EWM30100.1, cds571 (CDS) Nannochloropsis gaditana

Overview
NameEWM30100.1
Unique Namecds571
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:1420050..1420250 -
Alignment locationCM002455.1:1418097..1419617 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM30100.1
Productassembly protein
Orig transcript idgnl|cribi|Naga_100258g3.3328.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:1420050..1420250 -
CM002455.1supercontigCM002455.1:1418097..1419617 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0009058biosynthetic process
GO:0016043cellular component organization
GO:0016226iron-sulfur cluster assembly
Vocabulary: INTERPRO
TermDefinition
IPR000825SUF_FeS_clus_asmbl_SufBD
Homology
BLAST of EWM30100.1 vs. NCBI_GenBank
Match: gi|585112743|gb|EWM30100.1| (assembly protein [Nannochloropsis gaditana])

HSP 1 Score: 1187.94 bits (3072), Expect = 0.000e+0
Identity = 573/573 (100.00%), Postives = 573/573 (100.00%), Query Frame = 0
Query:    1 MTPRQQYTGSRRRGATTGFIMAATAVAAVGVAQAFLAPFNPPAQGGIGVQKASNIMHQQHQQKHSIRNTRLAATLADRPRSTSFEESSKEIEAETVALKPPSREEQAKDWFNAVLADRDPHPAFGRATEEGVERFLAGETRAPTRREEAWRFTDLSRLYGRRPSKPPAVLQPAQVTALKAKIEEHTLEVCEGRVVVFVDGVHRPELSHVARLKEEGPKEGWRAGSIFEFSKEEQEELFREVEWAPEVGLRHTLASGSLPFSCLNQACVKDAACLVVDERGEMSAPVQFIFVSTSSQGEGGAEGEKDVRVSHPRLAVVARKRSAGKFVQSYIDIGSGTALANACTTVRVDRRAEVQHLHANELGPRGLMFDAVSVTTKKLSAYKNVFVNVGGELGRVNFQATLNGTEGRVDTEGVTITGEEQELDIHSYIHHRRKGGESNMYQCNIVSGDSHCVFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCTHGATVADIDENEAFYLQSRGISRREARQVLMMGFAAQVYNQIPCEKMKKRLGERLYDVCPDVGIAKKYEYLSV 573
            MTPRQQYTGSRRRGATTGFIMAATAVAAVGVAQAFLAPFNPPAQGGIGVQKASNIMHQQHQQKHSIRNTRLAATLADRPRSTSFEESSKEIEAETVALKPPSREEQAKDWFNAVLADRDPHPAFGRATEEGVERFLAGETRAPTRREEAWRFTDLSRLYGRRPSKPPAVLQPAQVTALKAKIEEHTLEVCEGRVVVFVDGVHRPELSHVARLKEEGPKEGWRAGSIFEFSKEEQEELFREVEWAPEVGLRHTLASGSLPFSCLNQACVKDAACLVVDERGEMSAPVQFIFVSTSSQGEGGAEGEKDVRVSHPRLAVVARKRSAGKFVQSYIDIGSGTALANACTTVRVDRRAEVQHLHANELGPRGLMFDAVSVTTKKLSAYKNVFVNVGGELGRVNFQATLNGTEGRVDTEGVTITGEEQELDIHSYIHHRRKGGESNMYQCNIVSGDSHCVFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCTHGATVADIDENEAFYLQSRGISRREARQVLMMGFAAQVYNQIPCEKMKKRLGERLYDVCPDVGIAKKYEYLSV
Sbjct:    1 MTPRQQYTGSRRRGATTGFIMAATAVAAVGVAQAFLAPFNPPAQGGIGVQKASNIMHQQHQQKHSIRNTRLAATLADRPRSTSFEESSKEIEAETVALKPPSREEQAKDWFNAVLADRDPHPAFGRATEEGVERFLAGETRAPTRREEAWRFTDLSRLYGRRPSKPPAVLQPAQVTALKAKIEEHTLEVCEGRVVVFVDGVHRPELSHVARLKEEGPKEGWRAGSIFEFSKEEQEELFREVEWAPEVGLRHTLASGSLPFSCLNQACVKDAACLVVDERGEMSAPVQFIFVSTSSQGEGGAEGEKDVRVSHPRLAVVARKRSAGKFVQSYIDIGSGTALANACTTVRVDRRAEVQHLHANELGPRGLMFDAVSVTTKKLSAYKNVFVNVGGELGRVNFQATLNGTEGRVDTEGVTITGEEQELDIHSYIHHRRKGGESNMYQCNIVSGDSHCVFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCTHGATVADIDENEAFYLQSRGISRREARQVLMMGFAAQVYNQIPCEKMKKRLGERLYDVCPDVGIAKKYEYLSV 573          
BLAST of EWM30100.1 vs. NCBI_GenBank
Match: gi|553192746|ref|XP_005855638.1| (assembly protein [Nannochloropsis gaditana CCMP526] >gi|422293427|gb|EKU20727.1| assembly protein [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 1179.85 bits (3051), Expect = 0.000e+0
Identity = 571/573 (99.65%), Postives = 572/573 (99.83%), Query Frame = 0
Query:    1 MTPRQQYTGSRRRGATTGFIMAATAVAAVGVAQAFLAPFNPPAQGGIGVQKASNIMHQQHQQKHSIRNTRLAATLADRPRSTSFEESSKEIEAETVALKPPSREEQAKDWFNAVLADRDPHPAFGRATEEGVERFLAGETRAPTRREEAWRFTDLSRLYGRRPSKPPAVLQPAQVTALKAKIEEHTLEVCEGRVVVFVDGVHRPELSHVARLKEEGPKEGWRAGSIFEFSKEEQEELFREVEWAPEVGLRHTLASGSLPFSCLNQACVKDAACLVVDERGEMSAPVQFIFVSTSSQGEGGAEGEKDVRVSHPRLAVVARKRSAGKFVQSYIDIGSGTALANACTTVRVDRRAEVQHLHANELGPRGLMFDAVSVTTKKLSAYKNVFVNVGGELGRVNFQATLNGTEGRVDTEGVTITGEEQELDIHSYIHHRRKGGESNMYQCNIVSGDSHCVFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCTHGATVADIDENEAFYLQSRGISRREARQVLMMGFAAQVYNQIPCEKMKKRLGERLYDVCPDVGIAKKYEYLSV 573
            MTPRQQYTGSRRRGA+TGFIMAATAVAA GVAQAFLAPFNPPAQGGIGVQKASNIMHQQHQQKHSIRNTRLAATLADRPRSTSFEESSKEIEAETVALKPPSREEQAKDWFNAVLADRDPHPAFGRATEEGVERFLAGETRAPTRREEAWRFTDLSRLYGRRPSKPPAVLQPAQVTALKAKIEEHTLEVCEGRVVVFVDGVHRPELSHVARLKEEGPKEGWRAGSIFEFSKEEQEELFREVEWAPEVGLRHTLASGSLPFSCLNQACVKDAACLVVDERGEMSAPVQFIFVSTSSQGEGGAEGEKDVRVSHPRLAVVARKRSAGKFVQSYIDIGSGTALANACTTVRVDRRAEVQHLHANELGPRGLMFDAVSVTTKKLSAYKNVFVNVGGELGRVNFQATLNGTEGRVDTEGVTITGEEQELDIHSYIHHRRKGGESNMYQCNIVSGDSHCVFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCTHGATVADIDENEAFYLQSRGISRREARQVLMMGFAAQVYNQIPCEKMKKRLGERLYDVCPDVGIAKKYEYLSV
Sbjct:    1 MTPRQQYTGSRRRGASTGFIMAATAVAA-GVAQAFLAPFNPPAQGGIGVQKASNIMHQQHQQKHSIRNTRLAATLADRPRSTSFEESSKEIEAETVALKPPSREEQAKDWFNAVLADRDPHPAFGRATEEGVERFLAGETRAPTRREEAWRFTDLSRLYGRRPSKPPAVLQPAQVTALKAKIEEHTLEVCEGRVVVFVDGVHRPELSHVARLKEEGPKEGWRAGSIFEFSKEEQEELFREVEWAPEVGLRHTLASGSLPFSCLNQACVKDAACLVVDERGEMSAPVQFIFVSTSSQGEGGAEGEKDVRVSHPRLAVVARKRSAGKFVQSYIDIGSGTALANACTTVRVDRRAEVQHLHANELGPRGLMFDAVSVTTKKLSAYKNVFVNVGGELGRVNFQATLNGTEGRVDTEGVTITGEEQELDIHSYIHHRRKGGESNMYQCNIVSGDSHCVFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCTHGATVADIDENEAFYLQSRGISRREARQVLMMGFAAQVYNQIPCEKMKKRLGERLYDVCPDVGIAKKYEYLSV 572          
BLAST of EWM30100.1 vs. NCBI_GenBank
Match: gi|299472231|emb|CBN77201.1| (FeS assembly protein SufD [Ectocarpus siliculosus])

HSP 1 Score: 224.557 bits (571), Expect = 9.391e-63
Identity = 152/425 (35.76%), Postives = 209/425 (49.18%), Query Frame = 0
Query:  110 WFNAVLADRDPHPAFGRATEEGVERFLAGETRAPTRREEAWRFTDLSRLYGRRPSKPPAVLQPAQVTALKAKIEEHTLEVCEGRVVVFVDGVHRPELSHVARLKEEGPKEGWRAGSIFEFSKEEQEELFREVEWAPEVGLRHTLASGSLPFSCLNQACVKDAACLVVDERGEMSAPVQFIFVSTSSQGEGGAEGEKDVRVSHPRLAVVARKRSAGKFVQSYIDIGSGTALANACTTVRVDRRAEVQHLHANELGPRGLMFDAVSVTTKKLSAYKNVFVNVGGELGRVNFQATLNGTEGRVDTEGVTITGEEQELDIHSYIHHRRKGGESNMYQCNIVSGDSHCVFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCTHGATVADIDENEAFYLQSRGISRREARQVLMMGF 534
            WF+A+     P P       +  E  LA E   PTR++E +R+TDL  LY    +   +           A I+ H LE  +G+ +VFV+GV   ELS V+ L   G  EG  AG I        ++    + + PE         GSL F+ LNQAC  DA  ++V +   +  P+Q IF S         EGE+   VSHPRL V A   S     QSY+  G G  LAN  T V V  RA V H +A E+     + D VSV     S Y    V  G    R NFQ  L  T    +     +T   Q  D+HS I H+ +G      Q N+VS  + CVFKGR+ ++  A+   A+QL R+++++D   V  MP++E+ + DV CTHGAT+ D+++ E FYL SRGIS+      + MGF
Sbjct:  121 WFDAIREGAVPRPDSLVELSKAGEAELA-ELALPTRKQEPYRYTDLESLY---RTDFTSAAPTTTAAETAAAIKPHLLEASQGQQMVFVNGVFSDELSDVSAL---GGVEGLVAGHIGAIEGAPLDQAKEMLSYLPEKDADFRTTQGSLAFASLNQACFADAGVIMVADGVTVEKPIQVIFFS---------EGEEGPTVSHPRLVVKAGADSHVTLTQSYLSRG-GVCLANGFTRVLVGDRATVTHDYAEEMSASDRLVDTVSVDQTTNSTYSVNQVLSGAFDARANFQIDLLETGSHCNIFTAALTTNNQRQDVHSTIRHKAEGTTCLQEQRNVVSDTADCVFKGRIVIDQVAQKTDANQLCRTLLVSDKARVTVMPSMEIIANDVKCTHGATICDLEDEELFYLMSRGISK------IQMGF 522          
BLAST of EWM30100.1 vs. NCBI_GenBank
Match: gi|499783422|ref|WP_011464156.1| (Fe-S cluster assembly protein SufD [Rhodoferax ferrireducens] >gi|89345385|gb|ABD69588.1| Iron-regulated ABC transporter permease protein SufD [Rhodoferax ferrireducens T118])

HSP 1 Score: 212.616 bits (540), Expect = 4.364e-59
Identity = 136/425 (32.00%), Postives = 212/425 (49.88%), Query Frame = 0
Query:  130 EGVERFLAGETRAPTRREEAWRFTDLSRLYGRR---PSKPPAVLQPAQVTALKAKIEEHTLEVCEGRVVVFVDGVHRPELSHVARLKEEGPKEGWRAGSIFEFSKEEQEELFREVEWAPEVGLRHTLASGSLPFSCLNQACVKDAACLVVDERGEMSAPVQFIFVSTSSQGEGGAEGEKDVRVSHPRLAVVARKRSAGKFVQSYIDIGSGTALANACTTVRVDRRAEVQHLHANELGPRGLMFDAVSVTTKKLSAYKNVFVNVGGELGRVNFQATLNGTEGRVDTEGVTITGEEQELDIHSYIHHRRKGGESNMYQCNIVSGDSHCVFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCTHGATVADIDENEAFYLQSRGISRREARQVLMMGFAAQVYNQIPCEKMKKRL 551
            + +ER   G    P+  +EAWRFT L+  + R+   P + P  L P  +  L   IEE T  +      VFVDGVH P+LS    LK   P  G   G++      +   +       P +G +H LA     F+ LN A ++DAA LVV     ++APV  +++ST          + DV  SHPRL +VA   S    ++ Y+ +  GT   NA   V +   A+V H+       +     + +V+    S Y +  + +GG++ R++ +   +        +G+ + G +Q  D H++I H +  G S      IV G +H VF G++ + P A+   + Q  R+++L+    VD  P LE+ + DV CTHGATV  +D +E FYLQSRG+S   AR +L   F A+V N+IP   ++++L
Sbjct:   42 QALERV--GALTLPSTHDEAWRFTPLAT-FARQSFHPLRTPTALLPGDIKHLH--IEEVTTRL------VFVDGVHAPQLS---SLK---PDAGLAVGTLASMLARQASSI------EPHLG-QH-LAFHDALFAALNTAFLQDAAVLVVPRETTLAAPVHVLYIST----------QPDV-ASHPRLLLVAGAGSKATLIEDYVALHPGTYFTNAVAEVALGANAQVSHVRIQRESQQAFHMASCAVSLGAASRYHSASITLGGQISRLDLKVLQSADAAECALDGLALIGGQQLADTHTFIDHAKPHGVSRQLHKCIVGGAAHAVFNGQVMVRPGAQKTDSAQSSRNLLLSGKAQVDTQPQLEIFADDVKCTHGATVGQLDSDEVFYLQSRGLSEAVARNLLTYAFGAEVINRIPVASLRRQL 430          
BLAST of EWM30100.1 vs. NCBI_GenBank
Match: gi|1056309517|ref|WP_067766001.1| (Fe-S cluster assembly protein SufD [Nostoc sp. NIES-3756] >gi|953509672|dbj|BAT52360.1| hypothetical protein NOS3756_12950 [Nostoc sp. NIES-3756])

HSP 1 Score: 202.601 bits (514), Expect = 2.933e-55
Identity = 133/412 (32.28%), Postives = 201/412 (48.79%), Query Frame = 0
Query:  143 PTRREEAWRFTDLSRLYGRRPSKPPAVLQPAQVTALKAKIEEHTLEVCEGRVVVFVDGVHRPELSHVARLKEEGPKEGWRAGSIFEFSKEEQE---ELFREVEWAPEVGLRHTLASGSLPFSCLNQACVKDAACLVVDERGEMSAPVQFIFVSTSSQGEGGAEGEKDVRVSHPRLAVVARKRSAGKFVQSYIDIGSGTALANACTTVRVDRRAEVQHLHANELGPRGLMFDAVSVTTKKLSAYKNVFVNVGGELGRVNFQATLNGTEGRVDTEGVTITGEEQELDIHSYIHHRRKGGESNMYQCNIVSGDSHCVFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCTHGATVADIDENEAFYLQSRGISRREARQVLMMGFAAQVYNQIPCEKMKKRL 551
            PT REE WRFTDLS L  R+       +QP +++AL         E    R+V FV+GV+ PELS VA L    PK G   G++   S  EQE   +   + E A EV            F+ LN A + D A ++V +   +  P+  +F+S +  G+G         +S PR+ VVA   S    ++ ++    G  L NA T + +   A+V H                +VT  + S Y    +++GG++ R N +    G +      G+T+    Q  D HS I      G SN     IV   +H VF G++ +   A+   A QL R+++L+    VD  P LE+ + +V C HGATV+ ++++E FYLQSRGI    AR++L+  FA ++ NQIP   ++ +L
Sbjct:   62 PTTREEEWRFTDLSEL--RKVEFQAGKVQPVEISALSLS------EAANSRLV-FVNGVYAPELSAVADL----PK-GVVVGNLSTISSTEQECVQKYLAQSEGALEV------------FTALNTAGISDVAVVLVAKNVIVETPIHLLFISVA--GDGAT-------ISQPRVLVVAESGSQVSVIEEFVTPAEGVYLTNAVTEIAIADNAQVVHTRVERDSKAAFHIGKTAVTQARYSRYTCHTLSLGGKISRHNLEVLQTGEQTETTLNGLTMIAGNQLADTHSAIALNHPYGTSNQLHKCIVGDRAHAVFNGKVFVPKPAQLTNAAQLNRNLLLSSKARVDTKPQLEITADNVKCAHGATVSQLEDDEIFYLQSRGIDSNNARKLLVNAFATEIINQIPISSLRDKL 438          
BLAST of EWM30100.1 vs. NCBI_GenBank
Match: gi|652382748|ref|WP_026778676.1| (Fe-S cluster assembly protein SufD [Polaromonas sp. EUR3 1.2.1])

HSP 1 Score: 201.06 bits (510), Expect = 8.774e-55
Identity = 134/465 (28.82%), Postives = 215/465 (46.24%), Query Frame = 0
Query:   95 TVALKPPSREEQAKDWFNAVLADRDPHPAFGRATEEGVERFLAGETRAPTRREEAWRFTDLSRLYGR--RPSKPPAVLQPAQVTALKAKIEEHTLEVCEGRVVVFVDGVHRPELSHVARLKEEGPKEGWRAGSIFEFSKEEQEELFREVEWAPEVGLRHTLASGSLPFSCLNQACVKDAACLVVDERGEMSAPVQFIFVSTSSQGEGGAEGEKDVRVSHPRLAVVARKRSAGKFVQSYIDIGSGTALANACTTVRVDRRAEVQHLHANELGPRGLMFDAVSVTTKKLSAYKNVFVNVGGELGRVNFQATLNGTEGRVDTEGVTITGEEQELDIHSYIHHRRKGGESNMYQCNIVSGDSHCVFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCTHGATVADIDENEAFYLQSRGISRREARQVLMMGFAAQVYNQIPCEKMKKRLGERLYD 557
            ++A  P S      +W NA+ A             E +ER   G    PT  +EAWRFT++S L  +   P + P  LQ   +  L   IEE T        +VFVDGVH P+LS +    E G      + ++   +   ++ L +   +   +            F  LN A + DAA ++V     ++ PV  +F+ST          + D+  SHPR+ +VA   SA   ++ Y  +  G    NA   V +   A+V+H+       +     + +V+    S Y +V + +G ++ R+               +G+ + G EQ  D H++I H +  G S      IV G +H VF G++ + P A+   + Q  R+++LT    VD  P LE+ + DV CTHGATV  +D  E FYLQSRG+    AR +L   F A+V ++IP   ++++L + + +
Sbjct:   18 SLAPAPGSLAPTTLEWLNALRA-------------EALERV--GALTLPTPHDEAWRFTNISALTRKSFHPLRTPTALQAGDIGHL--HIEEATTR------LVFVDGVHAPQLSSIT--AEAGVVVSTLSAAVKTHALVIEQHLGQHAPFHDAL------------FPALNTAFLHDAAVVIVPRETLIATPVHLLFLST----------QPDL-ASHPRVLLVAESGSAVTVIEDYAALHDGAYFTNALAEVVLAANAQVEHIRVQRESGQAFHMASCAVSLGAASRYHSVSIALGAQISRLALSVVQTADAAECSLDGLALIGAEQLADTHTFIDHAKPHGVSRQLHKCIVGGAAHAVFNGKVMVRPGAQKTDSAQSSRNLLLTGKALVDTQPQLEIFADDVKCTHGATVGQLDSEEVFYLQSRGLPETVARNLLTYAFGAEVIDRIPVASLRRQLEQTVLE 434          
BLAST of EWM30100.1 vs. NCBI_GenBank
Match: gi|160331083|ref|XP_001712249.1| (sufD [Hemiselmis andersenii] >gi|159765696|gb|ABW97924.1| sufD [Hemiselmis andersenii])

HSP 1 Score: 201.445 bits (511), Expect = 1.238e-54
Identity = 125/470 (26.60%), Postives = 236/470 (50.21%), Query Frame = 0
Query:   89 KEIEAETVALKPPSREEQA---KDWFNAVLADRDPHPAFGRATEEGVERFLAGETRAPTRREEAWRFTDLSRLYGRRPSKPPAVLQPAQVTALKAKIEEHTLEVCEGRVVVFVDGVHRPELSHVARLKEEGPKEGWRAGSIFEFSKEEQEELFREVEWAPEVGLRHTLASGSLPFSCLNQACVKDAACLVVDERGEMSAPVQFIFVSTSSQGEGGAEGEKDVRVSHPRLAVVARKRSAGKFVQSYIDIGSGTALANACTTVRVDRRAEVQHLHANELGPRGLMFDAVSVTTKKLSAYKNVFVNVGGELGRVNFQATLNGTEGRVDTEGVTITGEEQELDIHSYIHHRRKGGESNMYQCNIVSGDSHCVFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCTHGATVADIDENEAFYLQSRGISRREARQVLMMGFAAQVYNQIPCEKMKKRLGERL 555
            ++I+ + + +K  +  E      +W N++L       +F       +   +   T  P++++E+WRFT L RL+G + +   +     +V A    +++  LE  + R V F++GV  P L      +     + +  G   + +++E++++ R++    E G+      G  P   LN A + + A L +    ++  P+Q +F S+++        E  + ++  +L +V  K S  K +Q ++         N+ TT+ VD  A++     N++  +   F+++    +K S++  +  + GG L R++    LNG     + EGVT+    Q  DIHS I H     +S+  Q N++S   H +F G++++   A    ++QL +S++L+ +  VD+MP LE+ + DV CTHG+TV+D+D+ + FY +SRGI   +AR +L +GF  ++      EK+ K L E L
Sbjct:   26 RKIDKKYLNMKKENLNEHKTVNSEWINSILFQEKQKSSFNINQLRKIGNNILKNTNFPSKKDESWRFTKLDRLFGMKFANSDS-----EVNA--DFVKKFFLENSQARCV-FLNGVFFPSL-----FQARENTDSYFLGRFSDLNEKERKKI-RDLAGKGESGIN----GGFFP--ILNLANLDEIAVLYIKADSKIKDPIQILFSSSTN--------ETPICINQ-KLIIVCEKNSKAKIIQHHVGSNESEFFDNSTTTILVDEEAQIDFFLINQVTEKASNFNSIHADLRKGSSFNFLSASFGGFLSRISLGIDLNGINASCNVEGVTVVKNSQISDIHSRISHNYPLCKSSQLQKNLISDKGHAIFAGKVQVHNGAYETESNQLCKSLLLSQTSKVDSMPILEINNEDVKCTHGSTVSDLDQEQLFYFKSRGIPIEKARFLLTIGFIKEI-----IEKLPKELNENL 461          
BLAST of EWM30100.1 vs. NCBI_GenBank
Match: gi|1120203260|ref|WP_073070909.1| (Fe-S cluster assembly protein SufD [Phormidesmis priestleyi])

HSP 1 Score: 200.675 bits (509), Expect = 1.736e-54
Identity = 132/418 (31.58%), Postives = 202/418 (48.33%), Query Frame = 0
Query:  136 LAGETRAPTRREEAWRFTDLSRLYGRRPSKPPAVLQPA--QVTALKAKIEEHTLEVCEGRVVVFVDGVHRPELSHVARLKEEGPKEGWRAGSIFEFSKEEQEELFREVEWAPEVGLRHTLASGSLPFSCLNQACVKDAACLVVDERGEMSAPVQFIFVSTSSQGEGGAEGEKDVRVSHPRLAVVARKRSAGKFVQSYIDIGSGTALANACTTVRVDRRAEVQHLHANELGPRGLMFDAVSVTTKKLSAYKNVFVNVGGELGRVNFQATLNGTEGRVDTEGVTITGEEQELDIHSYIHHRRKGGESNMYQCNIVSGDSHCVFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCTHGATVADIDENEAFYLQSRGISRREARQVLMMGFAAQVYNQIPCEKMKKRL 551
            +A E   PT R+E WRFTDLS L            QP   Q T   A+IE   L       +VFV+G++ P+LS V  L E        AG   +     Q  L ++ + + EV            F+ LN A + DAA + V +  E+  P+Q +FVSTS  G+          +SHPR  V+A   S+   ++ Y+ I  G    NA T + +   A+V H      G          V+  + S Y    +++G ++ R N +    G + +    G+T+   EQ  D HS I   +  G S+  Q  IV   +H +F G++ +   A+   A QL R+++L+    VD  P LE+ + +V C HGATV+ ++++E FYLQSRG+++ EAR++L   FA ++ N IP   +K  L
Sbjct:   52 IAQELAIPTTRDEEWRFTDLSSLVQIN-------FQPIHDQPTISFAQIESFILPEAVNSRLVFVNGIYAPDLSAVDDLPEGVLVGNLSAG--IQLIPSLQNYLAKQ-QGSEEV------------FTVLNTASLIDAAIVHVPKNQEVETPIQLLFVSTS--GDTAT-------ISHPRCLVIAESGSSLTLIEEYVTIADGGYFTNAVTEIAIAENAQVSHTRVQREGETAFHIGKTVVSQARDSRYTCNAISLGAKISRHNLEVYQTGEQTQTTLNGLTMINGEQVGDTHSKIAFTKPYGTSDQVQKCIVGDRAHAIFNGKVSVPQAAQLTNAAQLSRNLLLSPRARVDTKPQLEITADNVKCAHGATVSQLEDDEVFYLQSRGLNQEEARKLLTYAFAIEIINHIPVASLKANL 438          
BLAST of EWM30100.1 vs. NCBI_GenBank
Match: gi|655012139|ref|WP_028461199.1| (Fe-S cluster assembly protein SufD [Nitrosomonas cryotolerans] >gi|1097164187|emb|SFP60728.1| Iron-regulated ABC transporter permease protein SufD [Nitrosomonas cryotolerans] >gi|1116015163|emb|SIO29927.1| Iron-regulated ABC transporter permease protein SufD [Nitrosomonas cryotolerans ATCC 49181])

HSP 1 Score: 199.904 bits (507), Expect = 2.218e-54
Identity = 130/439 (29.61%), Postives = 210/439 (47.84%), Query Frame = 0
Query:  120 PHPAFGRATEEGVERFLAGETRAPTRREEAWRFTDLSRLYGRRPSKPPAVLQPAQVTAL--KAKIEEHTLEVCEGRVVVFVDGVHRPELSHVARLKEEGPKEGWRAGSIFEFSKEEQE----ELFREVEWAPEVGLRHTLASGSLPFSCLNQACVKDAACLVVDERGEMSAPVQFIFVSTSSQGEGGAEGEKDVRVSHPRLAVVARKRSAGKFVQSYIDIGSGTALANACTTVRVDRRAEVQHLHANELGPRGLMFDAVSVTTKKLSAYKNVFVNVGGELGRVNFQATLNGTEGRVDTEGVTITGEEQELDIHSYIHHRRKGGES-NMYQCNIVSGDSHCVFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCTHGATVADIDENEAFYLQSRGISRREARQVLMMGFAAQVYNQIPCEKMKKRL 551
            P P   +   + ++R   G  R PT R+E WRFTD+S L      K P   QPAQ+T+    A IE   LE    R+V F+DG + PELS+V        K    AG++ E +    +     L + VE+   V            F+  N A + D A +++     ++ PV  +F++T          +K+V  S+ R  V+    S    ++ Y+ +   T + N  T + +  RA+V H+       +   F   +V+    S Y++V + +G  + R N    L         +G+ +  ++Q  D H+ I H +  G S  +++C IV G +H VF GR+ + P A+   + Q  R+++LT    VD  P LE+ + DV C HGATV  +D  E FYL+SRG+S   AR +L   F A++ ++I    ++ +L
Sbjct:   24 PLPWLNQLRSQAIDR--VGMLRMPTTRDEEWRFTDISPLI-----KLP--FQPAQITSQLQSADIESFYLEEATTRLV-FIDGHYAPELSNVP------DKSNIIAGNLSEIALTHTDIIAAHLGQYVEFQDNV------------FAAFNTAFLLDGAVIIIPHDTSVTTPVHLLFIAT----------QKEV-TSYSRCLVIGETGSNATIIEDYVALQESTYVTNTVTEISLAARAQVNHIRVQRDSNQAFHFANAAVSLAHTSHYQSVNITLGARISRHNLNVRLTDEASTCAIDGLALIADQQLADTHTDIDHLKPHGTSRQLHKC-IVDGAAHAVFNGRIMVHPNAQRTNSSQSSRNLLLTRKAHVDTKPQLEIFADDVKCAHGATVGQLDNEEIFYLKSRGLSEIAARNLLTYAFGAEIIDRISIASLRNQL 422          
BLAST of EWM30100.1 vs. NCBI_GenBank
Match: gi|1210120820|dbj|BAY39944.1| (hypothetical protein NIES2111_43250 [Nostoc sp. NIES-2111])

HSP 1 Score: 198.749 bits (504), Expect = 9.692e-54
Identity = 133/412 (32.28%), Postives = 200/412 (48.54%), Query Frame = 0
Query:  143 PTRREEAWRFTDLSRLYGRRPSKPPAVLQPAQVTALKAKIEEHTLEVCEGRVVVFVDGVHRPELSHVARLKEEGPKEGWRAGSIFEFSKEEQE---ELFREVEWAPEVGLRHTLASGSLPFSCLNQACVKDAACLVVDERGEMSAPVQFIFVSTSSQGEGGAEGEKDVRVSHPRLAVVARKRSAGKFVQSYIDIGSGTALANACTTVRVDRRAEVQHLHANELGPRGLMFDAVSVTTKKLSAYKNVFVNVGGELGRVNFQATLNGTEGRVDTEGVTITGEEQELDIHSYIHHRRKGGESNMYQCNIVSGDSHCVFKGRMKLEPRARGVTADQLIRSIMLTDSCTVDAMPTLEVCSGDVDCTHGATVADIDENEAFYLQSRGISRREARQVLMMGFAAQVYNQIPCEKMKKRL 551
            PT REE WRFTDLS L  R+       +QP  ++AL         E    R+V FV+GV+ PELS VA L    PK G   G++   S  EQE   +   + E A EV            F+ LN A + D A ++V +   +  P+  +F+S +        G++   +S PR  VVA   S    ++ ++    G  L NA T + +   A+V H                +VT  + S Y    +++GG++ R N +    G +      G+T+    Q  D HS I      G SN     IV   +H VF G++ +   A+   A QL R+++L+    VD  P LE+ + +V C HGATV+ ++++E FYLQSRGI    AR++L+  FAA++ NQIP   ++ +L
Sbjct:   62 PTTREEEWRFTDLSEL--RKVEFQAGKVQPVDISALSLS------EAANSRLV-FVNGVYAPELSAVADL----PK-GVVVGNLSTISSTEQECVQKYLAQSEGALEV------------FTALNTAGISDVAVVLVAKNVIVETPIHLLFISVA--------GDR-ATISQPRALVVAESGSQVSVIEEFVTPAEGVYLTNAVTEIAIADNAQVVHTRVERDSKAAFHIGKTAVTQARYSRYTCHTLSLGGKISRHNLEVLQTGEQTETTLNGLTMIAGNQLADTHSAIALNHPYGTSNQLHKCIVGDRAHAVFNGKVFVPKPAQLTNAAQLNRNLLLSSKARVDTKPQLEITADNVKCAHGATVSQLEDDEIFYLQSRGIDSNNARKLLVNAFAAEIINQIPHPSLRDKL 438          
The following BLAST results are available for this feature:
BLAST of EWM30100.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585112743|gb|EWM30100.1|0.000e+0100.00assembly protein [Nannochloropsis gaditana][more]
gi|553192746|ref|XP_005855638.1|0.000e+099.65assembly protein [Nannochloropsis gaditana CCMP526... [more]
gi|299472231|emb|CBN77201.1|9.391e-6335.76FeS assembly protein SufD [Ectocarpus siliculosus][more]
gi|499783422|ref|WP_011464156.1|4.364e-5932.00Fe-S cluster assembly protein SufD [Rhodoferax fer... [more]
gi|1056309517|ref|WP_067766001.1|2.933e-5532.28Fe-S cluster assembly protein SufD [Nostoc sp. NIE... [more]
gi|652382748|ref|WP_026778676.1|8.774e-5528.82Fe-S cluster assembly protein SufD [Polaromonas sp... [more]
gi|160331083|ref|XP_001712249.1|1.238e-5426.60sufD [Hemiselmis andersenii] >gi|159765696|gb|ABW9... [more]
gi|1120203260|ref|WP_073070909.1|1.736e-5431.58Fe-S cluster assembly protein SufD [Phormidesmis p... [more]
gi|655012139|ref|WP_028461199.1|2.218e-5429.61Fe-S cluster assembly protein SufD [Nitrosomonas c... [more]
gi|1210120820|dbj|BAY39944.1|9.692e-5432.28hypothetical protein NIES2111_43250 [Nostoc sp. NI... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna571rna571Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications