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Properties
| Property Name | Value |
|---|
| Product | 30s ribosomal protein s18 |
| Orig transcript id | gnl|cribi|Naga_100122g3.3570.mrna |
| Orig protein id | gnl|cribi|Naga_100122g3.3570 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:640781..642444 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5710 ID=rna5710|Name=rna5710|organism=Nannochloropsis gaditana|type=mRNA|length=372bp
ATGAAGCGTTACTGTTCAGCCTTTGTATTTGTGCCCTTTTTCCTCGTCGT
CGCGTGTCTACTTTCCGTTGCCATGGCCAATGATGCTGGGGGGGGGCACA
AAAAGCTTGGGGAGGGCTTCACGGATTTCACAGTGCCGAGGAGACCAGCA
GCCACGGTGGGAGAAAGCTTGGGTTTCGTGGCCTTGGTTGTGGGCGTCCT
CGCTCTGGCGGGAGTAACCACTCATTTCAAGCTAAAAAGCAGTCCAAATG
GCTTGCCAGGATACTCACAGGCTAAGACGCGTCGGGTGCGGGCTGTGTAC
AACGAGGTGAAGATCTCTAGGAGTCAAAAGTCACGGGCCGACTCTCTAAT
CGATGAGTGGTGTACAAACTGA back to topprotein sequence of rna5710 >rna5710-protein ID=rna5710-protein|Name=rna5710|organism=Nannochloropsis gaditana|type=polypeptide|length=317bp
MILRNFALLNSRAGTISSRAVICQARNLAAAGRGAGKGGSGRDGEYGGDS
DATATSDAAAAAIKEKDPFGFRELKAKWKNSEIGGHGSPDMREEDAEAIE
TEMEKTGRVTVPRNIFGIKHISKEMTEAWEEGLLPPQLYPRAAGLEGPPD
FYWPSNLETTLPDESDRLYPAGGERVFSPEEVRAMNEAEVGGVCRGKLQR
RGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKV
ARTIKQARHLGVLPHTYGVDLYQRLKMKGEGVGPDGKKPFLWRKGDAVEE
KEKKREELLKQTPSLTI back to topmRNA from alignment at CM002466.1:640781..642444- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5710 ID=rna5710|Name=rna5710|organism=Nannochloropsis gaditana|type=mRNA|length=1664bp|location=Sequence derived from alignment at CM002466.1:640781..642444- (Nannochloropsis gaditana)
CTTGGCCATGGGACGGAAGGAGAAGGTGTGCTGGGAGGCCGTAGGGCGCA
CCGTCCGGGAGAAAGTTCGAAGTCCTTCGTCCTCATCATCTTGTTTGGAG
CGCTTTGTTGGCAGCAGTGTCGCATGCACACTTGCGCTTGCAATGCGGTT
GTGGTACGGAAGGACGCCATTTAACCGGTACTCGCCCTGGTTTGAGGATA
TAGCCATTCGCCTTTCATCACACCATCGCATTCGCATATTTCTCAGAACA
GGTCGTGCCTGTTATGATACTCCGAAATTTTGCGCTATTAAATTCTAGGG
CCGGCACGATTTCGTCCCGAGCCGTAATTTGTCAGGCCCGGAACCTCGCA
GCTGCAGGGCGGGGTGCTGGCAAAGGTGGTTCTGGTAGAGACGGGGAATA
TGGCGGAGACAGCGACGCCACGGCAACATCAGATGCTGCCGCAGCAGCTA
TCAAAGAGAAAGATCCTTTTGGTTTTAGGGAACTGAAAGCTAAGTGGAAG
AACTCGGAAATCGGCGGACATGGGTCCCCTGATATGCGCGAGGAGGATGC
GGAGGCCATCGAGACGGAGATGGAGAAGACTGGTCGCGTCACAGTGCCAA
GAAACATCTTTGGAATCAAGCATATTAGCAAAGAAATGACGGAGGCATGG
GAAGAGGGCCTCCTGCCCCCACAACTCTATCCGCGTGCCGCTGGGTTGTA
AGTATGATCCTTTAAACCAGAACCATCATGTGTCCCGCCCTTCTCGCCTT
AAAGGCTCCTACTGAAGTGATGTGGACTTTTAAATTTTGTTACATCCAAA
CAGCATGTCTCTGGCATCATAACTCGTGGGCGCAACCCTGGCTCTCTTAC
ATTGCTGCTGGTCCCGCTCTCGGTCCACTCACTGTCCTGGCTCCTCCCCG
CTTTTTTTCCTCCAACCACAGAGAGGGTCCTCCAGACTTCTACTGGCCAA
GCAATCTGGAGACGACGCTCCCAGATGAGAGCGATCGCCTGTATCCTGCC
GGCGGAGAACGCGTCTTTTCCCCGGAGGAAGTGAGGGCTATGAATGAGGC
AGAGGTCGGGGGTGTTTGTCGTGGGAAGCTGCAACGGCGGGGAAACCAGC
CATTGCTATGCAAGAAAATCGACCTGGGAGAGCTGGAGTTCAGCAACGTG
GCCGTTCTCGCCCAGTTCGTTTCGCCCCTGGGGATGATCAAGCCGCGGCG
CATGTCAGGATTGTGTGCGAAATGCCAACGAAAGGTGGCGCGCACGATAA
AGCAGGCCCGGCATCTGGGGGTGTTGCCTCACACATACGGTGTGGATTTG
TATCAACGGCTGAAGATGAAGGGAGAGGGGGTGGGGCCCGACGGGAAGAA
ACCCTTTTTGTGGAGGAAGGGGGACGCTGTAGAGGAGAAGGAAAAGAAGA
GGGAAGAGCTCTTGAAGCAGACACCAAGTCTGACCATATAGATCAAGTGT
AGGGAAGTAGTCAAAGAGAGATGTGATGGGTTGGTAGCAGTGGTAAAGTG
GAAATGAACAACAAAGAAAAAGTGTGCGCATGACATCTTGGGATGCTAAT
TCAGGGCTGAAATTATTCGACTGCTATTGCCCGACAGAGTCGCACCGATG
AGTTTGACACTCAGTTTGTACACCACTCATCGATTAGAGAGTCGGCCCGT
GACTTTTGACTCCT back to topCoding sequence (CDS) from alignment at CM002466.1:640781..642444- >rna5710 ID=rna5710|Name=rna5710|organism=Nannochloropsis gaditana|type=CDS|length=1908bp|location=Sequence derived from alignment at CM002466.1:640781..642444- (Nannochloropsis gaditana)
AGAGGGTCCTCCAGACTTCTACTGGCCAAGCAATCTGGAGACGACGCTCC
CAGATGAGAGCGATCGCCTGTATCCTGCCGGCGGAGAACGCGTCTTTTCC
CCGGAGGAAGTGAGGGCTATGAATGAGGCAGAGGTCGGGGGTGTTTGTCG
TGGGAAGCTGCAACGGCGGGGAAACCAGCCATTGCTATGCAAGAAAATCG
ACCTGGGAGAGCTGGAGTTCAGCAACGTGGCCGTTCTCGCCCAGTTCGTT
TCGCCCCTGGGGATGATCAAGCCGCGGCGCATGTCAGGATTGTGTGCGAA
ATGCCAACGAAAGGTGGCGCGCACGATAAAGCAGGCCCGGCATCTGGGGG
TGTTGCCTCACACATACGGTGTGGATTTGTATCAACGGCTGAAGATGAAG
GGAGAGGGGGTGGGGCCCGACGGGAAGAAACCCTTTTTGTGGAGGAAGGG
GGACGCTGTAGAGGAGAAGGAAAAGAAGAGGGAAGAGCTCTTGAAGCAGA
CACCAAGTCTGACCATATAGATGATACTCCGAAATTTTGCGCTATTAAAT
TCTAGGGCCGGCACGATTTCGTCCCGAGCCGTAATTTGTCAGGCCCGGAA
CCTCGCAGCTGCAGGGCGGGGTGCTGGCAAAGGTGGTTCTGGTAGAGACG
GGGAATATGGCGGAGACAGCGACGCCACGGCAACATCAGATGCTGCCGCA
GCAGCTATCAAAGAGAAAGATCCTTTTGGTTTTAGGGAACTGAAAGCTAA
GTGGAAGAACTCGGAAATCGGCGGACATGGGTCCCCTGATATGCGCGAGG
AGGATGCGGAGGCCATCGAGACGGAGATGGAGAAGACTGGTCGCGTCACA
GTGCCAAGAAACATCTTTGGAATCAAGCATATTAGCAAAGAAATGACGGA
GGCATGGGAAGAGGGCCTCCTGCCCCCACAACTCTATCCGCGTGCCGCTG
GGTTAGAGGGTCCTCCAGACTTCTACTGGCCAAGCAATCTGGAGACGACG
CTCCCAGATGAGAGCGATCGCCTGTATCCTGCCGGCGGAGAACGCGTCTT
TTCCCCGGAGGAAGTGAGGGCTATGAATGAGGCAGAGGTCGGGGGTGTTT
GTCGTGGGAAGCTGCAACGGCGGGGAAACCAGCCATTGCTATGCAAGAAA
ATCGACCTGGGAGAGCTGGAGTTCAGCAACGTGGCCGTTCTCGCCCAGTT
CGTTTCGCCCCTGGGGATGATCAAGCCGCGGCGCATGTCAGGATTGTGTG
CGAAATGCCAACGAAAGGTGGCGCGCACGATAAAGCAGGCCCGGCATCTG
GGGGTGTTGCCTCACACATACGGTGTGGATTTGTATCAACGGCTGAAGAT
GAAGGGAGAGGGGGTGGGGCCCGACGGGAAGAAACCCTTTTTGTGGAGGA
AGGGGGACGCTGTAGAGGAGAAGGAAAAGAAGAGGGAAGAGCTCTTGAAG
CAGACACCAAGTCTGACCATATAGATGATACTCCGAAATTTTGCGCTATT
AAATTCTAGGGCCGGCACGATTTCGTCCCGAGCCGTAATTTGTCAGGCCC
GGAACCTCGCAGCTGCAGGGCGGGGTGCTGGCAAAGGTGGTTCTGGTAGA
GACGGGGAATATGGCGGAGACAGCGACGCCACGGCAACATCAGATGCTGC
CGCAGCAGCTATCAAAGAGAAAGATCCTTTTGGTTTTAGGGAACTGAAAG
CTAAGTGGAAGAACTCGGAAATCGGCGGACATGGGTCCCCTGATATGCGC
GAGGAGGATGCGGAGGCCATCGAGACGGAGATGGAGAAGACTGGTCGCGT
CACAGTGCCAAGAAACATCTTTGGAATCAAGCATATTAGCAAAGAAATGA
CGGAGGCATGGGAAGAGGGCCTCCTGCCCCCACAACTCTATCCGCGTGCC
GCTGGGTT back to top
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