EWM24983.1, cds5695 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24983.1 vs. NCBI_GenBank
Match: gi|585106616|gb|EWM24983.1| (30s ribosomal protein s18 [Nannochloropsis gaditana]) HSP 1 Score: 649.047 bits (1673), Expect = 0.000e+0 Identity = 317/317 (100.00%), Postives = 317/317 (100.00%), Query Frame = 0 Query: 1 MILRNFALLNSRAGTISSRAVICQARNLAAAGRGAGKGGSGRDGEYGGDSDATATSDAAAAAIKEKDPFGFRELKAKWKNSEIGGHGSPDMREEDAEAIETEMEKTGRVTVPRNIFGIKHISKEMTEAWEEGLLPPQLYPRAAGLEGPPDFYWPSNLETTLPDESDRLYPAGGERVFSPEEVRAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGEGVGPDGKKPFLWRKGDAVEEKEKKREELLKQTPSLTI 317 MILRNFALLNSRAGTISSRAVICQARNLAAAGRGAGKGGSGRDGEYGGDSDATATSDAAAAAIKEKDPFGFRELKAKWKNSEIGGHGSPDMREEDAEAIETEMEKTGRVTVPRNIFGIKHISKEMTEAWEEGLLPPQLYPRAAGLEGPPDFYWPSNLETTLPDESDRLYPAGGERVFSPEEVRAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGEGVGPDGKKPFLWRKGDAVEEKEKKREELLKQTPSLTI Sbjct: 1 MILRNFALLNSRAGTISSRAVICQARNLAAAGRGAGKGGSGRDGEYGGDSDATATSDAAAAAIKEKDPFGFRELKAKWKNSEIGGHGSPDMREEDAEAIETEMEKTGRVTVPRNIFGIKHISKEMTEAWEEGLLPPQLYPRAAGLEGPPDFYWPSNLETTLPDESDRLYPAGGERVFSPEEVRAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGEGVGPDGKKPFLWRKGDAVEEKEKKREELLKQTPSLTI 317
BLAST of EWM24983.1 vs. NCBI_GenBank
Match: gi|585106617|gb|EWM24984.1| (30s ribosomal protein s18 [Nannochloropsis gaditana]) HSP 1 Score: 333.569 bits (854), Expect = 4.547e-112 Identity = 175/185 (94.59%), Postives = 178/185 (96.22%), Query Frame = 0 Query: 133 LLPPQLYPRAAGLEGPPDFYWPSNLETTLPDESDRLYPAGGERVFSPEEVRAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGEGVGPDGKKPFLWRKGDAVEEKEKKREELLKQTPSLTI 317 L PP+ + + EGPPDFYWPSNLETTLPDESDRLYPAGGERVFSPEEVRAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGEGVGPDGKKPFLWRKGDAVEEKEKKREELLKQTPSLTI Sbjct: 54 LAPPRFF-SSNHREGPPDFYWPSNLETTLPDESDRLYPAGGERVFSPEEVRAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGEGVGPDGKKPFLWRKGDAVEEKEKKREELLKQTPSLTI 237
BLAST of EWM24983.1 vs. NCBI_GenBank
Match: gi|298712822|emb|CBJ48787.1| (putative 30S ribosomal protein S18 [Ectocarpus siliculosus]) HSP 1 Score: 71.633 bits (174), Expect = 2.091e-10 Identity = 33/71 (46.48%), Postives = 46/71 (64.79%), Query Frame = 0 Query: 194 CRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLP 264 C GK Q + P C+ D+ EL ++ +L +FV+ GMI R +GLCAKCQRKVA T+K AR +G++P Sbjct: 278 CPGKKQGKAALPSTCQIFDVKELHVNHTPLLKRFVNDAGMILGRYRTGLCAKCQRKVAHTVKAARQMGLVP 348
BLAST of EWM24983.1 vs. NCBI_GenBank
Match: gi|1088205159|gb|OHA63786.1| (30S ribosomal protein S18 [Candidatus Wildermuthbacteria bacterium RIFCSPHIGHO2_01_FULL_47_27] >gi|1088210573|gb|OHA68923.1| 30S ribosomal protein S18 [Candidatus Wildermuthbacteria bacterium RIFCSPHIGHO2_02_FULL_47_17] >gi|1088217502|gb|OHA75498.1| 30S ribosomal protein S18 [Candidatus Wildermuthbacteria bacterium RIFCSPLOWO2_02_FULL_47_10] >gi|1088217531|gb|OHA75526.1| 30S ribosomal protein S18 [Candidatus Wildermuthbacteria bacterium RIFCSPLOWO2_01_FULL_48_35]) HSP 1 Score: 65.4698 bits (158), Expect = 2.735e-10 Identity = 30/59 (50.85%), Postives = 43/59 (72.88%), Query Frame = 0 Query: 207 LCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPH 265 CK GE++F A+L +F+S L I+ RR +G+CAK QRK+A+ IK+ARH+G+LPH Sbjct: 5 FCKNTS-GEIDFKETALLRRFISGLAKIRARRRTGVCAKHQRKLAQAIKRARHMGLLPH 62
BLAST of EWM24983.1 vs. NCBI_GenBank
Match: gi|517277794|ref|WP_018466612.1| (30S ribosomal protein S18 [Meiothermus timidus]) HSP 1 Score: 66.2402 bits (160), Expect = 2.766e-10 Identity = 33/68 (48.53%), Postives = 48/68 (70.59%), Query Frame = 0 Query: 200 RRGNQPLLCKKIDLGEL-EFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHT 266 RRG +P + + +L ++ NV +L +F+S G I PRR +GL A+ QRK+ARTIK+ARHLG+LP+ Sbjct: 21 RRGRKPKVAAAVGAFDLNDYKNVDILKRFLSETGKILPRRRTGLNAQDQRKLARTIKRARHLGLLPYV 88
BLAST of EWM24983.1 vs. NCBI_GenBank
Match: gi|931381479|gb|KPJ71784.1| (30S ribosomal protein S18 [Parcubacteria bacterium DG_74_3]) HSP 1 Score: 64.3142 bits (155), Expect = 5.751e-10 Identity = 26/55 (47.27%), Postives = 45/55 (81.82%), Query Frame = 0 Query: 212 DLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHT 266 ++GE+++ + +L +F+S LG I+ R+ +GLC+K QR+++R IK+ARHLG+LP+T Sbjct: 9 NMGEIDYKDSDLLKRFISGLGKIRSRKRTGLCSKHQRELSRAIKRARHLGLLPYT 63
BLAST of EWM24983.1 vs. NCBI_GenBank
Match: gi|654415407|ref|WP_027886793.1| (MULTISPECIES: 30S ribosomal protein S18 [Meiothermus] >gi|756400318|gb|KIQ55084.1| 30S ribosomal protein S18 [Meiothermus ruber] >gi|1019984932|gb|KZK15965.1| 30S ribosomal protein S18 [Meiothermus taiwanensis]) HSP 1 Score: 65.0846 bits (157), Expect = 6.814e-10 Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 0 Query: 200 RRGNQPLLCKKIDLGEL-EFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHT 266 RRG +P + + +L +F NV VL +F+S G I PRR +GL A+ QRK+ARTIK+AR LG+LP T Sbjct: 19 RRGRKPKVAAAVGAFDLTDFKNVEVLRRFLSETGKILPRRRTGLSAQEQRKLARTIKRARMLGLLPFT 86
BLAST of EWM24983.1 vs. NCBI_GenBank
Match: gi|502779062|ref|WP_013014038.1| (30S ribosomal protein S18 [Meiothermus ruber] >gi|290471117|gb|ADD28536.1| ribosomal protein S18 [Meiothermus ruber DSM 1279] >gi|481062858|gb|AGK06021.1| 30S ribosomal protein S18 [Meiothermus ruber DSM 1279]) HSP 1 Score: 64.3142 bits (155), Expect = 1.182e-9 Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 0 Query: 200 RRGNQPLLCKKIDLGEL-EFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHT 266 RRG +P + + +L +F NV VL +F+S G I PRR +GL A+ QRK+ARTIK+AR LG+LP T Sbjct: 19 RRGRKPKVAAAVGAFDLTDFKNVEVLRRFLSETGKILPRRRTGLNAQEQRKLARTIKRARMLGLLPFT 86
BLAST of EWM24983.1 vs. NCBI_GenBank
Match: gi|1084198249|gb|OGL90237.1| (30S ribosomal protein S18 [Candidatus Uhrbacteria bacterium RIFCSPLOWO2_02_FULL_53_10]) HSP 1 Score: 63.929 bits (154), Expect = 1.250e-9 Identity = 32/69 (46.38%), Postives = 44/69 (63.77%), Query Frame = 0 Query: 198 LQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHT 266 ++ R LLC K + +L+F L QF++P I PRR +G CA QR++ARTIKQAR +G+LP T Sbjct: 3 IKSRTKSCLLCVK-SIEQLDFKETGFLRQFITPQAKIAPRRRTGTCALHQRRLARTIKQARIMGLLPFT 70
BLAST of EWM24983.1 vs. NCBI_GenBank
Match: gi|888641519|dbj|GAO75497.1| (30S ribosomal protein S18 [Meiothermus ruber H328]) HSP 1 Score: 64.3142 bits (155), Expect = 1.276e-9 Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 0 Query: 200 RRGNQPLLCKKIDLGEL-EFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHT 266 RRG +P + + +L +F NV VL +F+S G I PRR +GL A+ QRK+ARTIK+AR LG+LP T Sbjct: 24 RRGRKPKVAAAVGAFDLTDFKNVEVLRRFLSETGKILPRRRTGLNAQEQRKLARTIKRARMLGLLPFT 91 The following BLAST results are available for this feature:
BLAST of EWM24983.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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