+ GERDIYTGD V ISVIT  G+ T  F LKRD
Sbjct:   44 GKIDHGVTENPYERRFSPYDFNGGTCVAIAGPDYAVIAADTRLSSGYEILSRNMSKLHPLSGKCILGSAGCKTDVDQLRSVLDIKMKMYLHNHRKTMSTPAVAQMLGNTLYYKRFFPYYAFNVFGGIDEEGKGAVYSYDAIGSFERTPVTATGSGQAYIIPLLDNVIAHRNRLDEKRDLPKEEVVEIVKDAFLSCGERDIYTGDQVEISVITKDGIETSFFALKRD 269          
BLAST of EWM24969.1 vs. NCBI_GenBank
Match: gi|1210513804|dbj|GAX27103.1| (20S proteasome subunit beta 6 [Fistulifera solaris])

HSP 1 Score: 288.886 bits (738), Expect = 2.219e-95
Identity = 139/234 (59.40%), Postives = 179/234 (76.50%), Query Frame = 0
Query:   30 TVTTSHDDGSIDHGVTQAPYERRFSPYDFNGGTCLAIAGKDFAVVAGDTRLSTGYEILSRNVPKLCKLTSKTVLASAGCLTDVRTLQQVLDMRLRMYEHDNGKEISTPAVAQLLGNTLYYRRFFPYYAFNVLAGVDDEGKGCVFSYDAVGSHERVEYSASGSGQAFVIPVMDNIVGFKNRQDPKPEYTAADIVAICKDAFLTAGERDIYTGDAVTISVITAAGVTTETFELKRD 263
            T+  S ++ S+    T  P E RFSPYDFNGGT  A++G D+ VVA DTRLS+GYEI SRNV KL  LT K +LASAGC TDV  L+ VLD+R +MY++++ K ++TP+VAQ+L  TLY +RFFPYYAFNVLAG+D +G G V+SYDA+GS ER +YSA+GSGQA+VIP +DN++G +NR + KP  TA ++V + KDAFL+AGERDIYTGD V I V+T  G+ T+TF LK D
Sbjct:    3 TLMASTEESSV-VATTSLPIEHRFSPYDFNGGTVAAVSGPDYVVVAADTRLSSGYEIKSRNVTKLHALTDKCILASAGCKTDVDQLRSVLDIRGKMYQYNHRKPMNTPSVAQMLSVTLYGKRFFPYYAFNVLAGIDAQGVGAVYSYDAIGSFERTQYSAAGSGQAYVIPFLDNVIGNRNRLEEKPILTATEVVELLKDAFLSAGERDIYTGDQVEIMVVTRDGIQTQTFALKAD 235          
BLAST of EWM24969.1 vs. NCBI_GenBank
Match: gi|1210513164|dbj|GAX27561.1| (20S proteasome subunit beta 6 [Fistulifera solaris])

HSP 1 Score: 284.648 bits (727), Expect = 9.819e-94
Identity = 135/219 (61.64%), Postives = 169/219 (77.17%), Query Frame = 0
Query:   45 TQAPYERRFSPYDFNGGTCLAIAGKDFAVVAGDTRLSTGYEILSRNVPKLCKLTSKTVLASAGCLTDVRTLQQVLDMRLRMYEHDNGKEISTPAVAQLLGNTLYYRRFFPYYAFNVLAGVDDEGKGCVFSYDAVGSHERVEYSASGSGQAFVIPVMDNIVGFKNRQDPKPEYTAADIVAICKDAFLTAGERDIYTGDAVTISVITAAGVTTETFELKRD 263
            T  P E RFSPYDFNGGT  A+AG D+ VVA DTRLS+GYEI SR+V KL  LT++ +LASAGC TDV  L+ VLD+R +MY+H++ K + TP+VAQ+L  TLY +RFFPYYAFNVLAG+D  G G V+SYDA+GS ER  YSA+GSGQA+VIP +DN++G +NR + KP   A ++V + KDAFL+AGERDIYTGD V I V+T  G+ T+TF LK D
Sbjct:   15 TSKPIEHRFSPYDFNGGTVAAVAGPDYVVVAADTRLSSGYEIKSRHVTKLHALTNQCILASAGCKTDVDQLRSVLDIRGKMYQHNHRKPMQTPSVAQMLSVTLYGKRFFPYYAFNVLAGMDAAGVGAVYSYDAIGSFERTGYSAAGSGQAYVIPFLDNVIGNRNRLEEKPVLAAQEVVELLKDAFLSAGERDIYTGDQVEIMVVTKDGIQTQTFALKAD 233          
BLAST of EWM24969.1 vs. NCBI_GenBank
Match: gi|551671161|ref|XP_005838338.1| (20S proteasome subunit beta type 1 [Guillardia theta CCMP2712] >gi|428182497|gb|EKX51358.1| 20S proteasome subunit beta type 1 [Guillardia theta CCMP2712])

HSP 1 Score: 264.618 bits (675), Expect = 6.877e-86
Identity = 121/219 (55.25%), Postives = 160/219 (73.06%), Query Frame = 0
Query:   46 QAPYERRFSPYDFNGGTCLAIAGKDFAVVAGDTRLSTGYEILSRNVPKLCKLTSKTVLASAGCLTDVRTLQQVLDMRLRMYEHDNGKEISTPAVAQLLGNTLYYRRFFPYYAFNVLAGVDDEGKGCVFSYDAVGSHERVEYSASGSGQAFVIPVMDNIVGFKNRQD-PKPEYTAADIVAICKDAFLTAGERDIYTGDAVTISVITAAGVTTETFELKRD 263
            + P E RFSPY  NGGTCLA+AG DF ++A D+RLS GY ILSRN PK+ +LT+KT +AS+GC  D+ TLQ+ L  +++MY H +GKE+STPAVAQ+L  TLY+RRFFPYY FN++ G+D  G+GCVFSYDA+G  ER++Y+ SGSG A + P +DN+V +KN  + P  E +  + + + KD F +AGERDIYTGD V I +I   G   E F LK+D
Sbjct:   12 EQPKESRFSPYQNNGGTCLALAGADFCIIAADSRLSLGYSILSRNTPKVAQLTTKTCIASSGCNADMVTLQKYLKFKIQMYLHQHGKEMSTPAVAQMLATTLYHRRFFPYYTFNIVGGLDQNGEGCVFSYDAIGCFERLKYTVSGSGHALIEPFLDNLVAYKNTDNKPTIERSCDETLELVKDIFSSAGERDIYTGDFVDIYIIDKNGTRYEQFPLKKD 230          
BLAST of EWM24969.1 vs. NCBI_GenBank
Match: gi|325184015|emb|CCA18472.1| (proteasome subunit beta putative [Albugo laibachii Nc14])

HSP 1 Score: 261.922 bits (668), Expect = 1.490e-84
Identity = 135/253 (53.36%), Postives = 173/253 (68.38%), Query Frame = 0
Query:   11 VPVPSIWSTEGAARLGSGATVTTSHDDGSIDHGVTQAPYERRFSPYDFNGGTCLAIAGKDFAVVAGDTRLSTGYEILSRNVPKLCKLTSKTVLASAGCLTDVRTLQQVLDMRLRMYEHDNGKEISTPAVAQLLGNTLYYRRFFPYYAFNVLAGVDDEGKGCVFSYDAVGSHERVEYSASGSGQAFVIPVMDNIVGFKNRQDPKPEYTAADIVAICKDAFLTAGERDIYTGDAVTISVITAAGVTTETFELKRD 263
            +P+ S  +TEG   L      T     G+ +H      +   + PYDFNGGT LAIAG D+ V+AGD+RLSTGY ILSRN  KL +LTS +VLAS G   DV  L+ +L ++++MY HDN   IST  ++Q+L NTLY RRFFPYYAF VLAG+D +GKG V+SYDA+GS++RV   A GSG   +IP++DN+V   +R DPK E+T  +   I KDAF+TAGERDIYTGD V I  ITA+G+  E FELK+D
Sbjct:    1 MPLISAHTTEGDTPLHLNPCDTKKAVSGTHNH------HRAAWEPYDFNGGTALAIAGPDYVVIAGDSRLSTGYSILSRNEKKLQQLTSTSVLASPGSHNDVIQLRGMLQLQIQMYMHDNQAIISTENLSQVLMNTLYSRRFFPYYAFCVLAGIDKDGKGAVYSYDAIGSYDRVSRGAVGSGGHLMIPLLDNLVEHYSRTDPKREFTQQETKEIIKDAFITAGERDIYTGDCVEIMTITASGIEKEHFELKKD 247          
BLAST of EWM24969.1 vs. NCBI_GenBank
Match: gi|1176108367|ref|XP_020625121.1| (proteasome subunit beta type-1-like [Orbicella faveolata])

HSP 1 Score: 255.758 bits (652), Expect = 1.853e-82
Identity = 124/220 (56.36%), Postives = 159/220 (72.27%), Query Frame = 0
Query:   45 TQAPYERRFSPYDFNGGTCLAIAGKDFAVVAGDTRLSTGYEILSRNVPKLCKLTSKTVLASAGCLTDVRTLQQVLDMRLRMYEHDNGKEISTPAVAQLLGNTLYYRRFFPYYAFNVLAGVDDEGKGCVFSYDAVGSHERVEYSASGSGQAFVIPVMDNIVGFKNRQDP-KPEYTAADIVAICKDAFLTAGERDIYTGDAVTISVITAAGVTTETFELKRD 263
            T+ P ++ FSPY FNGGT LAIAG+DF+V+A DTRLS G+ I +R+ PK  KLT+ TVL  AG   D  TL +++  RL+MYEH++G ++S PA+AQ+L   LYYRRFFPYY +N+LAG+D+EGKGCVFS+D VGS+ER  Y A GS  A + P++DN +GFKN+Q   +   T    V + KD F  A ERDIYTGDAV ISV+T  GVT E F L+RD
Sbjct:    3 TERPVQQYFSPYTFNGGTVLAIAGEDFSVIASDTRLSQGFAIHTRDSPKTYKLTNSTVLGCAGFHGDCLTLTKLITARLQMYEHEHGSKMSCPAIAQMLSTVLYYRRFFPYYTYNILAGLDNEGKGCVFSFDPVGSYERETYRAGGSASALLQPLLDNQIGFKNQQGATEVPLTKDKAVFLVKDVFTAAAERDIYTGDAVIISVVTKDGVTEEAFPLRRD 222          
The following BLAST results are available for this feature:
BLAST of EWM24969.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106601|gb|EWM24969.1|0.000e+0100.00Proteasome, beta-type subunit, conserved site [Nan... [more]
gi|223993685|ref|XP_002286526.1|2.407e-11167.11predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|397610458|gb|EJK60845.1|1.232e-11061.03hypothetical protein THAOC_18741 [Thalassiosira oc... [more]
gi|298711428|emb|CBJ32569.1|2.679e-10761.69conserved unknown protein [Ectocarpus siliculosus][more]
gi|1072227564|gb|OEU12303.1|4.857e-10764.60putative proteasome subunit beta type 1 [Fragilari... [more]
gi|1210513804|dbj|GAX27103.1|2.219e-9559.4020S proteasome subunit beta 6 [Fistulifera solaris... [more]
gi|1210513164|dbj|GAX27561.1|9.819e-9461.6420S proteasome subunit beta 6 [Fistulifera solaris... [more]
gi|551671161|ref|XP_005838338.1|6.877e-8655.2520S proteasome subunit beta type 1 [Guillardia the... [more]
gi|325184015|emb|CCA18472.1|1.490e-8453.36proteasome subunit beta putative [Albugo laibachii... [more]
gi|1176108367|ref|XP_020625121.1|1.853e-8256.36proteasome subunit beta type-1-like [Orbicella fav... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5717rna5717Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications