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Properties
| Property Name | Value |
|---|
| Product | 30s ribosomal protein s18 |
| Orig transcript id | gnl|cribi|Naga_100122g3.3571.mrna |
| Orig protein id | gnl|cribi|Naga_100122g3.3571 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:640781..642444 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5711 ID=rna5711|Name=rna5711|organism=Nannochloropsis gaditana|type=mRNA|length=1440bp
CTTGGCCATGGGACGGAAGGAGAAGGTGTGCTGGGAGGCCGTAGGGCGCA
CCGTCCGGGAGAAAGTTCGAAGTCCTTCGTCCTCATCATCTTGTTTGGAG
CGCTTTGTTGGCAGCAGTGTCGCATGCACACTTGCGCTTGCAATGCGGTT
GTGGTACGGAAGGACGCCATTTAACCGGTACTCGCCCTGGTTTGAGGATA
TAGCCATTCGCCTTTCATCACACCATCGCATTCGCATATTTCTCAGAACA
GGTCGTGCCTGTTATGATACTCCGAAATTTTGCGCTATTAAATTCTAGGG
CCGGCACGATTTCGTCCCGAGCCGTAATTTGTCAGGCCCGGAACCTCGCA
GCTGCAGGGCGGGGTGCTGGCAAAGGTGGTTCTGGTAGAGACGGGGAATA
TGGCGGAGACAGCGACGCCACGGCAACATCAGATGCTGCCGCAGCAGCTA
TCAAAGAGAAAGATCCTTTTGGTTTTAGGGAACTGAAAGCTAAGTGGAAG
AACTCGGAAATCGGCGGACATGGGTCCCCTGATATGCGCGAGGAGGATGC
GGAGGCCATCGAGACGGAGATGGAGAAGACTGGTCGCGTCACAGTGCCAA
GAAACATCTTTGGAATCAAGCATATTAGCAAAGAAATGACGGAGGCATGG
GAAGAGGGCCTCCTGCCCCCACAACTCTATCCGCGTGCCGCTGGGTTAGA
GGGTCCTCCAGACTTCTACTGGCCAAGCAATCTGGAGACGACGCTCCCAG
ATGAGAGCGATCGCCTGTATCCTGCCGGCGGAGAACGCGTCTTTTCCCCG
GAGGAAGTGAGGGCTATGAATGAGGCAGAGGTCGGGGGTGTTTGTCGTGG
GAAGCTGCAACGGCGGGGAAACCAGCCATTGCTATGCAAGAAAATCGACC
TGGGAGAGCTGGAGTTCAGCAACGTGGCCGTTCTCGCCCAGTTCGTTTCG
CCCCTGGGGATGATCAAGCCGCGGCGCATGTCAGGATTGTGTGCGAAATG
CCAACGAAAGGTGGCGCGCACGATAAAGCAGGCCCGGCATCTGGGGGTGT
TGCCTCACACATACGGTGTGGATTTGTATCAACGGCTGAAGATGAAGGGA
GAGGGGGTGGGGCCCGACGGGAAGAAACCCTTTTTGTGGAGGAAGGGGGA
CGCTGTAGAGGAGAAGGAAAAGAAGAGGGAAGAGCTCTTGAAGCAGACAC
CAAGTCTGACCATATAGATCAAGTGTAGGGAAGTAGTCAAAGAGAGATGT
GATGGGTTGGTAGCAGTGGTAAAGTGGAAATGAACAACAAAGAAAAAGTG
TGCGCATGACATCTTGGGATGCTAATTCAGGGCTGAAATTATTCGACTGC
TATTGCCCGACAGAGTCGCACCGATGAGTTTGACACTCAGTTTGTACACC
ACTCATCGATTAGAGAGTCGGCCCGTGACTTTTGACTCCT back to topprotein sequence of rna5711 >rna5711-protein ID=rna5711-protein|Name=rna5711|organism=Nannochloropsis gaditana|type=polypeptide|length=237bp
MCPALLALKAPTEVMWTFKFCYIQTACLWHHNSWAQPWLSYIAAGPALGP
LTVLAPPRFFSSNHREGPPDFYWPSNLETTLPDESDRLYPAGGERVFSPE
EVRAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSP
LGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGE
GVGPDGKKPFLWRKGDAVEEKEKKREELLKQTPSLTI back to topmRNA from alignment at CM002466.1:640781..642444- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna5711 ID=rna5711|Name=rna5711|organism=Nannochloropsis gaditana|type=mRNA|length=1664bp|location=Sequence derived from alignment at CM002466.1:640781..642444- (Nannochloropsis gaditana)
CTTGGCCATGGGACGGAAGGAGAAGGTGTGCTGGGAGGCCGTAGGGCGCA
CCGTCCGGGAGAAAGTTCGAAGTCCTTCGTCCTCATCATCTTGTTTGGAG
CGCTTTGTTGGCAGCAGTGTCGCATGCACACTTGCGCTTGCAATGCGGTT
GTGGTACGGAAGGACGCCATTTAACCGGTACTCGCCCTGGTTTGAGGATA
TAGCCATTCGCCTTTCATCACACCATCGCATTCGCATATTTCTCAGAACA
GGTCGTGCCTGTTATGATACTCCGAAATTTTGCGCTATTAAATTCTAGGG
CCGGCACGATTTCGTCCCGAGCCGTAATTTGTCAGGCCCGGAACCTCGCA
GCTGCAGGGCGGGGTGCTGGCAAAGGTGGTTCTGGTAGAGACGGGGAATA
TGGCGGAGACAGCGACGCCACGGCAACATCAGATGCTGCCGCAGCAGCTA
TCAAAGAGAAAGATCCTTTTGGTTTTAGGGAACTGAAAGCTAAGTGGAAG
AACTCGGAAATCGGCGGACATGGGTCCCCTGATATGCGCGAGGAGGATGC
GGAGGCCATCGAGACGGAGATGGAGAAGACTGGTCGCGTCACAGTGCCAA
GAAACATCTTTGGAATCAAGCATATTAGCAAAGAAATGACGGAGGCATGG
GAAGAGGGCCTCCTGCCCCCACAACTCTATCCGCGTGCCGCTGGGTTGTA
AGTATGATCCTTTAAACCAGAACCATCATGTGTCCCGCCCTTCTCGCCTT
AAAGGCTCCTACTGAAGTGATGTGGACTTTTAAATTTTGTTACATCCAAA
CAGCATGTCTCTGGCATCATAACTCGTGGGCGCAACCCTGGCTCTCTTAC
ATTGCTGCTGGTCCCGCTCTCGGTCCACTCACTGTCCTGGCTCCTCCCCG
CTTTTTTTCCTCCAACCACAGAGAGGGTCCTCCAGACTTCTACTGGCCAA
GCAATCTGGAGACGACGCTCCCAGATGAGAGCGATCGCCTGTATCCTGCC
GGCGGAGAACGCGTCTTTTCCCCGGAGGAAGTGAGGGCTATGAATGAGGC
AGAGGTCGGGGGTGTTTGTCGTGGGAAGCTGCAACGGCGGGGAAACCAGC
CATTGCTATGCAAGAAAATCGACCTGGGAGAGCTGGAGTTCAGCAACGTG
GCCGTTCTCGCCCAGTTCGTTTCGCCCCTGGGGATGATCAAGCCGCGGCG
CATGTCAGGATTGTGTGCGAAATGCCAACGAAAGGTGGCGCGCACGATAA
AGCAGGCCCGGCATCTGGGGGTGTTGCCTCACACATACGGTGTGGATTTG
TATCAACGGCTGAAGATGAAGGGAGAGGGGGTGGGGCCCGACGGGAAGAA
ACCCTTTTTGTGGAGGAAGGGGGACGCTGTAGAGGAGAAGGAAAAGAAGA
GGGAAGAGCTCTTGAAGCAGACACCAAGTCTGACCATATAGATCAAGTGT
AGGGAAGTAGTCAAAGAGAGATGTGATGGGTTGGTAGCAGTGGTAAAGTG
GAAATGAACAACAAAGAAAAAGTGTGCGCATGACATCTTGGGATGCTAAT
TCAGGGCTGAAATTATTCGACTGCTATTGCCCGACAGAGTCGCACCGATG
AGTTTGACACTCAGTTTGTACACCACTCATCGATTAGAGAGTCGGCCCGT
GACTTTTGACTCCT back to topCoding sequence (CDS) from alignment at CM002466.1:640781..642444- >rna5711 ID=rna5711|Name=rna5711|organism=Nannochloropsis gaditana|type=CDS|length=714bp|location=Sequence derived from alignment at CM002466.1:640781..642444- (Nannochloropsis gaditana)
ATGTGTCCCGCCCTTCTCGCCTTAAAGGCTCCTACTGAAGTGATGTGGAC
TTTTAAATTTTGTTACATCCAAACAGCATGTCTCTGGCATCATAACTCGT
GGGCGCAACCCTGGCTCTCTTACATTGCTGCTGGTCCCGCTCTCGGTCCA
CTCACTGTCCTGGCTCCTCCCCGCTTTTTTTCCTCCAACCACAGAGAGGG
TCCTCCAGACTTCTACTGGCCAAGCAATCTGGAGACGACGCTCCCAGATG
AGAGCGATCGCCTGTATCCTGCCGGCGGAGAACGCGTCTTTTCCCCGGAG
GAAGTGAGGGCTATGAATGAGGCAGAGGTCGGGGGTGTTTGTCGTGGGAA
GCTGCAACGGCGGGGAAACCAGCCATTGCTATGCAAGAAAATCGACCTGG
GAGAGCTGGAGTTCAGCAACGTGGCCGTTCTCGCCCAGTTCGTTTCGCCC
CTGGGGATGATCAAGCCGCGGCGCATGTCAGGATTGTGTGCGAAATGCCA
ACGAAAGGTGGCGCGCACGATAAAGCAGGCCCGGCATCTGGGGGTGTTGC
CTCACACATACGGTGTGGATTTGTATCAACGGCTGAAGATGAAGGGAGAG
GGGGTGGGGCCCGACGGGAAGAAACCCTTTTTGTGGAGGAAGGGGGACGC
TGTAGAGGAGAAGGAAAAGAAGAGGGAAGAGCTCTTGAAGCAGACACCAA
GTCTGACCATATAG back to top
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