EWM24984.1, cds5696 (CDS) Nannochloropsis gaditana

Overview
NameEWM24984.1
Unique Namecds5696
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:641004..641717 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24984.1
Product30s ribosomal protein s18
Orig transcript idgnl|cribi|Naga_100122g3.3571.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:641004..641717 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003723RNA binding
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR001648Ribosomal_S18
Homology
BLAST of EWM24984.1 vs. NCBI_GenBank
Match: gi|585106617|gb|EWM24984.1| (30s ribosomal protein s18 [Nannochloropsis gaditana])

HSP 1 Score: 491.115 bits (1263), Expect = 9.208e-176
Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0
Query:    1 MCPALLALKAPTEVMWTFKFCYIQTACLWHHNSWAQPWLSYIAAGPALGPLTVLAPPRFFSSNHREGPPDFYWPSNLETTLPDESDRLYPAGGERVFSPEEVRAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGEGVGPDGKKPFLWRKGDAVEEKEKKREELLKQTPSLTI 237
            MCPALLALKAPTEVMWTFKFCYIQTACLWHHNSWAQPWLSYIAAGPALGPLTVLAPPRFFSSNHREGPPDFYWPSNLETTLPDESDRLYPAGGERVFSPEEVRAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGEGVGPDGKKPFLWRKGDAVEEKEKKREELLKQTPSLTI
Sbjct:    1 MCPALLALKAPTEVMWTFKFCYIQTACLWHHNSWAQPWLSYIAAGPALGPLTVLAPPRFFSSNHREGPPDFYWPSNLETTLPDESDRLYPAGGERVFSPEEVRAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGEGVGPDGKKPFLWRKGDAVEEKEKKREELLKQTPSLTI 237          
BLAST of EWM24984.1 vs. NCBI_GenBank
Match: gi|585106616|gb|EWM24983.1| (30s ribosomal protein s18 [Nannochloropsis gaditana])

HSP 1 Score: 329.717 bits (844), Expect = 1.063e-110
Identity = 175/185 (94.59%), Postives = 178/185 (96.22%), Query Frame = 0
Query:   54 LAPPRFF-SSNHREGPPDFYWPSNLETTLPDESDRLYPAGGERVFSPEEVRAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGEGVGPDGKKPFLWRKGDAVEEKEKKREELLKQTPSLTI 237
            L PP+ +  +   EGPPDFYWPSNLETTLPDESDRLYPAGGERVFSPEEVRAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGEGVGPDGKKPFLWRKGDAVEEKEKKREELLKQTPSLTI
Sbjct:  133 LLPPQLYPRAAGLEGPPDFYWPSNLETTLPDESDRLYPAGGERVFSPEEVRAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGEGVGPDGKKPFLWRKGDAVEEKEKKREELLKQTPSLTI 317          
BLAST of EWM24984.1 vs. NCBI_GenBank
Match: gi|1088205159|gb|OHA63786.1| (30S ribosomal protein S18 [Candidatus Wildermuthbacteria bacterium RIFCSPHIGHO2_01_FULL_47_27] >gi|1088210573|gb|OHA68923.1| 30S ribosomal protein S18 [Candidatus Wildermuthbacteria bacterium RIFCSPHIGHO2_02_FULL_47_17] >gi|1088217502|gb|OHA75498.1| 30S ribosomal protein S18 [Candidatus Wildermuthbacteria bacterium RIFCSPLOWO2_02_FULL_47_10] >gi|1088217531|gb|OHA75526.1| 30S ribosomal protein S18 [Candidatus Wildermuthbacteria bacterium RIFCSPLOWO2_01_FULL_48_35])

HSP 1 Score: 66.2402 bits (160), Expect = 4.898e-11
Identity = 30/59 (50.85%), Postives = 43/59 (72.88%), Query Frame = 0
Query:  127 LCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPH 185
             CK    GE++F   A+L +F+S L  I+ RR +G+CAK QRK+A+ IK+ARH+G+LPH
Sbjct:    5 FCKNTS-GEIDFKETALLRRFISGLAKIRARRRTGVCAKHQRKLAQAIKRARHMGLLPH 62          
BLAST of EWM24984.1 vs. NCBI_GenBank
Match: gi|517277794|ref|WP_018466612.1| (30S ribosomal protein S18 [Meiothermus timidus])

HSP 1 Score: 66.6254 bits (161), Expect = 7.819e-11
Identity = 33/68 (48.53%), Postives = 48/68 (70.59%), Query Frame = 0
Query:  120 RRGNQPLLCKKIDLGEL-EFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHT 186
            RRG +P +   +   +L ++ NV +L +F+S  G I PRR +GL A+ QRK+ARTIK+ARHLG+LP+ 
Sbjct:   21 RRGRKPKVAAAVGAFDLNDYKNVDILKRFLSETGKILPRRRTGLNAQDQRKLARTIKRARHLGLLPYV 88          
BLAST of EWM24984.1 vs. NCBI_GenBank
Match: gi|931381479|gb|KPJ71784.1| (30S ribosomal protein S18 [Parcubacteria bacterium DG_74_3])

HSP 1 Score: 65.855 bits (159), Expect = 7.993e-11
Identity = 28/60 (46.67%), Postives = 47/60 (78.33%), Query Frame = 0
Query:  127 LCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHT 186
             C K ++GE+++ +  +L +F+S LG I+ R+ +GLC+K QR+++R IK+ARHLG+LP+T
Sbjct:    5 FCVK-NMGEIDYKDSDLLKRFISGLGKIRSRKRTGLCSKHQRELSRAIKRARHLGLLPYT 63          
BLAST of EWM24984.1 vs. NCBI_GenBank
Match: gi|1028573822|gb|OAJ42126.1| (ribosomal protein S18 [Batrachochytrium dendrobatidis JEL423])

HSP 1 Score: 67.781 bits (164), Expect = 1.242e-10
Identity = 45/138 (32.61%), Postives = 78/138 (56.52%), Query Frame = 0
Query:   58 RFFSSNHREGPPDFYWPSNLETTLPDESDRLYPA--GGERVFSPEEV---RAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGEL-EFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGV 189
            RFFS+N  +G    +     +T   D   R +    G  +VF P+E    R +N+  +    + KL    ++ +L KK+ +  + E+ NV +L+ F++ +G IKPR  +GL  + QR+V+R IK+AR +G++P+TY +
Sbjct:   26 RFFSTNRTQGA---HGVHGFQTYGEDARAREFKVDMGQRQVFKPKETYMPRDLNDRNLEMYTK-KLDLPPSEDIL-KKLGIDPIKEYRNVNMLSHFITAIGHIKPRHKTGLTLENQRRVSRAIKRARAMGLMPYTYSI 158          
BLAST of EWM24984.1 vs. NCBI_GenBank
Match: gi|654415407|ref|WP_027886793.1| (MULTISPECIES: 30S ribosomal protein S18 [Meiothermus] >gi|756400318|gb|KIQ55084.1| 30S ribosomal protein S18 [Meiothermus ruber] >gi|1019984932|gb|KZK15965.1| 30S ribosomal protein S18 [Meiothermus taiwanensis])

HSP 1 Score: 65.4698 bits (158), Expect = 1.706e-10
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 0
Query:  120 RRGNQPLLCKKIDLGEL-EFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHT 186
            RRG +P +   +   +L +F NV VL +F+S  G I PRR +GL A+ QRK+ARTIK+AR LG+LP T
Sbjct:   19 RRGRKPKVAAAVGAFDLTDFKNVEVLRRFLSETGKILPRRRTGLSAQEQRKLARTIKRARMLGLLPFT 86          
BLAST of EWM24984.1 vs. NCBI_GenBank
Match: gi|298712822|emb|CBJ48787.1| (putative 30S ribosomal protein S18 [Ectocarpus siliculosus])

HSP 1 Score: 70.4774 bits (171), Expect = 1.929e-10
Identity = 45/118 (38.14%), Postives = 63/118 (53.39%), Query Frame = 0
Query:  114 CRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGEG-----VGPDGKKPFLWRKGDAVEEKEKKRE 226
            C GK Q +   P  C+  D+ EL  ++  +L +FV+  GMI  R  +GLCAKCQRKVA T+K AR +G++P    V  Y+ ++  G G      G DG    + +   A E   KK E
Sbjct:  278 CPGKKQGKAALPSTCQIFDVKELHVNHTPLLKRFVNDAGMILGRYRTGLCAKCQRKVAHTVKAARQMGLVPT---VSDYE-VRDTGPGGLYAWAGKDGDHDAMAKAKVAAEMARKKSE 391          
BLAST of EWM24984.1 vs. NCBI_GenBank
Match: gi|1194657949|ref|WP_085986633.1| (30S ribosomal protein S18 [Meiothermus ruber])

HSP 1 Score: 64.6994 bits (156), Expect = 2.763e-10
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 0
Query:  120 RRGNQPLLCKKIDLGEL-EFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHT 186
            RRG +P +   +   +L +F NV VL +F+S  G I PRR +GL A+ QRK+ARTIK+AR LG+LP T
Sbjct:    2 RRGRKPKVAAAVGAFDLTDFKNVEVLRRFLSETGKILPRRRTGLNAQEQRKLARTIKRARMLGLLPFT 69          
BLAST of EWM24984.1 vs. NCBI_GenBank
Match: gi|502779062|ref|WP_013014038.1| (30S ribosomal protein S18 [Meiothermus ruber] >gi|290471117|gb|ADD28536.1| ribosomal protein S18 [Meiothermus ruber DSM 1279] >gi|481062858|gb|AGK06021.1| 30S ribosomal protein S18 [Meiothermus ruber DSM 1279])

HSP 1 Score: 64.6994 bits (156), Expect = 3.247e-10
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 0
Query:  120 RRGNQPLLCKKIDLGEL-EFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHT 186
            RRG +P +   +   +L +F NV VL +F+S  G I PRR +GL A+ QRK+ARTIK+AR LG+LP T
Sbjct:   19 RRGRKPKVAAAVGAFDLTDFKNVEVLRRFLSETGKILPRRRTGLNAQEQRKLARTIKRARMLGLLPFT 86          
The following BLAST results are available for this feature:
BLAST of EWM24984.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106617|gb|EWM24984.1|9.208e-176100.0030s ribosomal protein s18 [Nannochloropsis gaditan... [more]
gi|585106616|gb|EWM24983.1|1.063e-11094.5930s ribosomal protein s18 [Nannochloropsis gaditan... [more]
gi|1088205159|gb|OHA63786.1|4.898e-1150.8530S ribosomal protein S18 [Candidatus Wildermuthba... [more]
gi|517277794|ref|WP_018466612.1|7.819e-1148.5330S ribosomal protein S18 [Meiothermus timidus][more]
gi|931381479|gb|KPJ71784.1|7.993e-1146.6730S ribosomal protein S18 [Parcubacteria bacterium... [more]
gi|1028573822|gb|OAJ42126.1|1.242e-1032.61ribosomal protein S18 [Batrachochytrium dendrobati... [more]
gi|654415407|ref|WP_027886793.1|1.706e-1051.47MULTISPECIES: 30S ribosomal protein S18 [Meiotherm... [more]
gi|298712822|emb|CBJ48787.1|1.929e-1038.14putative 30S ribosomal protein S18 [Ectocarpus sil... [more]
gi|1194657949|ref|WP_085986633.1|2.763e-1051.4730S ribosomal protein S18 [Meiothermus ruber][more]
gi|502779062|ref|WP_013014038.1|3.247e-1051.4730S ribosomal protein S18 [Meiothermus ruber] >gi|... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5711rna5711Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications