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Properties
| Property Name | Value |
|---|
| Product | assembly protein |
| Orig transcript id | gnl|cribi|Naga_100258g3.3328.mrna |
| Orig protein id | gnl|cribi|Naga_100258g3.3328 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002455.1 | supercontig | CM002455.1:1418086..1420276 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna571 ID=rna571|Name=rna571|organism=Nannochloropsis gaditana|type=mRNA|length=2611bp
CCTGACATTGTGGTGGGACCGTGAAAATTCATTCGACATGGCCCTTGGTC
TTGGGGTCAGCTCGTTGAGTAAAAGATACTTTCTGAGAGCTTTCGATGAC
CTTGAATACGAAGGATCAGGGTTGAAAAGCATTTTCGTGTGCAACGCTCT
CGCTCGAGGGCCTTACACGGTCGGGTCACTATTGGCTGGGCCACATGAGG
AAGATTAATATCAAGTTATTGTTTAAAAGAAAAGCTTTACCCGTTTTATG
GGCTGAAAACTTTTTAAGCACTCCGGAGGCACTGGACCCACCAGATCATT
TTCACTTCAATTCTACTACTTCAGTGAGAGCCGAAGTTGGCCTCGGATGC
TTAGTTATGCGGGCGCTTTGTGAAATTGTAAAGACGTATCGAACAAAAGG
CACGTCTTTCTTAATGGAGAGAGGACAACTACAGCCTTTCTTTGGCATCC
GTTGTTACATGAACGGCAGTTGCAGTTGCCTATACAGGGTACCCTTCCAT
GAGGTTTCCTTCTTTATTCTTCTCGGTGTAATCGTCCCGTGTGAGATGTA
TTTTGTGGTGTGAAAGCAAAGACTTCAGAGAATGGCTCCATTGAAGAAGT
ATATGCAGCCTGCAGTGGTGCTTGCTGCAGCCACGGCCGGCATGACGTCG
GCCTTCCTGCTCCCCGCCATGCGCCCTGTCCCTGCCCCCACGACCGTCAC
CTGCGCAGCAAGGACGTCGCCGCTCTTCTCCCGCTCTTCCACGCCCTCTG
TCACGCCTGCCAGGCCCACCAAAGGCACGATTCTGTCGGCCACCAATTTT
TTCGAATCATTTTTCGCGCCCAAATCCGCCTCTGGGGCCGGTGCCCGTGG
GGGAAAGAAAACCATCGTCCTCACTGGCACTTCTTCGGGCCTGGGCAAGG
CGACGCTCAAAGCGCTCTGTGCCCGCGGTGACAATTTCGTGATTTGCGGC
GTCAGGGACATGGAGAAAATGCAGGCCGTGGCGGAGGAACTGGGCTTGGA
CCCGTCTTCCTACACGATCCGTCCCTTGGACCTCTCATCCTTCGCCTCGG
TGAGGCGCTTCGCCAAGGAAGTGAAGGCGGTGAAGGGCGGTAAGCCCTTG
GATGCCCTGGTCTGTAACGCGGCCGTGTACCTGCCTGCCCGTGACTACCC
GACGTTCACCCCGGATGGGATCGAAGAGTCCCTCCAAATCAATCACCTCT
CCCACTTCCTCCTGGTTTCGCTCCTGCTCGACGACTTGAAGAAGGCGAAG
GACCCCCGCTGTGTGATCGTGGGCTCCATCACCGGGAACGACAACACCAT
CGCGGGGGCCTTCGTCTGGCCGCGAGCCTCCTTAGGGGACTTGAAAGGGA
TGCAGGAGGGGGCGAAGGAGCCTGTCTCGATGATCGACGGCAAGAATTTC
AACGGGGCGAAAGCCTACAAGGACAGCAAGATGTGCAACATGATGACCGT
GAACGAGCTTCACAAGCGGTACCATGACGCCACGGGCATCACCTTCTCCT
CCATGTACCCCGGGTGCATCGCCGAAACGGCCTTGTTTCGGGAAAAGCGA
CAGTGGTTCCGGACGCTCTTCCCCCTCTTCATGAAGTACGTCACGGGGGG
CTACGTGTCCGAAAACGAAGCCGGCGAGCGTCTGGCCCAAACCGTGTGGG
ACCCGGCGTTGAAGACGAGCGGGCAGTACTGGTGCTGGAACGGTCAGGCC
CAACAGTTTGGCTACTACGACCCTGCCACCAAACAAGTTCGAGGCGCGGG
CGGGAGCGGCGGAACCGTGTTCCCTGGGAAGTTGGCGGGGCAAGTGATGG
ATCAGGCCAAGGCAGAGAAAATGTGGGAGTTGAGCTCGGAGATTACGGGG
GCGACGTGGCCGAGCGTAGGGGTCCGGGAATTGGCGAACGTGTGAGGGAA
TGGAAGGAATATTGGGGAAGGGAAAGCGATGGAAGGGATGGAAGGGATGG
AAGGAAGGGTGTGGATAGATCGGACGTAGGGAGAAGAGGAAGGCCGCGTG
GGAAAGGCGGGTGGAGGGAGAGGCATGGGGAGGAAGGACGGAGGAAATGA
GGAGGTCGGCATTCGGACGAGAAGTAAGCGGTGGGGGGAGTGGGGAGAAT
GCGGGGAGGTAGGGGAGGGAGGATGCGACAGGAGGAAGATGGGACCTGCG
GGGTAGGGGAGGGACGGAAGAGCCGCAGGCAGGAAGGCAAGCGGGGGTCA
GGAGGAGAAAGAAGGGAAGGACGCCGGGGGGTAGAGGCGGGACTCGGGCG
TCAAATGGGCGGAGGAGGCTCTGCTTGAGCACAGGAAATGAAATATACAC
GGGGTGCAGCATATCCTGGCATGCCCGGGCAGGCGGTCGGGCAGGCCATG
GGCGGATCGGATCGAGTCCGTCCCCACCCTGGCTCCTGCCTCCTCTTCTC
CTTTTGTCAGCGGACGTCGTGTTTCTTTCACGCGGGTCCACAAGTCGAGT
TTCCCTCCACCGCCTGTTCCCTCCCCCCCTTTCACACGTCCCTCTCACCT
CCCCCTAAACGCGTCAGCGGCCCCCGACTTCCTCACCTTTTCCAACGCTT
TCACAAGCTCGTGTGCAGTCATTTAAAAGTCAAAGTTATCATTGTGGCCC
TGTTTCTGTCT back to topprotein sequence of rna571 >rna571-protein ID=rna571-protein|Name=rna571|organism=Nannochloropsis gaditana|type=polypeptide|length=573bp
MTPRQQYTGSRRRGATTGFIMAATAVAAVGVAQAFLAPFNPPAQGGIGVQ
KASNIMHQQHQQKHSIRNTRLAATLADRPRSTSFEESSKEIEAETVALKP
PSREEQAKDWFNAVLADRDPHPAFGRATEEGVERFLAGETRAPTRREEAW
RFTDLSRLYGRRPSKPPAVLQPAQVTALKAKIEEHTLEVCEGRVVVFVDG
VHRPELSHVARLKEEGPKEGWRAGSIFEFSKEEQEELFREVEWAPEVGLR
HTLASGSLPFSCLNQACVKDAACLVVDERGEMSAPVQFIFVSTSSQGEGG
AEGEKDVRVSHPRLAVVARKRSAGKFVQSYIDIGSGTALANACTTVRVDR
RAEVQHLHANELGPRGLMFDAVSVTTKKLSAYKNVFVNVGGELGRVNFQA
TLNGTEGRVDTEGVTITGEEQELDIHSYIHHRRKGGESNMYQCNIVSGDS
HCVFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCT
HGATVADIDENEAFYLQSRGISRREARQVLMMGFAAQVYNQIPCEKMKKR
LGERLYDVCPDVGIAKKYEYLSV back to topmRNA from alignment at CM002455.1:1418086..1420276- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna571 ID=rna571|Name=rna571|organism=Nannochloropsis gaditana|type=mRNA|length=2191bp|location=Sequence derived from alignment at CM002455.1:1418086..1420276- (Nannochloropsis gaditana)
CCTTCTCAATCTAGTGCTGCATCGAGATGACTCCGAGGCAGCAATACACG
GGGTCGCGGCGACGCGGGGCCACTACGGGCTTCATAATGGCGGCAACTGC
AGTAGCAGCAGTAGGAGTCGCACAAGCCTTTCTAGCCCCCTTCAACCCGC
CTGCGCAAGGGGGAATTGGAGTACAAAAAGCAAGCAATATAATGCATCAA
CAGCATCAACAAAAGCATAGCATAAGGGTAAGGAATAACGTACAGGAGAA
GAGGAAAAGGGTAGTGCACGTGTTGATTTGGTTGGCTGGACAACAAGCTT
CACGAGAAAGTGAGGTTAGGGTTCATCAAGCTAGCATGCATGATGAGTTT
GAACCTTATGTCCTTGCACTCCTGGTCTGGAGTGCGTCCCAGGCTATCGC
AAATGTAGACTCGTTGATGTGTGTGGAGTGCTCACTGCTGGGATGCCGCA
CCCACCAATTTGTGCTTTGTCATGTCCCTACCTCCTCGTGTCCTCCTTAC
ATTCGGTACAACGCATTTATGCGACACTATATTGGGTTTAATCGTCCCTA
TGGACACATATCCAGGCCTCGTACGGCTGTATCACTCGTTGTGAAGATTT
TATGATGACGTCTCTCATCTCCTCCGCCGCGCTCTCTCTTACCGTCCTCA
TCACATCAGAACACCCGTCTCGCGGCCACCCTCGCTGACCGTCCCCGGTC
CACATCTTTCGAGGAGTCAAGCAAAGAAATTGAAGCGGAAACCGTCGCGC
TCAAGCCTCCATCGCGCGAAGAACAAGCTAAGGATTGGTTCAACGCTGTT
TTGGCAGACCGCGACCCCCACCCTGCCTTTGGGCGGGCCACGGAGGAAGG
GGTGGAGCGCTTTCTGGCAGGGGAAACGAGGGCACCGACCCGGCGAGAAG
AGGCATGGCGGTTCACGGATCTAAGCCGTCTGTATGGGCGACGGCCATCG
AAGCCTCCCGCGGTCCTACAGCCGGCCCAGGTGACCGCATTGAAGGCGAA
GATCGAGGAACACACCTTGGAGGTGTGCGAAGGACGGGTCGTGGTCTTCG
TGGACGGCGTCCACCGACCCGAGTTGTCCCACGTGGCGAGGTTAAAGGAG
GAAGGGCCGAAGGAGGGGTGGAGAGCGGGCAGCATATTTGAGTTCTCGAA
GGAGGAGCAGGAGGAGTTGTTCCGGGAGGTCGAGTGGGCGCCGGAGGTCG
GGCTCCGGCACACGTTGGCGTCCGGTTCCTTGCCCTTTTCGTGCTTGAAC
CAGGCCTGTGTGAAAGACGCGGCCTGCCTGGTGGTGGACGAACGGGGAGA
GATGTCGGCGCCCGTGCAATTTATCTTCGTCTCCACCTCCAGCCAAGGGG
AAGGCGGGGCGGAGGGGGAGAAAGACGTGCGAGTTTCCCACCCGCGCTTG
GCGGTGGTGGCGCGAAAACGCTCGGCAGGAAAATTTGTCCAGTCCTACAT
CGACATAGGCTCGGGAACAGCCTTGGCGAATGCCTGCACCACGGTGCGTG
TGGACCGACGGGCGGAAGTGCAGCACTTGCACGCCAACGAGCTGGGCCCG
AGGGGCCTCATGTTTGACGCGGTCTCTGTCACGACCAAGAAATTGAGCGC
CTACAAGAACGTGTTCGTGAACGTGGGGGGGGAGTTGGGCCGGGTCAATT
TCCAAGCGACCTTGAACGGGACGGAGGGACGGGTGGACACGGAGGGGGTG
ACCATCACTGGGGAGGAACAAGAACTCGATATCCACTCCTACATCCACCA
TCGCCGGAAAGGCGGGGAGAGTAACATGTACCAGTGCAACATTGTGAGTG
GGGACAGCCACTGCGTGTTCAAGGGACGGATGAAATTGGAGCCACGAGCA
CGGGGGGTGACGGCGGACCAGCTGATTCGCTCCATCATGCTCACGGACTC
CTGCACCGTGGACGCCATGCCCACCTTGGAGGTGTGTTCGGGGGATGTGG
ACTGCACGCACGGGGCCACGGTGGCGGATATCGACGAGAACGAAGCTTTC
TACCTTCAGTCCAGAGGCATATCACGCCGGGAGGCACGCCAGGTGTTGAT
GATGGGCTTCGCTGCTCAGGTATACAACCAGATCCCGTGCGAAAAAATGA
AGAAGAGGCTGGGTGAACGGCTCTATGACGTGTGCCCAGATGTAGGCATA
GCCAAGAAGTACGAGTACTTGAGTGTGTAGGCAGGGAGGGA back to topCoding sequence (CDS) from alignment at CM002455.1:1418086..1420276- >rna571 ID=rna571|Name=rna571|organism=Nannochloropsis gaditana|type=CDS|length=3444bp|location=Sequence derived from alignment at CM002455.1:1418086..1420276- (Nannochloropsis gaditana)
AACACCCGTCTCGCGGCCACCCTCGCTGACCGTCCCCGGTCCACATCTTT
CGAGGAGTCAAGCAAAGAAATTGAAGCGGAAACCGTCGCGCTCAAGCCTC
CATCGCGCGAAGAACAAGCTAAGGATTGGTTCAACGCTGTTTTGGCAGAC
CGCGACCCCCACCCTGCCTTTGGGCGGGCCACGGAGGAAGGGGTGGAGCG
CTTTCTGGCAGGGGAAACGAGGGCACCGACCCGGCGAGAAGAGGCATGGC
GGTTCACGGATCTAAGCCGTCTGTATGGGCGACGGCCATCGAAGCCTCCC
GCGGTCCTACAGCCGGCCCAGGTGACCGCATTGAAGGCGAAGATCGAGGA
ACACACCTTGGAGGTGTGCGAAGGACGGGTCGTGGTCTTCGTGGACGGCG
TCCACCGACCCGAGTTGTCCCACGTGGCGAGGTTAAAGGAGGAAGGGCCG
AAGGAGGGGTGGAGAGCGGGCAGCATATTTGAGTTCTCGAAGGAGGAGCA
GGAGGAGTTGTTCCGGGAGGTCGAGTGGGCGCCGGAGGTCGGGCTCCGGC
ACACGTTGGCGTCCGGTTCCTTGCCCTTTTCGTGCTTGAACCAGGCCTGT
GTGAAAGACGCGGCCTGCCTGGTGGTGGACGAACGGGGAGAGATGTCGGC
GCCCGTGCAATTTATCTTCGTCTCCACCTCCAGCCAAGGGGAAGGCGGGG
CGGAGGGGGAGAAAGACGTGCGAGTTTCCCACCCGCGCTTGGCGGTGGTG
GCGCGAAAACGCTCGGCAGGAAAATTTGTCCAGTCCTACATCGACATAGG
CTCGGGAACAGCCTTGGCGAATGCCTGCACCACGGTGCGTGTGGACCGAC
GGGCGGAAGTGCAGCACTTGCACGCCAACGAGCTGGGCCCGAGGGGCCTC
ATGTTTGACGCGGTCTCTGTCACGACCAAGAAATTGAGCGCCTACAAGAA
CGTGTTCGTGAACGTGGGGGGGGAGTTGGGCCGGGTCAATTTCCAAGCGA
CCTTGAACGGGACGGAGGGACGGGTGGACACGGAGGGGGTGACCATCACT
GGGGAGGAACAAGAACTCGATATCCACTCCTACATCCACCATCGCCGGAA
AGGCGGGGAGAGTAACATGTACCAGTGCAACATTGTGAGTGGGGACAGCC
ACTGCGTGTTCAAGGGACGGATGAAATTGGAGCCACGAGCACGGGGGGTG
ACGGCGGACCAGCTGATTCGCTCCATCATGCTCACGGACTCCTGCACCGT
GGACGCCATGCCCACCTTGGAGGTGTGTTCGGGGGATGTGGACTGCACGC
ACGGGGCCACGGTGGCGGATATCGACGAGAACGAAGCTTTCTACCTTCAG
TCCAGAGGCATATCACGCCGGGAGGCACGCCAGGTGTTGATGATGGGCTT
CGCTGCTCAGGTATACAACCAGATCCCGTGCGAAAAAATGAAGAAGAGGC
TGGGTGAACGGCTCTATGACGTGTGCCCAGATGTAGGCATAGCCAAGAAG
TACGAGTACTTGAGTGTGTAGATGACTCCGAGGCAGCAATACACGGGGTC
GCGGCGACGCGGGGCCACTACGGGCTTCATAATGGCGGCAACTGCAGTAG
CAGCAGTAGGAGTCGCACAAGCCTTTCTAGCCCCCTTCAACCCGCCTGCG
CAAGGGGGAATTGGAGTACAAAAAGCAAGCAATATAATGCATCAACAGCA
TCAACAAAAGCATAGCATAAGGAACACCCGTCTCGCGGCCACCCTCGCTG
ACCGTCCCCGGTCCACATCTTTCGAGGAGTCAAGCAAAGAAATTGAAGCG
GAAACCGTCGCGCTCAAGCCTCCATCGCGCGAAGAACAAGCTAAGGATTG
GTTCAACGCTGTTTTGGCAGACCGCGACCCCCACCCTGCCTTTGGGCGGG
CCACGGAGGAAGGGGTGGAGCGCTTTCTGGCAGGGGAAACGAGGGCACCG
ACCCGGCGAGAAGAGGCATGGCGGTTCACGGATCTAAGCCGTCTGTATGG
GCGACGGCCATCGAAGCCTCCCGCGGTCCTACAGCCGGCCCAGGTGACCG
CATTGAAGGCGAAGATCGAGGAACACACCTTGGAGGTGTGCGAAGGACGG
GTCGTGGTCTTCGTGGACGGCGTCCACCGACCCGAGTTGTCCCACGTGGC
GAGGTTAAAGGAGGAAGGGCCGAAGGAGGGGTGGAGAGCGGGCAGCATAT
TTGAGTTCTCGAAGGAGGAGCAGGAGGAGTTGTTCCGGGAGGTCGAGTGG
GCGCCGGAGGTCGGGCTCCGGCACACGTTGGCGTCCGGTTCCTTGCCCTT
TTCGTGCTTGAACCAGGCCTGTGTGAAAGACGCGGCCTGCCTGGTGGTGG
ACGAACGGGGAGAGATGTCGGCGCCCGTGCAATTTATCTTCGTCTCCACC
TCCAGCCAAGGGGAAGGCGGGGCGGAGGGGGAGAAAGACGTGCGAGTTTC
CCACCCGCGCTTGGCGGTGGTGGCGCGAAAACGCTCGGCAGGAAAATTTG
TCCAGTCCTACATCGACATAGGCTCGGGAACAGCCTTGGCGAATGCCTGC
ACCACGGTGCGTGTGGACCGACGGGCGGAAGTGCAGCACTTGCACGCCAA
CGAGCTGGGCCCGAGGGGCCTCATGTTTGACGCGGTCTCTGTCACGACCA
AGAAATTGAGCGCCTACAAGAACGTGTTCGTGAACGTGGGGGGGGAGTTG
GGCCGGGTCAATTTCCAAGCGACCTTGAACGGGACGGAGGGACGGGTGGA
CACGGAGGGGGTGACCATCACTGGGGAGGAACAAGAACTCGATATCCACT
CCTACATCCACCATCGCCGGAAAGGCGGGGAGAGTAACATGTACCAGTGC
AACATTGTGAGTGGGGACAGCCACTGCGTGTTCAAGGGACGGATGAAATT
GGAGCCACGAGCACGGGGGGTGACGGCGGACCAGCTGATTCGCTCCATCA
TGCTCACGGACTCCTGCACCGTGGACGCCATGCCCACCTTGGAGGTGTGT
TCGGGGGATGTGGACTGCACGCACGGGGCCACGGTGGCGGATATCGACGA
GAACGAAGCTTTCTACCTTCAGTCCAGAGGCATATCACGCCGGGAGGCAC
GCCAGGTGTTGATGATGGGCTTCGCTGCTCAGGTATACAACCAGATCCCG
TGCGAAAAAATGAAGAAGAGGCTGGGTGAACGGCTCTATGACGTGTGCCC
AGATGTAGGCATAGCCAAGAAGTACGAGTACTTGAGTGTGTAGATGACTC
CGAGGCAGCAATACACGGGGTCGCGGCGACGCGGGGCCACTACGGGCTTC
ATAATGGCGGCAACTGCAGTAGCAGCAGTAGGAGTCGCACAAGCCTTTCT
AGCCCCCTTCAACCCGCCTGCGCAAGGGGGAATTGGAGTACAAAAAGCAA
GCAATATAATGCATCAACAGCATCAACAAAAGCATAGCATAAGG back to top
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