EWM24984.1, cds5696 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24984.1 vs. NCBI_GenBank
Match: gi|585106617|gb|EWM24984.1| (30s ribosomal protein s18 [Nannochloropsis gaditana]) HSP 1 Score: 491.115 bits (1263), Expect = 9.208e-176 Identity = 237/237 (100.00%), Postives = 237/237 (100.00%), Query Frame = 0
Query: 1 MCPALLALKAPTEVMWTFKFCYIQTACLWHHNSWAQPWLSYIAAGPALGPLTVLAPPRFFSSNHREGPPDFYWPSNLETTLPDESDRLYPAGGERVFSPEEVRAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGEGVGPDGKKPFLWRKGDAVEEKEKKREELLKQTPSLTI 237
MCPALLALKAPTEVMWTFKFCYIQTACLWHHNSWAQPWLSYIAAGPALGPLTVLAPPRFFSSNHREGPPDFYWPSNLETTLPDESDRLYPAGGERVFSPEEVRAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGEGVGPDGKKPFLWRKGDAVEEKEKKREELLKQTPSLTI
Sbjct: 1 MCPALLALKAPTEVMWTFKFCYIQTACLWHHNSWAQPWLSYIAAGPALGPLTVLAPPRFFSSNHREGPPDFYWPSNLETTLPDESDRLYPAGGERVFSPEEVRAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGEGVGPDGKKPFLWRKGDAVEEKEKKREELLKQTPSLTI 237
BLAST of EWM24984.1 vs. NCBI_GenBank
Match: gi|585106616|gb|EWM24983.1| (30s ribosomal protein s18 [Nannochloropsis gaditana]) HSP 1 Score: 329.717 bits (844), Expect = 1.063e-110 Identity = 175/185 (94.59%), Postives = 178/185 (96.22%), Query Frame = 0
Query: 54 LAPPRFF-SSNHREGPPDFYWPSNLETTLPDESDRLYPAGGERVFSPEEVRAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGEGVGPDGKKPFLWRKGDAVEEKEKKREELLKQTPSLTI 237
L PP+ + + EGPPDFYWPSNLETTLPDESDRLYPAGGERVFSPEEVRAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGEGVGPDGKKPFLWRKGDAVEEKEKKREELLKQTPSLTI
Sbjct: 133 LLPPQLYPRAAGLEGPPDFYWPSNLETTLPDESDRLYPAGGERVFSPEEVRAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGEGVGPDGKKPFLWRKGDAVEEKEKKREELLKQTPSLTI 317
BLAST of EWM24984.1 vs. NCBI_GenBank
Match: gi|1088205159|gb|OHA63786.1| (30S ribosomal protein S18 [Candidatus Wildermuthbacteria bacterium RIFCSPHIGHO2_01_FULL_47_27] >gi|1088210573|gb|OHA68923.1| 30S ribosomal protein S18 [Candidatus Wildermuthbacteria bacterium RIFCSPHIGHO2_02_FULL_47_17] >gi|1088217502|gb|OHA75498.1| 30S ribosomal protein S18 [Candidatus Wildermuthbacteria bacterium RIFCSPLOWO2_02_FULL_47_10] >gi|1088217531|gb|OHA75526.1| 30S ribosomal protein S18 [Candidatus Wildermuthbacteria bacterium RIFCSPLOWO2_01_FULL_48_35]) HSP 1 Score: 66.2402 bits (160), Expect = 4.898e-11 Identity = 30/59 (50.85%), Postives = 43/59 (72.88%), Query Frame = 0
Query: 127 LCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPH 185
CK GE++F A+L +F+S L I+ RR +G+CAK QRK+A+ IK+ARH+G+LPH
Sbjct: 5 FCKNTS-GEIDFKETALLRRFISGLAKIRARRRTGVCAKHQRKLAQAIKRARHMGLLPH 62
BLAST of EWM24984.1 vs. NCBI_GenBank
Match: gi|517277794|ref|WP_018466612.1| (30S ribosomal protein S18 [Meiothermus timidus]) HSP 1 Score: 66.6254 bits (161), Expect = 7.819e-11 Identity = 33/68 (48.53%), Postives = 48/68 (70.59%), Query Frame = 0
Query: 120 RRGNQPLLCKKIDLGEL-EFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHT 186
RRG +P + + +L ++ NV +L +F+S G I PRR +GL A+ QRK+ARTIK+ARHLG+LP+
Sbjct: 21 RRGRKPKVAAAVGAFDLNDYKNVDILKRFLSETGKILPRRRTGLNAQDQRKLARTIKRARHLGLLPYV 88
BLAST of EWM24984.1 vs. NCBI_GenBank
Match: gi|931381479|gb|KPJ71784.1| (30S ribosomal protein S18 [Parcubacteria bacterium DG_74_3]) HSP 1 Score: 65.855 bits (159), Expect = 7.993e-11 Identity = 28/60 (46.67%), Postives = 47/60 (78.33%), Query Frame = 0
Query: 127 LCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHT 186
C K ++GE+++ + +L +F+S LG I+ R+ +GLC+K QR+++R IK+ARHLG+LP+T
Sbjct: 5 FCVK-NMGEIDYKDSDLLKRFISGLGKIRSRKRTGLCSKHQRELSRAIKRARHLGLLPYT 63
BLAST of EWM24984.1 vs. NCBI_GenBank
Match: gi|1028573822|gb|OAJ42126.1| (ribosomal protein S18 [Batrachochytrium dendrobatidis JEL423]) HSP 1 Score: 67.781 bits (164), Expect = 1.242e-10 Identity = 45/138 (32.61%), Postives = 78/138 (56.52%), Query Frame = 0
Query: 58 RFFSSNHREGPPDFYWPSNLETTLPDESDRLYPA--GGERVFSPEEV---RAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGEL-EFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGV 189
RFFS+N +G + +T D R + G +VF P+E R +N+ + + KL ++ +L KK+ + + E+ NV +L+ F++ +G IKPR +GL + QR+V+R IK+AR +G++P+TY +
Sbjct: 26 RFFSTNRTQGA---HGVHGFQTYGEDARAREFKVDMGQRQVFKPKETYMPRDLNDRNLEMYTK-KLDLPPSEDIL-KKLGIDPIKEYRNVNMLSHFITAIGHIKPRHKTGLTLENQRRVSRAIKRARAMGLMPYTYSI 158
BLAST of EWM24984.1 vs. NCBI_GenBank
Match: gi|654415407|ref|WP_027886793.1| (MULTISPECIES: 30S ribosomal protein S18 [Meiothermus] >gi|756400318|gb|KIQ55084.1| 30S ribosomal protein S18 [Meiothermus ruber] >gi|1019984932|gb|KZK15965.1| 30S ribosomal protein S18 [Meiothermus taiwanensis]) HSP 1 Score: 65.4698 bits (158), Expect = 1.706e-10 Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 0
Query: 120 RRGNQPLLCKKIDLGEL-EFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHT 186
RRG +P + + +L +F NV VL +F+S G I PRR +GL A+ QRK+ARTIK+AR LG+LP T
Sbjct: 19 RRGRKPKVAAAVGAFDLTDFKNVEVLRRFLSETGKILPRRRTGLSAQEQRKLARTIKRARMLGLLPFT 86
BLAST of EWM24984.1 vs. NCBI_GenBank
Match: gi|298712822|emb|CBJ48787.1| (putative 30S ribosomal protein S18 [Ectocarpus siliculosus]) HSP 1 Score: 70.4774 bits (171), Expect = 1.929e-10 Identity = 45/118 (38.14%), Postives = 63/118 (53.39%), Query Frame = 0
Query: 114 CRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGEG-----VGPDGKKPFLWRKGDAVEEKEKKRE 226
C GK Q + P C+ D+ EL ++ +L +FV+ GMI R +GLCAKCQRKVA T+K AR +G++P V Y+ ++ G G G DG + + A E KK E
Sbjct: 278 CPGKKQGKAALPSTCQIFDVKELHVNHTPLLKRFVNDAGMILGRYRTGLCAKCQRKVAHTVKAARQMGLVPT---VSDYE-VRDTGPGGLYAWAGKDGDHDAMAKAKVAAEMARKKSE 391
BLAST of EWM24984.1 vs. NCBI_GenBank
Match: gi|1194657949|ref|WP_085986633.1| (30S ribosomal protein S18 [Meiothermus ruber]) HSP 1 Score: 64.6994 bits (156), Expect = 2.763e-10 Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 0
Query: 120 RRGNQPLLCKKIDLGEL-EFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHT 186
RRG +P + + +L +F NV VL +F+S G I PRR +GL A+ QRK+ARTIK+AR LG+LP T
Sbjct: 2 RRGRKPKVAAAVGAFDLTDFKNVEVLRRFLSETGKILPRRRTGLNAQEQRKLARTIKRARMLGLLPFT 69
BLAST of EWM24984.1 vs. NCBI_GenBank
Match: gi|502779062|ref|WP_013014038.1| (30S ribosomal protein S18 [Meiothermus ruber] >gi|290471117|gb|ADD28536.1| ribosomal protein S18 [Meiothermus ruber DSM 1279] >gi|481062858|gb|AGK06021.1| 30S ribosomal protein S18 [Meiothermus ruber DSM 1279]) HSP 1 Score: 64.6994 bits (156), Expect = 3.247e-10 Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 0
Query: 120 RRGNQPLLCKKIDLGEL-EFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHT 186
RRG +P + + +L +F NV VL +F+S G I PRR +GL A+ QRK+ARTIK+AR LG+LP T
Sbjct: 19 RRGRKPKVAAAVGAFDLTDFKNVEVLRRFLSETGKILPRRRTGLNAQEQRKLARTIKRARMLGLLPFT 86 The following BLAST results are available for this feature:
BLAST of EWM24984.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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