EWM24969.1, cds5702 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24969.1 vs. NCBI_GenBank
Match: gi|585106601|gb|EWM24969.1| (Proteasome, beta-type subunit, conserved site [Nannochloropsis gaditana]) HSP 1 Score: 545.428 bits (1404), Expect = 0.000e+0 Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0
Query: 1 MTTHMKAQQSVPVPSIWSTEGAARLGSGATVTTSHDDGSIDHGVTQAPYERRFSPYDFNGGTCLAIAGKDFAVVAGDTRLSTGYEILSRNVPKLCKLTSKTVLASAGCLTDVRTLQQVLDMRLRMYEHDNGKEISTPAVAQLLGNTLYYRRFFPYYAFNVLAGVDDEGKGCVFSYDAVGSHERVEYSASGSGQAFVIPVMDNIVGFKNRQDPKPEYTAADIVAICKDAFLTAGERDIYTGDAVTISVITAAGVTTETFELKRD 263
MTTHMKAQQSVPVPSIWSTEGAARLGSGATVTTSHDDGSIDHGVTQAPYERRFSPYDFNGGTCLAIAGKDFAVVAGDTRLSTGYEILSRNVPKLCKLTSKTVLASAGCLTDVRTLQQVLDMRLRMYEHDNGKEISTPAVAQLLGNTLYYRRFFPYYAFNVLAGVDDEGKGCVFSYDAVGSHERVEYSASGSGQAFVIPVMDNIVGFKNRQDPKPEYTAADIVAICKDAFLTAGERDIYTGDAVTISVITAAGVTTETFELKRD
Sbjct: 1 MTTHMKAQQSVPVPSIWSTEGAARLGSGATVTTSHDDGSIDHGVTQAPYERRFSPYDFNGGTCLAIAGKDFAVVAGDTRLSTGYEILSRNVPKLCKLTSKTVLASAGCLTDVRTLQQVLDMRLRMYEHDNGKEISTPAVAQLLGNTLYYRRFFPYYAFNVLAGVDDEGKGCVFSYDAVGSHERVEYSASGSGQAFVIPVMDNIVGFKNRQDPKPEYTAADIVAICKDAFLTAGERDIYTGDAVTISVITAAGVTTETFELKRD 263
BLAST of EWM24969.1 vs. NCBI_GenBank
Match: gi|223993685|ref|XP_002286526.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220977841|gb|EED96167.1| predicted protein [Thalassiosira pseudonana CCMP1335]) HSP 1 Score: 330.872 bits (847), Expect = 2.407e-111 Identity = 153/228 (67.11%), Postives = 189/228 (82.89%), Query Frame = 0
Query: 36 DDGSIDHGVTQAPYERRFSPYDFNGGTCLAIAGKDFAVVAGDTRLSTGYEILSRNVPKLCKLTSKTVLASAGCLTDVRTLQQVLDMRLRMYEHDNGKEISTPAVAQLLGNTLYYRRFFPYYAFNVLAGVDDEGKGCVFSYDAVGSHERVEYSASGSGQAFVIPVMDNIVGFKNRQDPKPEYTAADIVAICKDAFLTAGERDIYTGDAVTISVITAAGVTTETFELKRD 263
D +IDHG+TQ+P+ERRFSPY+FNGGT LAI+G D+AVVA DTRLS+GYEILSRNV KL LT K VL SAGC TDV L+ VLD+++++Y H++ K ++TP+VAQ+LGNTLY +RFFPYY+FNVLAG+D EGKG V+SYDA+GS ER +SASGSGQAF+IP+MDN++ KNR D K E + ++V I KDAFLTAGERDIYTGDAV I VITA G+ +ETF+LK D
Sbjct: 53 DGSNIDHGITQSPWERRFSPYEFNGGTTLAISGPDYAVVAADTRLSSGYEILSRNVSKLHPLTEKCVLGSAGCKTDVDQLRSVLDIKMKVYAHNHRKAMATPSVAQMLGNTLYMKRFFPYYSFNVLAGIDSEGKGAVYSYDAIGSFERTPFSASGSGQAFLIPLMDNVISHKNRLDQKRELGSEEVVEIVKDAFLTAGERDIYTGDAVEIMVITAKGIESETFKLKAD 280
BLAST of EWM24969.1 vs. NCBI_GenBank
Match: gi|397610458|gb|EJK60845.1| (hypothetical protein THAOC_18741 [Thalassiosira oceanica]) HSP 1 Score: 329.331 bits (843), Expect = 1.232e-110 Identity = 166/272 (61.03%), Postives = 204/272 (75.00%), Query Frame = 0
Query: 6 KAQQSVPVPSIWSTEGAARL-----GSGATVTTSHD--------DGS-IDHGVTQAPYERRFSPYDFNGGTCLAIAGKDFAVVAGDTRLSTGYEILSRNVPKLCKLTSKTVLASAGCLTDVRTLQQVLDMRLRMYEHDNGKEISTPAVAQLLGNTLYYRRFFPYYAFNVLAGVDDEGKGCVFSYDAVGSHERVEYSASGSGQAFVIPVMDNIVGFKNRQDPKPEYTAADIVAICKDAFLTAGERDIYTGDAVTISVITAAGVTTETFELKRD 263
Q VP I S+EG A + GS +V S DGS IDHGVTQAPYERRFSPY+FNGGT LAI+G D+AVVA DTRLS+GYEILSRNV KL LT + VL SAGC TDV L+ VLD+++++Y H++ K ++TP+VAQ+LGNTLYY+RFFPYY+FNVLAG+D EGKG V+SYDA+GS ER +SASGSGQ+F+IP+MDN++ KNR D + + A ++V I KDAFLTAGERDIYTGDAV I VIT G+ +TF+LK D
Sbjct: 15 NGQNCVP---IHSSEGGASISVHFDGSNLSVAQSPHADPGSSAIDGSGIDHGVTQAPYERRFSPYEFNGGTTLAISGPDYAVVAADTRLSSGYEILSRNVSKLHPLTGRCVLGSAGCKTDVDQLRSVLDIKMKVYAHNHRKPMATPSVAQMLGNTLYYKRFFPYYSFNVLAGIDSEGKGAVYSYDAIGSFERTPFSASGSGQSFLIPLMDNVISHKNRLDERRDLPAEEVVEIVKDAFLTAGERDIYTGDAVDIMVITKDGIDKQTFQLKAD 283
BLAST of EWM24969.1 vs. NCBI_GenBank
Match: gi|298711428|emb|CBJ32569.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 319.701 bits (818), Expect = 2.679e-107 Identity = 153/248 (61.69%), Postives = 193/248 (77.82%), Query Frame = 0
Query: 16 IWSTEGAARLGSGATVTTSHDDGSIDHGVTQAPYERRFSPYDFNGGTCLAIAGKDFAVVAGDTRLSTGYEILSRNVPKLCKLTSKTVLASAGCLTDVRTLQQVLDMRLRMYEHDNGKEISTPAVAQLLGNTLYYRRFFPYYAFNVLAGVDDEGKGCVFSYDAVGSHERVEYSASGSGQAFVIPVMDNIVGFKNRQDPKPEYTAADIVAICKDAFLTAGERDIYTGDAVTISVITAAGVTTETFELKRD 263
IW +EG L V +S IDHGVTQ P+ERR+SPYDFNGGT LAIAG D+ VVA DTR+STGY I+SR+ KL +LTSK V+ASAGC TDV TL + LD+ + MY+H+ KE++TPAVAQ+L NTLYYRRFFPYY+FNVL G+D++GKG VFSYDA+GS ERV YSASGSGQ ++IP++DN+V FK R+D KP +AA+ V + K+ +TAGERDIYTGDAV I++I+ G +T+ F LK+D
Sbjct: 12 IWHSEGTKDL----QVLSS----GIDHGVTQNPFERRWSPYDFNGGTTLAIAGADYVVVAADTRMSTGYSIMSRDQTKLHQLTSKCVIASAGCKTDVTTLWKELDVSMTMYDHNMEKEMATPAVAQMLANTLYYRRFFPYYSFNVLCGLDEQGKGSVFSYDAIGSFERVPYSASGSGQTYIIPLLDNLVEFKTRKDEKPARSAAETVELVKELLVTAGERDIYTGDAVEITIISKDGTSTQMFPLKKD 251
BLAST of EWM24969.1 vs. NCBI_GenBank
Match: gi|1072227564|gb|OEU12303.1| (putative proteasome subunit beta type 1 [Fragilariopsis cylindrus CCMP1102]) HSP 1 Score: 319.701 bits (818), Expect = 4.857e-107 Identity = 146/226 (64.60%), Postives = 182/226 (80.53%), Query Frame = 0
Query: 38 GSIDHGVTQAPYERRFSPYDFNGGTCLAIAGKDFAVVAGDTRLSTGYEILSRNVPKLCKLTSKTVLASAGCLTDVRTLQQVLDMRLRMYEHDNGKEISTPAVAQLLGNTLYYRRFFPYYAFNVLAGVDDEGKGCVFSYDAVGSHERVEYSASGSGQAFVIPVMDNIVGFKNRQDPKPEYTAADIVAICKDAFLTAGERDIYTGDAVTISVITAAGVTTETFELKRD 263
G IDHGVT+ PYERRFSPYDFNGGTC+AIAG D+AV+A DTRLS+GYEILSRN+ KL L+ K +L SAGC TDV L+ VLD++++MY H++ K +STPAVAQ+LGNTLYY+RFFPYYAFNV G+D+EGKG V+SYDA+GS ER +A+GSGQA++IP++DN++ +NR D K + ++V I KDAFL+ GERDIYTGD V ISVIT G+ T F LKRD
Sbjct: 44 GKIDHGVTENPYERRFSPYDFNGGTCVAIAGPDYAVIAADTRLSSGYEILSRNMSKLHPLSGKCILGSAGCKTDVDQLRSVLDIKMKMYLHNHRKTMSTPAVAQMLGNTLYYKRFFPYYAFNVFGGIDEEGKGAVYSYDAIGSFERTPVTATGSGQAYIIPLLDNVIAHRNRLDEKRDLPKEEVVEIVKDAFLSCGERDIYTGDQVEISVITKDGIETSFFALKRD 269
BLAST of EWM24969.1 vs. NCBI_GenBank
Match: gi|1210513804|dbj|GAX27103.1| (20S proteasome subunit beta 6 [Fistulifera solaris]) HSP 1 Score: 288.886 bits (738), Expect = 2.219e-95 Identity = 139/234 (59.40%), Postives = 179/234 (76.50%), Query Frame = 0
Query: 30 TVTTSHDDGSIDHGVTQAPYERRFSPYDFNGGTCLAIAGKDFAVVAGDTRLSTGYEILSRNVPKLCKLTSKTVLASAGCLTDVRTLQQVLDMRLRMYEHDNGKEISTPAVAQLLGNTLYYRRFFPYYAFNVLAGVDDEGKGCVFSYDAVGSHERVEYSASGSGQAFVIPVMDNIVGFKNRQDPKPEYTAADIVAICKDAFLTAGERDIYTGDAVTISVITAAGVTTETFELKRD 263
T+ S ++ S+ T P E RFSPYDFNGGT A++G D+ VVA DTRLS+GYEI SRNV KL LT K +LASAGC TDV L+ VLD+R +MY++++ K ++TP+VAQ+L TLY +RFFPYYAFNVLAG+D +G G V+SYDA+GS ER +YSA+GSGQA+VIP +DN++G +NR + KP TA ++V + KDAFL+AGERDIYTGD V I V+T G+ T+TF LK D
Sbjct: 3 TLMASTEESSV-VATTSLPIEHRFSPYDFNGGTVAAVSGPDYVVVAADTRLSSGYEIKSRNVTKLHALTDKCILASAGCKTDVDQLRSVLDIRGKMYQYNHRKPMNTPSVAQMLSVTLYGKRFFPYYAFNVLAGIDAQGVGAVYSYDAIGSFERTQYSAAGSGQAYVIPFLDNVIGNRNRLEEKPILTATEVVELLKDAFLSAGERDIYTGDQVEIMVVTRDGIQTQTFALKAD 235
BLAST of EWM24969.1 vs. NCBI_GenBank
Match: gi|1210513164|dbj|GAX27561.1| (20S proteasome subunit beta 6 [Fistulifera solaris]) HSP 1 Score: 284.648 bits (727), Expect = 9.819e-94 Identity = 135/219 (61.64%), Postives = 169/219 (77.17%), Query Frame = 0
Query: 45 TQAPYERRFSPYDFNGGTCLAIAGKDFAVVAGDTRLSTGYEILSRNVPKLCKLTSKTVLASAGCLTDVRTLQQVLDMRLRMYEHDNGKEISTPAVAQLLGNTLYYRRFFPYYAFNVLAGVDDEGKGCVFSYDAVGSHERVEYSASGSGQAFVIPVMDNIVGFKNRQDPKPEYTAADIVAICKDAFLTAGERDIYTGDAVTISVITAAGVTTETFELKRD 263
T P E RFSPYDFNGGT A+AG D+ VVA DTRLS+GYEI SR+V KL LT++ +LASAGC TDV L+ VLD+R +MY+H++ K + TP+VAQ+L TLY +RFFPYYAFNVLAG+D G G V+SYDA+GS ER YSA+GSGQA+VIP +DN++G +NR + KP A ++V + KDAFL+AGERDIYTGD V I V+T G+ T+TF LK D
Sbjct: 15 TSKPIEHRFSPYDFNGGTVAAVAGPDYVVVAADTRLSSGYEIKSRHVTKLHALTNQCILASAGCKTDVDQLRSVLDIRGKMYQHNHRKPMQTPSVAQMLSVTLYGKRFFPYYAFNVLAGMDAAGVGAVYSYDAIGSFERTGYSAAGSGQAYVIPFLDNVIGNRNRLEEKPVLAAQEVVELLKDAFLSAGERDIYTGDQVEIMVVTKDGIQTQTFALKAD 233
BLAST of EWM24969.1 vs. NCBI_GenBank
Match: gi|551671161|ref|XP_005838338.1| (20S proteasome subunit beta type 1 [Guillardia theta CCMP2712] >gi|428182497|gb|EKX51358.1| 20S proteasome subunit beta type 1 [Guillardia theta CCMP2712]) HSP 1 Score: 264.618 bits (675), Expect = 6.877e-86 Identity = 121/219 (55.25%), Postives = 160/219 (73.06%), Query Frame = 0
Query: 46 QAPYERRFSPYDFNGGTCLAIAGKDFAVVAGDTRLSTGYEILSRNVPKLCKLTSKTVLASAGCLTDVRTLQQVLDMRLRMYEHDNGKEISTPAVAQLLGNTLYYRRFFPYYAFNVLAGVDDEGKGCVFSYDAVGSHERVEYSASGSGQAFVIPVMDNIVGFKNRQD-PKPEYTAADIVAICKDAFLTAGERDIYTGDAVTISVITAAGVTTETFELKRD 263
+ P E RFSPY NGGTCLA+AG DF ++A D+RLS GY ILSRN PK+ +LT+KT +AS+GC D+ TLQ+ L +++MY H +GKE+STPAVAQ+L TLY+RRFFPYY FN++ G+D G+GCVFSYDA+G ER++Y+ SGSG A + P +DN+V +KN + P E + + + + KD F +AGERDIYTGD V I +I G E F LK+D
Sbjct: 12 EQPKESRFSPYQNNGGTCLALAGADFCIIAADSRLSLGYSILSRNTPKVAQLTTKTCIASSGCNADMVTLQKYLKFKIQMYLHQHGKEMSTPAVAQMLATTLYHRRFFPYYTFNIVGGLDQNGEGCVFSYDAIGCFERLKYTVSGSGHALIEPFLDNLVAYKNTDNKPTIERSCDETLELVKDIFSSAGERDIYTGDFVDIYIIDKNGTRYEQFPLKKD 230
BLAST of EWM24969.1 vs. NCBI_GenBank
Match: gi|325184015|emb|CCA18472.1| (proteasome subunit beta putative [Albugo laibachii Nc14]) HSP 1 Score: 261.922 bits (668), Expect = 1.490e-84 Identity = 135/253 (53.36%), Postives = 173/253 (68.38%), Query Frame = 0
Query: 11 VPVPSIWSTEGAARLGSGATVTTSHDDGSIDHGVTQAPYERRFSPYDFNGGTCLAIAGKDFAVVAGDTRLSTGYEILSRNVPKLCKLTSKTVLASAGCLTDVRTLQQVLDMRLRMYEHDNGKEISTPAVAQLLGNTLYYRRFFPYYAFNVLAGVDDEGKGCVFSYDAVGSHERVEYSASGSGQAFVIPVMDNIVGFKNRQDPKPEYTAADIVAICKDAFLTAGERDIYTGDAVTISVITAAGVTTETFELKRD 263
+P+ S +TEG L T G+ +H + + PYDFNGGT LAIAG D+ V+AGD+RLSTGY ILSRN KL +LTS +VLAS G DV L+ +L ++++MY HDN IST ++Q+L NTLY RRFFPYYAF VLAG+D +GKG V+SYDA+GS++RV A GSG +IP++DN+V +R DPK E+T + I KDAF+TAGERDIYTGD V I ITA+G+ E FELK+D
Sbjct: 1 MPLISAHTTEGDTPLHLNPCDTKKAVSGTHNH------HRAAWEPYDFNGGTALAIAGPDYVVIAGDSRLSTGYSILSRNEKKLQQLTSTSVLASPGSHNDVIQLRGMLQLQIQMYMHDNQAIISTENLSQVLMNTLYSRRFFPYYAFCVLAGIDKDGKGAVYSYDAIGSYDRVSRGAVGSGGHLMIPLLDNLVEHYSRTDPKREFTQQETKEIIKDAFITAGERDIYTGDCVEIMTITASGIEKEHFELKKD 247
BLAST of EWM24969.1 vs. NCBI_GenBank
Match: gi|1176108367|ref|XP_020625121.1| (proteasome subunit beta type-1-like [Orbicella faveolata]) HSP 1 Score: 255.758 bits (652), Expect = 1.853e-82 Identity = 124/220 (56.36%), Postives = 159/220 (72.27%), Query Frame = 0
Query: 45 TQAPYERRFSPYDFNGGTCLAIAGKDFAVVAGDTRLSTGYEILSRNVPKLCKLTSKTVLASAGCLTDVRTLQQVLDMRLRMYEHDNGKEISTPAVAQLLGNTLYYRRFFPYYAFNVLAGVDDEGKGCVFSYDAVGSHERVEYSASGSGQAFVIPVMDNIVGFKNRQDP-KPEYTAADIVAICKDAFLTAGERDIYTGDAVTISVITAAGVTTETFELKRD 263
T+ P ++ FSPY FNGGT LAIAG+DF+V+A DTRLS G+ I +R+ PK KLT+ TVL AG D TL +++ RL+MYEH++G ++S PA+AQ+L LYYRRFFPYY +N+LAG+D+EGKGCVFS+D VGS+ER Y A GS A + P++DN +GFKN+Q + T V + KD F A ERDIYTGDAV ISV+T GVT E F L+RD
Sbjct: 3 TERPVQQYFSPYTFNGGTVLAIAGEDFSVIASDTRLSQGFAIHTRDSPKTYKLTNSTVLGCAGFHGDCLTLTKLITARLQMYEHEHGSKMSCPAIAQMLSTVLYYRRFFPYYTYNILAGLDNEGKGCVFSFDPVGSYERETYRAGGSASALLQPLLDNQIGFKNQQGATEVPLTKDKAVFLVKDVFTAAAERDIYTGDAVIISVVTKDGVTEEAFPLRRD 222 The following BLAST results are available for this feature:
BLAST of EWM24969.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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