EWM24983.1, cds5695 (CDS) Nannochloropsis gaditana

Overview
NameEWM24983.1
Unique Namecds5695
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:641748..642181 -
Alignment locationCM002466.1:641004..641523 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM24983.1
Product30s ribosomal protein s18
Orig transcript idgnl|cribi|Naga_100122g3.3570.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:641748..642181 -
CM002466.1supercontigCM002466.1:641004..641523 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005198structural molecule activity
GO:0003735structural constituent of ribosome
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: INTERPRO
TermDefinition
IPR001648Ribosomal_S18
Homology
BLAST of EWM24983.1 vs. NCBI_GenBank
Match: gi|585106616|gb|EWM24983.1| (30s ribosomal protein s18 [Nannochloropsis gaditana])

HSP 1 Score: 649.047 bits (1673), Expect = 0.000e+0
Identity = 317/317 (100.00%), Postives = 317/317 (100.00%), Query Frame = 0
Query:    1 MILRNFALLNSRAGTISSRAVICQARNLAAAGRGAGKGGSGRDGEYGGDSDATATSDAAAAAIKEKDPFGFRELKAKWKNSEIGGHGSPDMREEDAEAIETEMEKTGRVTVPRNIFGIKHISKEMTEAWEEGLLPPQLYPRAAGLEGPPDFYWPSNLETTLPDESDRLYPAGGERVFSPEEVRAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGEGVGPDGKKPFLWRKGDAVEEKEKKREELLKQTPSLTI 317
            MILRNFALLNSRAGTISSRAVICQARNLAAAGRGAGKGGSGRDGEYGGDSDATATSDAAAAAIKEKDPFGFRELKAKWKNSEIGGHGSPDMREEDAEAIETEMEKTGRVTVPRNIFGIKHISKEMTEAWEEGLLPPQLYPRAAGLEGPPDFYWPSNLETTLPDESDRLYPAGGERVFSPEEVRAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGEGVGPDGKKPFLWRKGDAVEEKEKKREELLKQTPSLTI
Sbjct:    1 MILRNFALLNSRAGTISSRAVICQARNLAAAGRGAGKGGSGRDGEYGGDSDATATSDAAAAAIKEKDPFGFRELKAKWKNSEIGGHGSPDMREEDAEAIETEMEKTGRVTVPRNIFGIKHISKEMTEAWEEGLLPPQLYPRAAGLEGPPDFYWPSNLETTLPDESDRLYPAGGERVFSPEEVRAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGEGVGPDGKKPFLWRKGDAVEEKEKKREELLKQTPSLTI 317          
BLAST of EWM24983.1 vs. NCBI_GenBank
Match: gi|585106617|gb|EWM24984.1| (30s ribosomal protein s18 [Nannochloropsis gaditana])

HSP 1 Score: 333.569 bits (854), Expect = 4.547e-112
Identity = 175/185 (94.59%), Postives = 178/185 (96.22%), Query Frame = 0
Query:  133 LLPPQLYPRAAGLEGPPDFYWPSNLETTLPDESDRLYPAGGERVFSPEEVRAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGEGVGPDGKKPFLWRKGDAVEEKEKKREELLKQTPSLTI 317
            L PP+ +  +   EGPPDFYWPSNLETTLPDESDRLYPAGGERVFSPEEVRAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGEGVGPDGKKPFLWRKGDAVEEKEKKREELLKQTPSLTI
Sbjct:   54 LAPPRFF-SSNHREGPPDFYWPSNLETTLPDESDRLYPAGGERVFSPEEVRAMNEAEVGGVCRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHTYGVDLYQRLKMKGEGVGPDGKKPFLWRKGDAVEEKEKKREELLKQTPSLTI 237          
BLAST of EWM24983.1 vs. NCBI_GenBank
Match: gi|298712822|emb|CBJ48787.1| (putative 30S ribosomal protein S18 [Ectocarpus siliculosus])

HSP 1 Score: 71.633 bits (174), Expect = 2.091e-10
Identity = 33/71 (46.48%), Postives = 46/71 (64.79%), Query Frame = 0
Query:  194 CRGKLQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLP 264
            C GK Q +   P  C+  D+ EL  ++  +L +FV+  GMI  R  +GLCAKCQRKVA T+K AR +G++P
Sbjct:  278 CPGKKQGKAALPSTCQIFDVKELHVNHTPLLKRFVNDAGMILGRYRTGLCAKCQRKVAHTVKAARQMGLVP 348          
BLAST of EWM24983.1 vs. NCBI_GenBank
Match: gi|1088205159|gb|OHA63786.1| (30S ribosomal protein S18 [Candidatus Wildermuthbacteria bacterium RIFCSPHIGHO2_01_FULL_47_27] >gi|1088210573|gb|OHA68923.1| 30S ribosomal protein S18 [Candidatus Wildermuthbacteria bacterium RIFCSPHIGHO2_02_FULL_47_17] >gi|1088217502|gb|OHA75498.1| 30S ribosomal protein S18 [Candidatus Wildermuthbacteria bacterium RIFCSPLOWO2_02_FULL_47_10] >gi|1088217531|gb|OHA75526.1| 30S ribosomal protein S18 [Candidatus Wildermuthbacteria bacterium RIFCSPLOWO2_01_FULL_48_35])

HSP 1 Score: 65.4698 bits (158), Expect = 2.735e-10
Identity = 30/59 (50.85%), Postives = 43/59 (72.88%), Query Frame = 0
Query:  207 LCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPH 265
             CK    GE++F   A+L +F+S L  I+ RR +G+CAK QRK+A+ IK+ARH+G+LPH
Sbjct:    5 FCKNTS-GEIDFKETALLRRFISGLAKIRARRRTGVCAKHQRKLAQAIKRARHMGLLPH 62          
BLAST of EWM24983.1 vs. NCBI_GenBank
Match: gi|517277794|ref|WP_018466612.1| (30S ribosomal protein S18 [Meiothermus timidus])

HSP 1 Score: 66.2402 bits (160), Expect = 2.766e-10
Identity = 33/68 (48.53%), Postives = 48/68 (70.59%), Query Frame = 0
Query:  200 RRGNQPLLCKKIDLGEL-EFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHT 266
            RRG +P +   +   +L ++ NV +L +F+S  G I PRR +GL A+ QRK+ARTIK+ARHLG+LP+ 
Sbjct:   21 RRGRKPKVAAAVGAFDLNDYKNVDILKRFLSETGKILPRRRTGLNAQDQRKLARTIKRARHLGLLPYV 88          
BLAST of EWM24983.1 vs. NCBI_GenBank
Match: gi|931381479|gb|KPJ71784.1| (30S ribosomal protein S18 [Parcubacteria bacterium DG_74_3])

HSP 1 Score: 64.3142 bits (155), Expect = 5.751e-10
Identity = 26/55 (47.27%), Postives = 45/55 (81.82%), Query Frame = 0
Query:  212 DLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHT 266
            ++GE+++ +  +L +F+S LG I+ R+ +GLC+K QR+++R IK+ARHLG+LP+T
Sbjct:    9 NMGEIDYKDSDLLKRFISGLGKIRSRKRTGLCSKHQRELSRAIKRARHLGLLPYT 63          
BLAST of EWM24983.1 vs. NCBI_GenBank
Match: gi|654415407|ref|WP_027886793.1| (MULTISPECIES: 30S ribosomal protein S18 [Meiothermus] >gi|756400318|gb|KIQ55084.1| 30S ribosomal protein S18 [Meiothermus ruber] >gi|1019984932|gb|KZK15965.1| 30S ribosomal protein S18 [Meiothermus taiwanensis])

HSP 1 Score: 65.0846 bits (157), Expect = 6.814e-10
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 0
Query:  200 RRGNQPLLCKKIDLGEL-EFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHT 266
            RRG +P +   +   +L +F NV VL +F+S  G I PRR +GL A+ QRK+ARTIK+AR LG+LP T
Sbjct:   19 RRGRKPKVAAAVGAFDLTDFKNVEVLRRFLSETGKILPRRRTGLSAQEQRKLARTIKRARMLGLLPFT 86          
BLAST of EWM24983.1 vs. NCBI_GenBank
Match: gi|502779062|ref|WP_013014038.1| (30S ribosomal protein S18 [Meiothermus ruber] >gi|290471117|gb|ADD28536.1| ribosomal protein S18 [Meiothermus ruber DSM 1279] >gi|481062858|gb|AGK06021.1| 30S ribosomal protein S18 [Meiothermus ruber DSM 1279])

HSP 1 Score: 64.3142 bits (155), Expect = 1.182e-9
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 0
Query:  200 RRGNQPLLCKKIDLGEL-EFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHT 266
            RRG +P +   +   +L +F NV VL +F+S  G I PRR +GL A+ QRK+ARTIK+AR LG+LP T
Sbjct:   19 RRGRKPKVAAAVGAFDLTDFKNVEVLRRFLSETGKILPRRRTGLNAQEQRKLARTIKRARMLGLLPFT 86          
BLAST of EWM24983.1 vs. NCBI_GenBank
Match: gi|1084198249|gb|OGL90237.1| (30S ribosomal protein S18 [Candidatus Uhrbacteria bacterium RIFCSPLOWO2_02_FULL_53_10])

HSP 1 Score: 63.929 bits (154), Expect = 1.250e-9
Identity = 32/69 (46.38%), Postives = 44/69 (63.77%), Query Frame = 0
Query:  198 LQRRGNQPLLCKKIDLGELEFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHT 266
            ++ R    LLC K  + +L+F     L QF++P   I PRR +G CA  QR++ARTIKQAR +G+LP T
Sbjct:    3 IKSRTKSCLLCVK-SIEQLDFKETGFLRQFITPQAKIAPRRRTGTCALHQRRLARTIKQARIMGLLPFT 70          
BLAST of EWM24983.1 vs. NCBI_GenBank
Match: gi|888641519|dbj|GAO75497.1| (30S ribosomal protein S18 [Meiothermus ruber H328])

HSP 1 Score: 64.3142 bits (155), Expect = 1.276e-9
Identity = 35/68 (51.47%), Postives = 47/68 (69.12%), Query Frame = 0
Query:  200 RRGNQPLLCKKIDLGEL-EFSNVAVLAQFVSPLGMIKPRRMSGLCAKCQRKVARTIKQARHLGVLPHT 266
            RRG +P +   +   +L +F NV VL +F+S  G I PRR +GL A+ QRK+ARTIK+AR LG+LP T
Sbjct:   24 RRGRKPKVAAAVGAFDLTDFKNVEVLRRFLSETGKILPRRRTGLNAQEQRKLARTIKRARMLGLLPFT 91          
The following BLAST results are available for this feature:
BLAST of EWM24983.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106616|gb|EWM24983.1|0.000e+0100.0030s ribosomal protein s18 [Nannochloropsis gaditan... [more]
gi|585106617|gb|EWM24984.1|4.547e-11294.5930s ribosomal protein s18 [Nannochloropsis gaditan... [more]
gi|298712822|emb|CBJ48787.1|2.091e-1046.48putative 30S ribosomal protein S18 [Ectocarpus sil... [more]
gi|1088205159|gb|OHA63786.1|2.735e-1050.8530S ribosomal protein S18 [Candidatus Wildermuthba... [more]
gi|517277794|ref|WP_018466612.1|2.766e-1048.5330S ribosomal protein S18 [Meiothermus timidus][more]
gi|931381479|gb|KPJ71784.1|5.751e-1047.2730S ribosomal protein S18 [Parcubacteria bacterium... [more]
gi|654415407|ref|WP_027886793.1|6.814e-1051.47MULTISPECIES: 30S ribosomal protein S18 [Meiotherm... [more]
gi|502779062|ref|WP_013014038.1|1.182e-951.4730S ribosomal protein S18 [Meiothermus ruber] >gi|... [more]
gi|1084198249|gb|OGL90237.1|1.250e-946.3830S ribosomal protein S18 [Candidatus Uhrbacteria ... [more]
gi|888641519|dbj|GAO75497.1|1.276e-951.4730S ribosomal protein S18 [Meiothermus ruber H328][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5710rna5710Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications