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Properties
Property Name | Value |
Product | intraflagellar transport protein 88 |
Orig transcript id | gnl|cribi|Naga_100122g6.3577.mrna |
Orig protein id | gnl|cribi|Naga_100122g6.3577 |
Gbkey | mRNA |
Note | encoded by transcript variant 2; alternatively spliced |
Alignments
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
CM002466.1 | supercontig | CM002466.1:635126..638814 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5706 ID=rna5706|Name=rna5706|organism=Nannochloropsis gaditana|type=mRNA|length=2335bp CCACGCTGCACATCAGATTTCGATTCTGTCACTTCTTTGATTCCAATTTC AAATGATGCGAGCCCGTATCGGTGCCCTGGCAGTCAGTACTCAGAGAAGT CATCTCGTGGAGACAGCGACGAGAACGAGCGACTTTGCGATGGGCCTTCC GCGTCCCATGGCCATACGACCCGTGGGTACTGCAGAATAACTTTTAACTA TTTCTTAACATTTCCCGTTCTGAGGATATGAACATGTAAGCGTGACATGC ATTGAAAGTTCAGTACGGAAAGCTGACGGTCCAATGCACATACAGGCCTA AGCTCAGCTATCAATAAAGAAGCAGGATACTGTCCGAGTGCCACCAAGAT CTTACAAAATTCTGAATTTGCACCACTTTTACTCATCGACAGTGTTCATC TCATGGCGGACGTAATGGCGCCTATAGCACCAAATCAAACGCCGGTGGCC GCCATTTGCTGCATGTGCGCGATAAACATCCAGCCGAACCCTACAAACAT GTGCCTGCAATGTCTGCGGACGCAGGTGAACATTGCATCCGGCCTATCGA CACGCGTGACCATGCACCAATGTCGTGGCTGCCTGAAGTACATGGGAGGC TCCGGAGGCACTGGCTGGTCACATTACGAGGCCGAGTCCCGCGAGCTGAT GGCCGTATGCTTGCGCAAGGTTGCTGGTCTCAACCGTCTTCGCCTGGTCG ACGCTGGATGGATTTGGACGGAGCCCCACTCGAAACGTCTAAAATTAAAA CTGACCGTCCAACAAGAAGTCATGAATGGAGCGGTGCTCCAAGAGGCAGT GGTTGTCGAGTTCGTGGTTCGCAACCAGCAGTGCCCTGACTGCCAAGCCT CGTACACGATCGGGGCCTGGAAAGCCATCGTGCAAGTCCGACAGCGTGTG GACCACAAACGGACATTTTTGCATTTGGAACAGCTCATCCTCAAGCACAA CGCGCATGCACAAGCCTTGCAGATCCAGGGCTTTGCGGACGGGATGGACT TTTACTTTGCGGAACGCAACCAAGCGGCGCGTTTCACCGAGTTCCTGGAG ACCGCCTGCCCTGTCCGGGTAAAGCAATCCAAAAAACTGGTTTCACAGGA CGATCATTCCAACGTCTTCAACTACAAGTACACCACAATCATCGAGATCG TCCCGGTCTGCAAGGACGATTTGGTGATCCTGCCCACTAAACTCGCTCAG AACCTGGGGGACATCGCTCGCCTGTGCTTGGTCTTGCGTGTGCTGAACCA CCTCCACCTCATCGACCCCCTCACCGGCCAGACGGCGGAAGTCTCTGTGG AGAAATATCACAAGGCTGGGTTTGAATTTCGCGCCCTGCTTTCCGCGTCC CGCCTGGTCGAATTCATGGTCCTCGGCTCTGAGCCTGCCTTGGCCCCCAC TAAGACGTCGGCGCCCGCGCGGCGCTCGAAGCGGCATCGACTGGCGGAAG TGGAGGTGGCCCTGATGTCGGATTTGGGCGCGAATGATACTCGGTACCGG GTGTTCACCCACTTGGGGCACATTTTGCGGGCGGGTGACACTGTGCTTGG ATACCTGCTGGCGACCGCCTCTTTGAATAGTGCCGACGCGGACGAGCTGG AGACCAAGACACGGGCGGGCTTGCCGGATGCGGTTTTGGTGCGGAAGGTG TATTCTAACGAAGGGCGAATCAGGCCGGCCTGGAGGCTGAAGAAATTCGA GGCGGACGAGATGGAGGTGGTGGAGGCTGGAAACGCGGAGCAGGAGGATC GAGATTTGCGTGACTATCGTCAGCAATTGGAGGGAGACAGGGAGATGCGA CGGAGAGTGAACATGTACAAGGCGGGACGACCATTGCCGGGGGGTGCCGA GGACACGGACCACGAGAACGCGGCGCTTGGACAGAAGGCGGGGAAGACTA AGGGCAAGGTAGAGAAAATGACTGTAGTTTCTGCCATGGGCGAAGGAGAT GGAAGCACGCGACTGGATGAGAGGGATCGCTCCACGAATGAGGGCCTGGG AGAGGACGTCGGGGAGGACGACGAGGAGGCCTTGCGCTTGGATGAACTGC TGGATGATCTGGAATTGGACGATCCCGACGCACCGCCCGACGACCATGAG GCTCAAGTTCTCGTGGGGGATGTGTCAAGCACTGGTATTGCCGGGGTGTC AAAGGACTTCGCGTTCACATTCCAACCGAAGACAAGGAACGATGATAGGG ACGGGAATCACGCAAAAACCAAAGATGAGCAAGACGCTGAGGAGATTTAT AAAGAGCTGTAGTGTTGTTTGAGTTGTGAATTGGTGTAATAAAACAAGAT ATCATAAGAGACGAAAGAAAGAAATACTCGAACAC back to topprotein sequence of rna5706 >rna5706-protein ID=rna5706-protein|Name=rna5706|organism=Nannochloropsis gaditana|type=polypeptide|length=651bp MSEEDHSPSYVARRRPRPPQHPPPPSGAPPLHSAAYRASRRGPTEAKIAT KQSRKDAKVATPPLTAVSGAGYGRQVGPLIASAGDHKSQPDKPAFPSVHR TFLPDPAVQSTGASKPSTVSLVPTQDDKPEAVARCLETQVHALLEASAFA SRSGQLGLALNKAKEAQKKERALTRARESSNLVDAMNGELTYAVALHLGS MYEGNGMEDEALHVYRGLLEQRALLPPVAGWARLNMGNVYYRKGRYAEAV KMYRMTLDQIPSTSHKAMRLKVYRNIGYAFVRLQEWQEAVQALEIIVLNP ITHLNGERAGTAGEDGMGGALVGSQGGGQGAGGNKAGLSRSQADPTIVLP SSAAFSTSLLGSPRTVVFGDYFRTAYLLLMCYLVLGEVVKMKRAFAKMVS TLPTPLEEDEDIEEEAAAEKEGGARQVCGPGGGVERDDEMELWEAAAGGR RTRKRETENTARDAEEQVKPDFLREEMQRRRQEGVRYVLAAGKLLAPVVE ATGGRDGYQWVVEALKRGNHGEVACLMELERASACVREKRFDPAVEILRS FERKEIPVKAWAASSLSFVYFLEGELEKAEELANLAVEHNSYNASALVNK ANCVFQRGDVGAAKDLYLEALGVEAGCLEGESRGECFTSKTPCLVARGVV L back to topmRNA from alignment at CM002466.1:635126..638814+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5706 ID=rna5706|Name=rna5706|organism=Nannochloropsis gaditana|type=mRNA|length=3689bp|location=Sequence derived from alignment at CM002466.1:635126..638814+ (Nannochloropsis gaditana) ccaaaACTGTGAGAAAAACTAGCCCTGGACATTTATCATGCAACCCTCAT
TCTCAGCTAAATACACCGTGATACACAGCATAGCCCGGTATTATGTCTGA
AGAAGATCATAGTCCTTCGTACGTCGCGCGGCGACGTCCGCGCCCGCCtc
agcatcctcctccaccttcggGTGCTCCACCCCTTCATTCGGCTGCCTAC
CGCGCCAGCCGTAGAGGCCCTACGGAAGCGAAAATCGCAACCAAGCAAAG
CAGAAAAGATGCAAAAGTTGCCACACCACCATTAACTGCCGTTTCAGGGG
CAGGGTACGGAAGACAGGTGGGCCCATTAATCGCAAGCGCTGGTGATCAC
AAGAGTCAGCCTGACAAGCCTGCGTTTCCAAGTGTGCATCGTACGTTTCT
TCCAGACCCTGCCGTTCAAAGCACCGGTGCCAGCAAGCCCTCTACTGTCT
CGCTTGTCCCCACGCAAGACGACAAGCCGGAAGCCGTGGCAAGGTGCTTG
GAAACTCAGGTTCACGCGTTGCTTGAGGCTTCAGCGTTCGCATCCCGCTC
TGGGCAACTGGGGCTGGCCTTGAACAAAGCAAAAGAAGCGCAAAAGAAGG
AGCGGGCACTAACCCGCGCTCGAGAATCTAGCAACTTAGTTGACGCCATG
AACGGAGAGCTCACATACGCCGTAGCGTTGCACCTGGGCAGCATGTACGA
AGGCAAtggcatggaggacgaggccctCCACGTGTATCGAGGTCTCTTGG
AGCAGCGGGCTCTGCTGCCGCCCGTCGCTGGGTGGGCTCGCTTGAACATG
GGAAACGTGTACTACCGGAAAGGACGCTACGCCGAGGCCGTCAAAATGTA
CCGCATGACGTTGGATCAGATTCCCAGTACGAGCCATAAGGCCATGCGCC
TGAAGGTGTATCGCAACATCGGGTACGCCTTCGTGCGGCTTCAAGAATGG
CAGGAAGCGGTGCAGGCCTTGGAAATCATCGTACTGAATCCCATCACGCA
TTTGAACGGGGAAAGAgcgggcacggcgggcgAAGATGGGATGGGGGGCG
CCTTGGTGGGCAGTCAGGGCGGCGGACAGGGCGCAGGAGGGAACAAGGCG
GGCCTGTCAAGGAGCCAAGCGGACCCAACCATCGTATTGCCTTCCTCAGC
CgctttttccacctcccttctcggCTCCCCGCGAACGGTGGTGTTCGGTG
ACTATTTCCGGACGGCATACTTGCTCTTGATGTGCTACCTGGtcctgggg
gaggtggtgaaaaTGAAGCGGGCATTCGCCAAGATGGTCTCCACGCTGCC
CACGcccttggaagaggacgaagatatcgaggaggaagccgcggcggaaa
aagagggaggggccagacAGGTCTGCGGACCGGGCGGTGGGGTAGAGAGG
GATGACGAGATGGAGCTATGGGAGGCTGCAgcggggggacggaggacgcg
AAAACGAGAAACGGAGAACACAGCACGGGATGCAGAAGAGCAAGTGAAGC
CCGATTTTTTGCGCGAAGAAATGCAGCGACGACGGCAGGAGGGAGTTCGG
TACGTGCTGGCTGCAGGGAAGCTTCTTGCACCCGTTGTGGAGGCGACAGG
AGGTCGCGACGGGTATCagtgggtggtggaggccttgaagcGGGGAAACC
ACGGCGAGGTGGCCTGCTTAATGGAGCTTGAGCGCGCATCGGCCTGTGTC
CGTGAGAAGCGCTTCGACCCTGCCGTGGAGATCCTGCGGTCGTTCGAGAG
GAAAGAGATCCCGGTCAAGGCGTGGGCCGCGAGCAGTTTGTCTTTCGTTT
ATTTCTTGGAGGGGGAattggagaaggcggaggagctggccaACCTAGCT
GTGGAACACAACAGGTAaacgtggaggggagggaccaaTCATGCGCTTAC
CAAAGGGATTCCGAGCCTTTCCGGGCTTTTGCTAGGCTCGACCTAGGCCG
GACTCTGCCTAAccagctttcctccctttctttcccttcttcgcctcttc
ccccggccAATCTGTACCCGCCTTCTCGTTCTCTGTACTCGCTTAGCTAC
AACGCCAGTGCCCTTGTTAATAAGGCGAACTGCGTTTTCCAGCGGGGAGA
CGTGGGCGCCGCCAAAGACCTGTATTTGGAGGCCTTAGGCGTGGAGGCAG
GATGCCTCGAGGGTGAGTCGAGGGGGGAGTGTTTCACGTCCAAGACTCCT
TGTCTCGTGGCACGGGGGGTTGTACTGTAAGTGTGTGTGCTTGGTTTGAT
GGACAATCAAGAGGCCGCAGAGGCCGCTAGAAGGGGTTCCATCCgacccc
cctgcctccgtctccttgcATGCTCACCCGCTATGCTTTatttcttcccg
ccctcgcccctctcctaGCCCTTTTCAACTTGGGCGTCGCCAACCTTCGG
CTCGGGCGTCTCAGTGACGCGCAAGATGCCTACGAGAAGCTTCACACGCT
CACCCCTCATTGCCCCGAGGTCCTCTACCAGCTCGGTCATATCGCCGAGG
GCCAAGGTCAAGCGTCGGAGGCGATTCGCTGGTTCCAAGTCTTGCTCGCG
GAGTTGAGGGCGCGGGgcaaggggatggggaaagagaagatgtTGTACca
aagagatggaaggggggggtcgaatagaggcgtggaggaggggggatgga
cgTCGTCTTCGTCGCTGGGCTTGTCCTCCgggtcctctctctcctcaccc
tcgACGCCAGGAGCGGGCAGCCACACAATGATGGGAGGggaccttcctcc
cagcaCCATCGACGCGGTCAGCGGCGGGATGGCAGCTGTGGACGACGAAG
TCCTGGCACGGCTTGGTCGACTCTACGACgcggagggggcagaggcgCAG
GCCTTGCATCATTTCCAGGAGAGCGACCGCGTGAATCCTTTCAATCTGGA
GGTCATTTCCTGGCTGGGCCTTTGGTTCGCCCGGCAGGAGCAGGTGTGtg
cgatggagggggggaagggagaggacaatAGGGACAGAGCGGTGGCGCCA
GCGTGCTGCCGGGGATGGCGAAGGGCTCACGGCAAGCGAGTCggcaggag
gggcggtgTGTGCGAAGCCAAGGACAAGGGTACCTGGCTCGAGAAAGCGA
TGTGGAATGCGCGttgttccccctccctctctaggGCTCATTTCtgcccc
cctttcttccgccacAGTACACGACTGCCCTCATCTACTTCCATCGAGCC
GCGGTGGTCCAACCGGACTCTTCCCGCTGGCCTCTCATGCAGGCCAgctg
ccatcgccgcctcggaGATTTCTTGCAAGCCCTGAAGATCTACGAATGTG
TGCATGCAGCGCACCCGGAGGACACAGACTGCTTGAAAGCCCTGGTCACC
TTGTGTCGGGACCTCGGACGGCCGTGGGAAGGCTACCAGCAGCGGTTGCT
TAGACTGCAGGAAGCTGGGCGGAGTGAGGGGGAAGCgtcccggggggagg
gggcaaggggtattggggaaagggcaacgggagagagaggagagctGCGG
GGCTTGGGTCGGGACGGGCGAGGGTGGGTgttgaaagggaagaagaaagg
cacgGAGGCCATTGACGTGGACGTGAGCAAGCTCTTAATCTGAcgcggga
gaaaggatggCGTGCAATTTTGTGGGAAGTGGACAGAATAAGTGGGAGGG
CGCACACATGCAGGatcgaagaaaaaaaaaggtgcCTGA back to topCoding sequence (CDS) from alignment at CM002466.1:635126..638814+ >rna5706 ID=rna5706|Name=rna5706|organism=Nannochloropsis gaditana|type=CDS|length=3912bp|location=Sequence derived from alignment at CM002466.1:635126..638814+ (Nannochloropsis gaditana) ATGTCTGAAGAAGATCATAGTCCTTCGTACGTCGCGCGGCGACGTCCGCG CCCGCCtcagcatcctcctccaccttcggGTGCTCCACCCCTTCATTCGG CTGCCTACCGCGCCAGCCGTAGAGGCCCTACGGAAGCGAAAATCGCAACC AAGCAAAGCAGAAAAGATGCAAAAGTTGCCACACCACCATTAACTGCCGT TTCAGGGGCAGGGTACGGAAGACAGGTGGGCCCATTAATCGCAAGCGCTG GTGATCACAAGAGTCAGCCTGACAAGCCTGCGTTTCCAAGTGTGCATCGT ACGTTTCTTCCAGACCCTGCCGTTCAAAGCACCGGTGCCAGCAAGCCCTC TACTGTCTCGCTTGTCCCCACGCAAGACGACAAGCCGGAAGCCGTGGCAA GGTGCTTGGAAACTCAGGTTCACGCGTTGCTTGAGGCTTCAGCGTTCGCA TCCCGCTCTGGGCAACTGGGGCTGGCCTTGAACAAAGCAAAAGAAGCGCA AAAGAAGGAGCGGGCACTAACCCGCGCTCGAGAATCTAGCAACTTAGTTG ACGCCATGAACGGAGAGCTCACATACGCCGTAGCGTTGCACCTGGGCAGC ATGTACGAAGGCAAtggcatggaggacgaggccctCCACGTGTATCGAGG TCTCTTGGAGCAGCGGGCTCTGCTGCCGCCCGTCGCTGGGTGGGCTCGCT TGAACATGGGAAACGTGTACTACCGGAAAGGACGCTACGCCGAGGCCGTC AAAATGTACCGCATGACGTTGGATCAGATTCCCAGTACGAGCCATAAGGC CATGCGCCTGAAGGTGTATCGCAACATCGGGTACGCCTTCGTGCGGCTTC AAGAATGGCAGGAAGCGGTGCAGGCCTTGGAAATCATCGTACTGAATCCC ATCACGCATTTGAACGGGGAAAGAgcgggcacggcgggcgAAGATGGGAT GGGGGGCGCCTTGGTGGGCAGTCAGGGCGGCGGACAGGGCGCAGGAGGGA ACAAGGCGGGCCTGTCAAGGAGCCAAGCGGACCCAACCATCGTATTGCCT TCCTCAGCCgctttttccacctcccttctcggCTCCCCGCGAACGGTGGT GTTCGGTGACTATTTCCGGACGGCATACTTGCTCTTGATGTGCTACCTGG tcctgggggaggtggtgaaaaTGAAGCGGGCATTCGCCAAGATGGTCTCC ACGCTGCCCACGcccttggaagaggacgaagatatcgaggaggaagccgc ggcggaaaaagagggaggggccagacAGGTCTGCGGACCGGGCGGTGGGG TAGAGAGGGATGACGAGATGGAGCTATGGGAGGCTGCAgcggggggacgg aggacgcgAAAACGAGAAACGGAGAACACAGCACGGGATGCAGAAGAGCA AGTGAAGCCCGATTTTTTGCGCGAAGAAATGCAGCGACGACGGCAGGAGG GAGTTCGGTACGTGCTGGCTGCAGGGAAGCTTCTTGCACCCGTTGTGGAG GCGACAGGAGGTCGCGACGGGTATCagtgggtggtggaggccttgaagcG GGGAAACCACGGCGAGGTGGCCTGCTTAATGGAGCTTGAGCGCGCATCGG CCTGTGTCCGTGAGAAGCGCTTCGACCCTGCCGTGGAGATCCTGCGGTCG TTCGAGAGGAAAGAGATCCCGGTCAAGGCGTGGGCCGCGAGCAGTTTGTC TTTCGTTTATTTCTTGGAGGGGGAattggagaaggcggaggagctggcca ACCTAGCTGTGGAACACAACAGCTACAACGCCAGTGCCCTTGTTAATAAG GCGAACTGCGTTTTCCAGCGGGGAGACGTGGGCGCCGCCAAAGACCTGTA TTTGGAGGCCTTAGGCGTGGAGGCAGGATGCCTCGAGGGTGAGTCGAGGG GGGAGTGTTTCACGTCCAAGACTCCTTGTCTCGTGGCACGGGGGGTTGTA CTGTAAATGTCTGAAGAAGATCATAGTCCTTCGTACGTCGCGCGGCGACG TCCGCGCCCGCCtcagcatcctcctccaccttcggGTGCTCCACCCCTTC ATTCGGCTGCCTACCGCGCCAGCCGTAGAGGCCCTACGGAAGCGAAAATC GCAACCAAGCAAAGCAGAAAAGATGCAAAAGTTGCCACACCACCATTAAC TGCCGTTTCAGGGGCAGGGTACGGAAGACAGGTGGGCCCATTAATCGCAA GCGCTGGTGATCACAAGAGTCAGCCTGACAAGCCTGCGTTTCCAAGTGTG CATCGTACGTTTCTTCCAGACCCTGCCGTTCAAAGCACCGGTGCCAGCAA GCCCTCTACTGTCTCGCTTGTCCCCACGCAAGACGACAAGCCGGAAGCCG TGGCAAGGTGCTTGGAAACTCAGGTTCACGCGTTGCTTGAGGCTTCAGCG TTCGCATCCCGCTCTGGGCAACTGGGGCTGGCCTTGAACAAAGCAAAAGA AGCGCAAAAGAAGGAGCGGGCACTAACCCGCGCTCGAGAATCTAGCAACT TAGTTGACGCCATGAACGGAGAGCTCACATACGCCGTAGCGTTGCACCTG GGCAGCATGTACGAAGGCAAtggcatggaggacgaggccctCCACGTGTA TCGAGGTCTCTTGGAGCAGCGGGCTCTGCTGCCGCCCGTCGCTGGGTGGG CTCGCTTGAACATGGGAAACGTGTACTACCGGAAAGGACGCTACGCCGAG GCCGTCAAAATGTACCGCATGACGTTGGATCAGATTCCCAGTACGAGCCA TAAGGCCATGCGCCTGAAGGTGTATCGCAACATCGGGTACGCCTTCGTGC GGCTTCAAGAATGGCAGGAAGCGGTGCAGGCCTTGGAAATCATCGTACTG AATCCCATCACGCATTTGAACGGGGAAAGAgcgggcacggcgggcgAAGA TGGGATGGGGGGCGCCTTGGTGGGCAGTCAGGGCGGCGGACAGGGCGCAG GAGGGAACAAGGCGGGCCTGTCAAGGAGCCAAGCGGACCCAACCATCGTA TTGCCTTCCTCAGCCgctttttccacctcccttctcggCTCCCCGCGAAC GGTGGTGTTCGGTGACTATTTCCGGACGGCATACTTGCTCTTGATGTGCT ACCTGGtcctgggggaggtggtgaaaaTGAAGCGGGCATTCGCCAAGATG GTCTCCACGCTGCCCACGcccttggaagaggacgaagatatcgaggagga agccgcggcggaaaaagagggaggggccagacAGGTCTGCGGACCGGGCG GTGGGGTAGAGAGGGATGACGAGATGGAGCTATGGGAGGCTGCAgcgggg ggacggaggacgcgAAAACGAGAAACGGAGAACACAGCACGGGATGCAGA AGAGCAAGTGAAGCCCGATTTTTTGCGCGAAGAAATGCAGCGACGACGGC AGGAGGGAGTTCGGTACGTGCTGGCTGCAGGGAAGCTTCTTGCACCCGTT GTGGAGGCGACAGGAGGTCGCGACGGGTATCagtgggtggtggaggcctt gaagcGGGGAAACCACGGCGAGGTGGCCTGCTTAATGGAGCTTGAGCGCG CATCGGCCTGTGTCCGTGAGAAGCGCTTCGACCCTGCCGTGGAGATCCTG CGGTCGTTCGAGAGGAAAGAGATCCCGGTCAAGGCGTGGGCCGCGAGCAG TTTGTCTTTCGTTTATTTCTTGGAGGGGGAattggagaaggcggaggagc tggccaACCTAGCTGTGGAACACAACAGCTACAACGCCAGTGCCCTTGTT AATAAGGCGAACTGCGTTTTCCAGCGGGGAGACGTGGGCGCCGCCAAAGA CCTGTATTTGGAGGCCTTAGGCGTGGAGGCAGGATGCCTCGAGGGTGAGT CGAGGGGGGAGTGTTTCACGTCCAAGACTCCTTGTCTCGTGGCACGGGGG GTTGTACTGTAA back to top
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