rna5715, rna5715 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5715
Unique Name	rna5715
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2219
Alignment location	CM002466.1:656191..658980 -

Link to JBrowse

Properties


Property Name	Value
Product	Exocyst complex component Sec6
Orig transcript id	gnl\|cribi\|Naga_100186g8.5611.mrna
Orig protein id	gnl\|cribi\|Naga_100186g8.5611
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:656191..658980 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100186g8	gene5520	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24972.1	cds5700	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5715	rna5715-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:656191..658980-
coding sequence from alignment at CM002466.1:656191..658980-

mRNA sequence

>rna5715 ID=rna5715|Name=rna5715|organism=Nannochloropsis gaditana|type=mRNA|length=2219bp
ATGCCAGGTCTAAGTCTTCCTCTTAAGCTGAAACGTCGTCTTAATATTCA
TTCACTCTATTTGAACATGCATCACATAATACTTCATGGCTCTTATTCCT
ACACAGGCCGGGCAGTCGCCAAATTGCTTACGCTTCACTTCCGTCTGGCA
AGTTGTGCCATGGACCCTGCTATCTCCGCCGCGTCTAGTGCTAACGTCAG
TTGGAATGACACTGCGATCATTACAAGACCGATCGCCTCTTCTGATTGGA
CCACAGAGGAGCACGCGAGATTTTTGGAAGGTCTCAAGCAGTATGGAAGG
TCTTGGGAATCTATTTCAACCCTGCTTCTCCCAACCCGCACTCCAGAAGA
GATTAAAAACTACGCCTCGTTATATCTCGTGAATCAGCCCAAAGACTTGA
CCCCTCCCCGGACGGCGTCGACAAAAGGAAAGGATGGAGCGAGTGCTGCC
CGAGCCAAGGAAGGTCATTGGACGGACGAGGAGCACGAGTTCTTCCTGAA
ATGCTGGGCGAAGTACGGCAAATCGTGGAAAAAGATCTCCCAGGTCATGA
AGACGCGCAGCAATGAACAGATTCGAACCCATGCTCAAAAGTACTTTACC
AAACTGGATCAACTTCGGACGTGTGGGTACGAGGGCTCCTACACCATGGA
CGGTACGCGGCATTTGACCAAGACATTTTTAAAGAAGGCGCAATGTGAAG
GCCGGCTAGAGTCAGGTTCCTGGAGGTCGCGCTTCAAGCTAAAGAACCCT
AGAGGAGTCGCCAAAAGGCACGCTAACCGCAGGAAAAAGGTCCTCGCACG
AATTCGAGGGAGCAGCGGACGATCTCCATATGGCCATCGCCATTGGCGTT
ACGGGGATCATGTCGGAGAGGAGGGAGAGGAAGAAGGCGATGACGTTGAG
GAGGATGAGGAGAGTGGATCAGAGAGACTCGAGGGCGGACATGATGCAAC
GTCTGTGTGTGGCACTTTGTCCACCTACACCACTCGTAGCGGGCGCGTTG
TCACGTTCAGCCGACCCTCCCAGCATGTACAAGACACCAATAGCGAGGCA
GAGGAGAACGAAGAAAGATCCCATACTGCTGATGGGATATATGTAGGGGA
GATGCCCACTTATACGCACGATGAAAGTGCCTTGTTGGTGGAATCAGGAA
TGACAATTGACACCGGCGTCCACACGGGAAGGCTGGGGATGGCGATTGTC
CGAGACGATGATGTGAAAGAGCATCATGCGCCCAAGGAGGGATATGAGGA
GCTTTCTCGCGACGTCTCTGGCGTTTCGGCGTCTATTCCGACCCCGCGGA
CTATGGTAGATGTTTTGAGCGCTTTTACGATGGATCCGGAGGGCTTCCCT
CAATGGGAGTATAGCGGGCGTCGGGAACAAGGCGCGTCATTGCATCCCTG
GACAGAGAATGACACAGTGTCAGCTCGATCTGGCTCAGATGTCTTCGAAT
CCTCGACAAAATGTGTTCCTCAGGGATATGCTGCTCTCACGTCCTCCGTA
AGCAGTGCTGCTACCAGTGCTGCCAGCAACTTTTCAGACAGCAGCTGTGC
TGATGGCTTGAAAACGCAGAGAGACGACATGGTTATGATGATGTGTAGCG
CCGATGACAGCCTCTTCTGGGAATCCGAGAGCTACAACGAGGAACAGGAT
GACGACAATAGCCTCACTCGGCCCCCTGTTTCACCTAACGCAGATGCGGC
GAACGAGGAGTGGATATCCACGTTCGAGCAAGTCCCCTTCATGTGAACCA
AGCTGGGAAGGACGATATGCAATTAAAAAACTCAAGGTGGTGGGCAGGCA
GAACTTGAATTAGAGACCACCTTATTGAAAAAGGATACGTGGCTTAATCA
GCGTTTGCGCCGCATGTGATACAGATGCTGGGTTGGGTTATGCATTATTA
CATTTTTTTTCGATATAGGAGTCTAATAGTTGCAGGCCTGTGACGGAAAA
GAGATCCTCCCTGAGTGTTGGTCTTACGCATCTTTTCTGTGCACTCGCAT
GTAAGACAACATGTATCAAAGGCAGGCATACAGCATACAATAGATAGGGA
TGTATACTAAAACCGTGTGGATACTAGATAATAGACAAATTTTAGATATA
CAGGAAGGTATACAAGCAGGCTTTCGCCTATCGAGCGTATGCCTGAAGTA
CATGCATCGATTTGTAAATGAAGCGCTCGTCCCCTAATCTGGCAAAAGAT
TTCTAACGCAAATTAAAAA

protein sequence of rna5715

>rna5715-protein ID=rna5715-protein|Name=rna5715|organism=Nannochloropsis gaditana|type=polypeptide|length=891bp
MAPTGMGRTGKSGNSNVMPTLRTSAEGPPSTRSNTTKMAGTISKLDAEAF
EKASKIIKKKFCEQVQLDDLPELRNDYKKKLSSLELQLSGMVQVKLDGVK
RSMDVIQTANDQMVAVRGEFEGMYELCRKAGEQGKVLFDAYPRLKMINRA
RKNLERTLKEVTYYANLPARVDHLVGLLEKQPMQLRQVHLEGQQLELWRD
ELLRELKVQQGSKTMAPPPSKSGIGGPSRVVSVGDRMQATFGIHLEEVKK
LLDAIRKKIFDNISNCFEIVQLDPRILTSTLEIVDMHAAFQKQKATRARE
RAEKNSEDVEEAVALSLLEDLRADLMSKLKQRVDDRASVMFAQTQAEAIA
KEASVTTAGDASHVQPDVFAATLGAATRILVDLNYLKAEVAPCFPDDYMV
MDTFRMQYERCLVKEICKLYQGGFSKLDQGELLQLMEWLDYYNQAIVHLG
ARTPCSEFVQALSICLQEYLVRVRIQMTEWFTNILNRVQEVAVNSAGQPI
TSTPEDFFNIIHLQVLVALSKLSADNMCAVIVVCLNVIKTILEETLTTLR
DKKLELAFPPTMAKERQREGDPVTLEMMCATVNDYDRLQEKIQEFREELG
LMGKLSEEHLVMVDAAVDHVLDGFVSIADEANSGCTQLVLEDVREAFAEE
LFTAEWEDSVDVMMQKVAMTFHDYYSDLSVWLPPFYFARLVKECLEKVMA
LYLFFLFRRGGAKGKDEKAVVKSRPFADPLVVAQKLRNDREAMAIFFDDY
EEQLRIAGLREPAALELQLAVLDHIVDLFEGGVTLETDATDALLREFGPW
GVDALLAISFLRGDKDKTGLDLKERLKRHCARTIRPTLRGAGGQAGLSNF
TYDGAAEAPRNFSARFSLSPFDSEVDAEAIVIGVKRLKAKK

mRNA from alignment at CM002466.1:656191..658980-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5715 ID=rna5715|Name=rna5715|organism=Nannochloropsis gaditana|type=mRNA|length=2790bp|location=Sequence derived from alignment at CM002466.1:656191..658980- (Nannochloropsis gaditana)
CAAGATCTCTTGACAGTGTGGCCATGGCGCCGACTGGAATGGGCAGAACC
GGGAAAAGCGGAAACAGCAATGTCATGCCAACCCTCCGCACGTCAGCAGA
GGGGCCGCCAAGCACACGAAGCAACACAACGAAAATGGCTGGCACAATTT
CCAAACTAGACGCAGAGGCGTTTGAGAAGGCCAGCAAGATCATTAAAAAG
AAATTTTGTGAACAGGTACAGCTGGATGACTTACCAGAGCTCCGGAATGA
TTATAAAAAGAAGCTCTCTTCCCTGGAATTGCAACTTAGCGGAATGGTTC
AGGTCAAACTCGATGGAGTCAAGCGCTCCATGGACGTGATCCAGACGGCA
AATGACCAGATGGTCGCAGTTCGCGGTGAATTTGAGGGCATGTATGAACT
CTGTCGCAAGGCAGGTGAGCAAGGTAAAGTCTTGTTCGACGCTTACCCGC
GATTGAAAATGATTAATCGGGCTCGCAAAAACTTGGAGCGAACGCTCAAA
GAAGTCACTTATTACGCAAACTTGCCTGCACGAGTGGATCATCTCGTCGG
GCTCTTAGAGAAGCAGCCCATGCAGCTCCGTCAAGTGCATTTGGAAGGAC
AGCAATTGGAGCTGTGGCGAGACGAGCTTTTGCGGGAGCTGAAAGTCCAA
CAGGGGAGTAAGACGATGGCTCCGCCTCCATCCAAGTCCGGCATCGGAGG
CCCCTCACGTGTCGTCTCTGTCGGGGACCGCATGCAAGCTACCTTCGGGA
TCCACCTAGAGGAGGTCAAAAAGCTGCTGGATGCCATTCGGAAGAAGATT
TTTGACAACATTTCGAATTGCTTTGAGATTGTACAACTCGACCCCCGCAT
TTTGACCTCCACTTTGGAGATTGTGGACATGCACGCAGCATTTCAGAAGC
AAAAAGCAACGCGTGCCCGAGAACGTGCCGAGAAGAATTCAGAGGACGTG
GAGGAAGCCGTCGCGCTCTCGTTGCTGGAGGACCTACGAGCAGATCTGAT
GTCCAAGCTGAAGCAGAGGGTAGATGACCGGGCCTCGGTCATGTTCGCCC
AGACACAAGCAGAGGCGATCGCCAAGGAAGCAAGCGTGACAACCGCGGGA
GACGCTTCGCATGTGCAGCCGGACGTCTTTGCGGCTACGCTCGGCGCGGC
AACCCGTATTTTGGTCGACCTCAACTATCTGAAAGCCGAGGTAGCGCCCT
GCTTTCCTGACGATTACATGGTTATGGATACCTTTAGAATGCAATACGAA
CGATGTTTGGTGAAAGAAATTTGTAAATTGTATCAAGGAGGCTTCTCGAA
ATTGGATCAGGGGGAACTATTGCAATTGATGGAGTGGCTTGATTACTACA
ACCAGGCCATTGTGCACCTTGGCGCCCGGACGCCGTGTTCGGAATTTGTG
CAGGCGCTGTCCATCTGCTTACAGGAATACCTTGTCCGTGTCCGCATTCA
AATGACCGAATGGTTCACGAACATACTGAATCGGGTCCAGGAGGTGGCCG
TGAACTCGGCCGGGCAACCGATCACAAGCACTCCTGAGGATTTCTTTAAC
ATCATCCATCTCCAGGTGTTGGTTGCGCTTTCCAAACTCTCTGCCGATAA
CATGTGTGCAGTCATTGTGGTCTGTTTGAACGTGATCAAAACCATCTTGG
AGGAGACACTAACGACGCTGCGGGACAAGAAATTAGAGCTCGCGTTCCCC
CCAACAATGGCTAAAGAGCGCCAGAGAGAGGGCGACCCGGTAACTCTAGA
GATGATGTGCGCGACTGTGAACGACTACGATCGCCTCCAGGAGAAGATCC
AAGAATTTCGGGAGGAACTAGGGCTGATGGGGAAGCTGAGCGAGGAGCAC
CTCGTAATGGTGGACGCGGCCGTGGACCATGTCCTAGATGGCTTCGTCAG
CATCGCCGATGAGGCAAATTCCGGATGTACGCAACTGGTTCTAGAGGACG
TGCGGGAGGCATTTGCTGAAGAGTTGTTCACGGCGGAGTGGGAGGATAGC
GTGGACGTGATGATGCAGAAGGTAGCCATGACCTTTCATGACTACTACAG
CGACCTGTCTGTCTGGCTACCTCCTTTTTATTTCGCGCGGCTCGTAAAAG
AATGCTTGGAAAAAGTCATGGCGCTCTATCTTTTCTTCTTGTTTCGACGA
GGCGGGGCGAAGGGCAAGGACGAAAAGGCGGTCGTAAAGTCGAGGCCTTT
TGCAGATCCATTGGTCGTCGCACAGAAGCTCCGTAACGACCGAGAGGCAA
TGGCAATCTTCTTCGATGACTACGAGGAGCAGCTCAGGATCGCTGGGCTG
CGGGAACCGGCTGCACTGGAGTTGCAACTCGCTGTGCTCGACCACATTGT
AGACCTTTTCGAAGGAGGCGTGACACTAGAGACAGACGCCACCGATGCGC
TGCTTCGCGAGTTCGGCCCATGGGGAGTGGATGCCTTGCTGGCGATCTCT
TTCCTAAGAGGAGACAAGGACAAGACGGGGTTGGATCTCAAAGAACGTTT
AAAGAGGCACTGTGCGCGTACCATCCGTCCTACGTTGAGAGGGGCGGGAG
GACAGGCTGGCCTGTCAAATTTTACATATGACGGTGCAGCCGAGGCACCC
AGGAACTTCTCGGCTCGCTTTTCGCTCTCGCCTTTTGACAGTGAGGTGGA
CGCAGAGGCAATAGTTATTGGCGTCAAGCGGCTCAAAGCCAAAAAGTAAA
CAAAGAAATGTACTGTAAAGGTCAGGAGATCCAAGCTTTCGATTGACCTG
CGAAAGCTCTTTTAAATCAAGTCACAGCCGACGCCTTTTA

Coding sequence (CDS) from alignment at CM002466.1:656191..658980-

>rna5715 ID=rna5715|Name=rna5715|organism=Nannochloropsis gaditana|type=CDS|length=2676bp|location=Sequence derived from alignment at CM002466.1:656191..658980- (Nannochloropsis gaditana)
ATGGCGCCGACTGGAATGGGCAGAACCGGGAAAAGCGGAAACAGCAATGT
CATGCCAACCCTCCGCACGTCAGCAGAGGGGCCGCCAAGCACACGAAGCA
ACACAACGAAAATGGCTGGCACAATTTCCAAACTAGACGCAGAGGCGTTT
GAGAAGGCCAGCAAGATCATTAAAAAGAAATTTTGTGAACAGGTACAGCT
GGATGACTTACCAGAGCTCCGGAATGATTATAAAAAGAAGCTCTCTTCCC
TGGAATTGCAACTTAGCGGAATGGTTCAGGTCAAACTCGATGGAGTCAAG
CGCTCCATGGACGTGATCCAGACGGCAAATGACCAGATGGTCGCAGTTCG
CGGTGAATTTGAGGGCATGTATGAACTCTGTCGCAAGGCAGGTGAGCAAG
GTAAAGTCTTGTTCGACGCTTACCCGCGATTGAAAATGATTAATCGGGCT
CGCAAAAACTTGGAGCGAACGCTCAAAGAAGTCACTTATTACGCAAACTT
GCCTGCACGAGTGGATCATCTCGTCGGGCTCTTAGAGAAGCAGCCCATGC
AGCTCCGTCAAGTGCATTTGGAAGGACAGCAATTGGAGCTGTGGCGAGAC
GAGCTTTTGCGGGAGCTGAAAGTCCAACAGGGGAGTAAGACGATGGCTCC
GCCTCCATCCAAGTCCGGCATCGGAGGCCCCTCACGTGTCGTCTCTGTCG
GGGACCGCATGCAAGCTACCTTCGGGATCCACCTAGAGGAGGTCAAAAAG
CTGCTGGATGCCATTCGGAAGAAGATTTTTGACAACATTTCGAATTGCTT
TGAGATTGTACAACTCGACCCCCGCATTTTGACCTCCACTTTGGAGATTG
TGGACATGCACGCAGCATTTCAGAAGCAAAAAGCAACGCGTGCCCGAGAA
CGTGCCGAGAAGAATTCAGAGGACGTGGAGGAAGCCGTCGCGCTCTCGTT
GCTGGAGGACCTACGAGCAGATCTGATGTCCAAGCTGAAGCAGAGGGTAG
ATGACCGGGCCTCGGTCATGTTCGCCCAGACACAAGCAGAGGCGATCGCC
AAGGAAGCAAGCGTGACAACCGCGGGAGACGCTTCGCATGTGCAGCCGGA
CGTCTTTGCGGCTACGCTCGGCGCGGCAACCCGTATTTTGGTCGACCTCA
ACTATCTGAAAGCCGAGGTAGCGCCCTGCTTTCCTGACGATTACATGGTT
ATGGATACCTTTAGAATGCAATACGAACGATGTTTGGTGAAAGAAATTTG
TAAATTGTATCAAGGAGGCTTCTCGAAATTGGATCAGGGGGAACTATTGC
AATTGATGGAGTGGCTTGATTACTACAACCAGGCCATTGTGCACCTTGGC
GCCCGGACGCCGTGTTCGGAATTTGTGCAGGCGCTGTCCATCTGCTTACA
GGAATACCTTGTCCGTGTCCGCATTCAAATGACCGAATGGTTCACGAACA
TACTGAATCGGGTCCAGGAGGTGGCCGTGAACTCGGCCGGGCAACCGATC
ACAAGCACTCCTGAGGATTTCTTTAACATCATCCATCTCCAGGTGTTGGT
TGCGCTTTCCAAACTCTCTGCCGATAACATGTGTGCAGTCATTGTGGTCT
GTTTGAACGTGATCAAAACCATCTTGGAGGAGACACTAACGACGCTGCGG
GACAAGAAATTAGAGCTCGCGTTCCCCCCAACAATGGCTAAAGAGCGCCA
GAGAGAGGGCGACCCGGTAACTCTAGAGATGATGTGCGCGACTGTGAACG
ACTACGATCGCCTCCAGGAGAAGATCCAAGAATTTCGGGAGGAACTAGGG
CTGATGGGGAAGCTGAGCGAGGAGCACCTCGTAATGGTGGACGCGGCCGT
GGACCATGTCCTAGATGGCTTCGTCAGCATCGCCGATGAGGCAAATTCCG
GATGTACGCAACTGGTTCTAGAGGACGTGCGGGAGGCATTTGCTGAAGAG
TTGTTCACGGCGGAGTGGGAGGATAGCGTGGACGTGATGATGCAGAAGGT
AGCCATGACCTTTCATGACTACTACAGCGACCTGTCTGTCTGGCTACCTC
CTTTTTATTTCGCGCGGCTCGTAAAAGAATGCTTGGAAAAAGTCATGGCG
CTCTATCTTTTCTTCTTGTTTCGACGAGGCGGGGCGAAGGGCAAGGACGA
AAAGGCGGTCGTAAAGTCGAGGCCTTTTGCAGATCCATTGGTCGTCGCAC
AGAAGCTCCGTAACGACCGAGAGGCAATGGCAATCTTCTTCGATGACTAC
GAGGAGCAGCTCAGGATCGCTGGGCTGCGGGAACCGGCTGCACTGGAGTT
GCAACTCGCTGTGCTCGACCACATTGTAGACCTTTTCGAAGGAGGCGTGA
CACTAGAGACAGACGCCACCGATGCGCTGCTTCGCGAGTTCGGCCCATGG
GGAGTGGATGCCTTGCTGGCGATCTCTTTCCTAAGAGGAGACAAGGACAA
GACGGGGTTGGATCTCAAAGAACGTTTAAAGAGGCACTGTGCGCGTACCA
TCCGTCCTACGTTGAGAGGGGCGGGAGGACAGGCTGGCCTGTCAAATTTT
ACATATGACGGTGCAGCCGAGGCACCCAGGAACTTCTCGGCTCGCTTTTC
GCTCTCGCCTTTTGACAGTGAGGTGGACGCAGAGGCAATAGTTATTGGCG
TCAAGCGGCTCAAAGCCAAAAAGTAA

Synonyms

Publications