EWM24990.1, cds5691 (CDS) Nannochloropsis gaditana

Overview
NameEWM24990.1
Unique Namecds5691
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:635218..636989 +
Alignment locationCM002466.1:637172..637355 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24990.1
Productintraflagellar transport protein 88
Orig transcript idgnl|cribi|Naga_100122g6.3577.mrna
GbkeyCDS
Noteencoded by transcript variant 2; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:635218..636989 +
CM002466.1supercontigCM002466.1:637172..637355 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005575cellular_component
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR013026TPR-contain_dom
IPR011990TPR-like_helical_dom
IPR019734TPR_repeat
Homology
BLAST of EWM24990.1 vs. NCBI_GenBank
Match: gi|585106622|gb|EWM24989.1| (intraflagellar transport protein 88 [Nannochloropsis gaditana] >gi|585106623|gb|EWM24990.1| intraflagellar transport protein 88 [Nannochloropsis gaditana])

HSP 1 Score: 1328.92 bits (3438), Expect = 0.000e+0
Identity = 651/651 (100.00%), Postives = 651/651 (100.00%), Query Frame = 0
Query:    1 MSEEDHSPSYVARRRPRPPQHPPPPSGAPPLHSAAYRASRRGPTEAKIATKQSRKDAKVATPPLTAVSGAGYGRQVGPLIASAGDHKSQPDKPAFPSVHRTFLPDPAVQSTGASKPSTVSLVPTQDDKPEAVARCLETQVHALLEASAFASRSGQLGLALNKAKEAQKKERALTRARESSNLVDAMNGELTYAVALHLGSMYEGNGMEDEALHVYRGLLEQRALLPPVAGWARLNMGNVYYRKGRYAEAVKMYRMTLDQIPSTSHKAMRLKVYRNIGYAFVRLQEWQEAVQALEIIVLNPITHLNGERAGTAGEDGMGGALVGSQGGGQGAGGNKAGLSRSQADPTIVLPSSAAFSTSLLGSPRTVVFGDYFRTAYLLLMCYLVLGEVVKMKRAFAKMVSTLPTPLEEDEDIEEEAAAEKEGGARQVCGPGGGVERDDEMELWEAAAGGRRTRKRETENTARDAEEQVKPDFLREEMQRRRQEGVRYVLAAGKLLAPVVEATGGRDGYQWVVEALKRGNHGEVACLMELERASACVREKRFDPAVEILRSFERKEIPVKAWAASSLSFVYFLEGELEKAEELANLAVEHNSYNASALVNKANCVFQRGDVGAAKDLYLEALGVEAGCLEGESRGECFTSKTPCLVARGVVL 651
            MSEEDHSPSYVARRRPRPPQHPPPPSGAPPLHSAAYRASRRGPTEAKIATKQSRKDAKVATPPLTAVSGAGYGRQVGPLIASAGDHKSQPDKPAFPSVHRTFLPDPAVQSTGASKPSTVSLVPTQDDKPEAVARCLETQVHALLEASAFASRSGQLGLALNKAKEAQKKERALTRARESSNLVDAMNGELTYAVALHLGSMYEGNGMEDEALHVYRGLLEQRALLPPVAGWARLNMGNVYYRKGRYAEAVKMYRMTLDQIPSTSHKAMRLKVYRNIGYAFVRLQEWQEAVQALEIIVLNPITHLNGERAGTAGEDGMGGALVGSQGGGQGAGGNKAGLSRSQADPTIVLPSSAAFSTSLLGSPRTVVFGDYFRTAYLLLMCYLVLGEVVKMKRAFAKMVSTLPTPLEEDEDIEEEAAAEKEGGARQVCGPGGGVERDDEMELWEAAAGGRRTRKRETENTARDAEEQVKPDFLREEMQRRRQEGVRYVLAAGKLLAPVVEATGGRDGYQWVVEALKRGNHGEVACLMELERASACVREKRFDPAVEILRSFERKEIPVKAWAASSLSFVYFLEGELEKAEELANLAVEHNSYNASALVNKANCVFQRGDVGAAKDLYLEALGVEAGCLEGESRGECFTSKTPCLVARGVVL
Sbjct:    1 MSEEDHSPSYVARRRPRPPQHPPPPSGAPPLHSAAYRASRRGPTEAKIATKQSRKDAKVATPPLTAVSGAGYGRQVGPLIASAGDHKSQPDKPAFPSVHRTFLPDPAVQSTGASKPSTVSLVPTQDDKPEAVARCLETQVHALLEASAFASRSGQLGLALNKAKEAQKKERALTRARESSNLVDAMNGELTYAVALHLGSMYEGNGMEDEALHVYRGLLEQRALLPPVAGWARLNMGNVYYRKGRYAEAVKMYRMTLDQIPSTSHKAMRLKVYRNIGYAFVRLQEWQEAVQALEIIVLNPITHLNGERAGTAGEDGMGGALVGSQGGGQGAGGNKAGLSRSQADPTIVLPSSAAFSTSLLGSPRTVVFGDYFRTAYLLLMCYLVLGEVVKMKRAFAKMVSTLPTPLEEDEDIEEEAAAEKEGGARQVCGPGGGVERDDEMELWEAAAGGRRTRKRETENTARDAEEQVKPDFLREEMQRRRQEGVRYVLAAGKLLAPVVEATGGRDGYQWVVEALKRGNHGEVACLMELERASACVREKRFDPAVEILRSFERKEIPVKAWAASSLSFVYFLEGELEKAEELANLAVEHNSYNASALVNKANCVFQRGDVGAAKDLYLEALGVEAGCLEGESRGECFTSKTPCLVARGVVL 651          
BLAST of EWM24990.1 vs. NCBI_GenBank
Match: gi|553190484|ref|XP_005855201.1| (intraflagellar transport 88-like protein, partial [Nannochloropsis gaditana CCMP526] >gi|422293861|gb|EKU21161.1| intraflagellar transport 88-like protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 249.595 bits (636), Expect = 1.216e-76
Identity = 119/120 (99.17%), Postives = 120/120 (100.00%), Query Frame = 0
Query:  163 AKEAQKKERALTRARESSNLVDAMNGELTYAVALHLGSMYEGNGMEDEALHVYRGLLEQRALLPPVAGWARLNMGNVYYRKGRYAEAVKMYRMTLDQIPSTSHKAMRLKVYRNIGYAFVR 282
            AKEAQKKERALTRARESSNLVDAMNGELTYAVALHLGSMYEGNGMEDEALHVYRGLLEQRALLPPVAGWARLNMGNVYYRKGRYAEA+KMYRMTLDQIPSTSHKAMRLKVYRNIGYAFVR
Sbjct:    1 AKEAQKKERALTRARESSNLVDAMNGELTYAVALHLGSMYEGNGMEDEALHVYRGLLEQRALLPPVAGWARLNMGNVYYRKGRYAEAIKMYRMTLDQIPSTSHKAMRLKVYRNIGYAFVR 120          
BLAST of EWM24990.1 vs. NCBI_GenBank
Match: gi|676388029|ref|XP_009037293.1| (hypothetical protein AURANDRAFT_10223, partial [Aureococcus anophagefferens] >gi|323452044|gb|EGB07919.1| hypothetical protein AURANDRAFT_10223, partial [Aureococcus anophagefferens])

HSP 1 Score: 216.853 bits (551), Expect = 2.124e-58
Identity = 184/568 (32.39%), Postives = 261/568 (45.95%), Query Frame = 0
Query:   63 PLTAVSGAGYGRQVGPLIASAGDHKSQPDKPAFPSVHRTFLPDPAVQSTGASKPSTVSLVPTQDDKPEAVARCLETQVHALLEASAFASRSGQLGLALNKAKEAQKKERALTRARESSNLVDAMNGELTYAVALHLGSMYEGNGMEDEALHVYRGLLEQRALLPPVAGWARLNMGNVYYRKGRYAEAVKMYRMTLDQIPSTSHKAMRLKVYRNIGYAFVRLQEWQEAVQALEIIVLNPITHLNGERAGTAGEDGMGGALVGSQGGGQGAGGNKAGLSRSQADPTIVLPSSAAFSTSLLGSPRTVVFGDYFRTAYLLLMCYLVLGEVVKMKRAFAKMVSTLPTPLEEDEDIEEEAAAEKEGGARQVCGPGGGVERDDEMELWEAAAGGRRTRKRETENTARDAEEQVKPDFLREEMQRRRQEGVRYVLAAGKLLAPVVEA-TGGRDGYQWVVEALKRGNHGEVACLMELERASACVREKRFDPAVEILRSFERKEIPVKAWAASSLSFVYFLEGELEKAEELANLAVEHNSYNASALVNKANCVFQRGDVGAAKDLYLEALGVEAGCLE 629
            P+T+ SGAG+  + G   A                  R F  DP  Q  G + P    L    D+ PE  AR  E QVHAL+EASA A+  G    AL KAK+A K+ERAL + RE+  LVD +N +LTYAV  +L   Y    M DEALH Y  L++ +                                    Q P +     RL+V  N+G  +   Q++Q A++   +  L+ I +  G+         +G A V     G                         ++ T + G P        F T + L++CY  LG+  KM+R F K++S    PL                         GG  +DD              +   T + AR        D LR E++RR +E   Y+L A +L+AP ++A      GY+ +++ALK  +H  +A  ME+ERA   +R K FD A+E L++FE+K+  +KA AA++LSF+YFLEG+L  AE  A+LA E + YNA ALVNK NC+  + +   AK  YLEA+GVEA C+E
Sbjct:    7 PMTSTSGAGFSTKQGGAAA------------------RGF--DPLGQGRGPAPP----LAERADNSPEDQAREFEKQVHALVEASAAAALEGNHDAALEKAKDAGKRERALCKHREAHGLVDQINIDLTYAVCFNLAHAYHSARMHDEALHTYSLLVKNK------------------------------------QYPQSG----RLRV--NMGNIYYEQQKYQTAIKMYRMAALDQIPN-TGKHIRFKIFRNIGNAFVRLGQFGDAV---------------------QSYETIMGGDPD-------FHTGFNLILCYYALGDAEKMRRGFQKLISI---PL-----------------------ASGGDAKDD-------------AKATATRDLAR-------ADGLRHELKRREKEAHGYMLTAARLIAPELKAPDDAMVGYRLIIDALK-PDHELLASEMEIERALKYMRNKDFDKAIEALKAFEKKDQHLKAMAATNLSFIYFLEGDLRAAERYADLAYEQDRYNARALVNKGNCLTVKHEHETAKQFYLEAIGVEADCVE 432          
BLAST of EWM24990.1 vs. NCBI_GenBank
Match: gi|567961687|gb|ETK87224.1| (hypothetical protein L915_08299 [Phytophthora parasitica] >gi|567990418|gb|ETL40648.1| hypothetical protein L916_08224 [Phytophthora parasitica] >gi|570951843|gb|ETP17100.1| hypothetical protein F441_08446 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 216.853 bits (551), Expect = 8.132e-57
Identity = 168/590 (28.47%), Postives = 271/590 (45.93%), Query Frame = 0
Query:   46 AKIATKQSRKDAKVATPPLTAVSGAGYGRQVGPLIASAGDHKSQPDKPAFPSVHRTFLPDPAVQSTGASKPSTVSLVPTQDDKPEAVARCLETQVHALLEASAFASRSGQLGLALNKAKEAQKKERALTRARESSNLVDAMNGELTYAVALHLGSMYEGNGMEDEALHVYRGLLEQRALLPPVAGWARLNMGNVYYRKGRYAEAVKMYRMTLDQIPSTSHKAM----RLKVYRNIGYAFVRLQEWQEAVQALEIIVLNPITHLNGERAGTAGEDGMGGALVGSQGGGQGAGGNKAGLSRSQADPTIVLPSSAAFSTSLLGSPRTVVFGDYFRTAYLLLMCYLVLGEVVKMKRAFAKMVSTLPTP--LEEDEDIEEEAAAEKEGGARQVCGPGGGVERDDEMELWEAAAGGRRTRKRETENTARDAEEQVKPDFLREEMQRRRQEGVRYVLAAGKLLAPVVEATGGRDGYQWVVEALKRGNHGEVACLMELERASACVREKRFDPAVEILRSFERKEIPVKAWAASSLSFVYFLEGELEKAEELANLAVEHNSYNASALVNKANCVFQRGDVGAAKDLYLEALGVEAGCLE 629
            +++ T Q   DA+    P+T+VSGAG+                    P      R F P    +  GA+     +LV   ++ P+ VA+ LE  V+AL+E SA      Q   AL+ AK+A +KERA  +  E + L D +N +LTYAV                                        N+ N Y+  G + EA++ Y       P   +K      RL+V  N+G  +   Q++  A++   +  L+ I + + E       + +GGA +   G  Q A      +    AD                           F++ + L++CY  +GE  KM+R F  ++ T+P     EEDED                                E+          +T  ++++    +K D L+ E++ RR++ + Y+L A KL AP ++      G+ WV++ALK+ NH  +A  ME+ +A   ++EK FD A+E+L++FE+K+   KA AA++LS++YF+EG+  +A++ A+LAV H  YNA ALVNK NC++ + +   AK+L+LEA+GVEA C+E
Sbjct:   81 SRMGTAQQSSDAR----PMTSVSGAGFS-----------------SNPRTAGGQRMFDPMGESRKAGAAP----ALVEKTENSPKEVAKELERTVNALIEQSAELIAKEQYEEALHSAKDAGRKERAFNKHCELNGLADMLNIDLTYAVFF--------------------------------------NLANAYHLNGLWKEAIQSY------TPIVKNKQYAQGGRLRV--NMGNIYFEQQQYPTAIRMYRM-ALDQIPNTSKEVRYKIKRN-IGGAQI-KLGHYQDAAATFEDIMEGNAD---------------------------FQSGFNLIICYYAIGEHEKMRRGFTNLI-TIPMEGMSEEDED--------------------------------ESGLANESKHNDDTHTSSKEHLHSLKTDGLKAEIRARRKKAMEYILVAAKLCAPALDKKDWLAGFTWVIDALKQENHESLASEMEICKAHWFLKEKEFDKAIEVLKAFEKKDPAHKAMAATNLSYLYFVEGDTAQADKYASLAVRHQRYNAKALVNKGNCLYVKNECERAKELFLEAIGVEADCIE 536          
BLAST of EWM24990.1 vs. NCBI_GenBank
Match: gi|570328048|gb|ETO75996.1| (hypothetical protein F444_08524 [Phytophthora parasitica P1976])

HSP 1 Score: 216.468 bits (550), Expect = 9.509e-57
Identity = 168/590 (28.47%), Postives = 271/590 (45.93%), Query Frame = 0
Query:   46 AKIATKQSRKDAKVATPPLTAVSGAGYGRQVGPLIASAGDHKSQPDKPAFPSVHRTFLPDPAVQSTGASKPSTVSLVPTQDDKPEAVARCLETQVHALLEASAFASRSGQLGLALNKAKEAQKKERALTRARESSNLVDAMNGELTYAVALHLGSMYEGNGMEDEALHVYRGLLEQRALLPPVAGWARLNMGNVYYRKGRYAEAVKMYRMTLDQIPSTSHKAM----RLKVYRNIGYAFVRLQEWQEAVQALEIIVLNPITHLNGERAGTAGEDGMGGALVGSQGGGQGAGGNKAGLSRSQADPTIVLPSSAAFSTSLLGSPRTVVFGDYFRTAYLLLMCYLVLGEVVKMKRAFAKMVSTLPTP--LEEDEDIEEEAAAEKEGGARQVCGPGGGVERDDEMELWEAAAGGRRTRKRETENTARDAEEQVKPDFLREEMQRRRQEGVRYVLAAGKLLAPVVEATGGRDGYQWVVEALKRGNHGEVACLMELERASACVREKRFDPAVEILRSFERKEIPVKAWAASSLSFVYFLEGELEKAEELANLAVEHNSYNASALVNKANCVFQRGDVGAAKDLYLEALGVEAGCLE 629
            +++ T Q   DA+    P+T+VSGAG+                    P      R F P    +  GA+     +LV   ++ P+ VA+ LE  V+AL+E SA      Q   AL+ AK+A +KERA  +  E + L D +N +LTYAV                                        N+ N Y+  G + EA++ Y       P   +K      RL+V  N+G  +   Q++  A++   +  L+ I + + E       + +GGA +   G  Q A      +    AD                           F++ + L++CY  +GE  KM+R F  ++ T+P     EEDED                                E+          +T  ++++    +K D L+ E++ RR++ + Y+L A KL AP ++      G+ WV++ALK+ NH  +A  ME+ +A   ++EK FD A+E+L++FE+K+   KA AA++LS++YF+EG+  +A++ A+LAV H  YNA ALVNK NC++ + +   AK+L+LEA+GVEA C+E
Sbjct:   81 SRMGTAQQSSDAR----PMTSVSGAGFS-----------------SNPRSAGGQRMFDPMGESRKAGAAP----ALVEKTENSPKEVAKELERTVNALIEQSAELIAKEQYEEALHSAKDAGRKERAFNKHCELNGLADMLNIDLTYAVFF--------------------------------------NLANAYHLNGLWKEAIQSY------TPIVKNKQYAQGGRLRV--NMGNIYFEQQQYPTAIRMYRM-ALDQIPNTSKEVRYKIKRN-IGGAQI-KLGHYQDAAATFEDIMEGNAD---------------------------FQSGFNLIICYYAIGEHEKMRRGFTNLI-TIPMEGMSEEDED--------------------------------ESGLANESKHNDDTHTSSKEHLHSLKTDGLKAEIRARRKKAMEYILVAAKLCAPALDKKDWLAGFTWVIDALKQENHESLASEMEICKAHWFLKEKEFDKAIEVLKAFEKKDPAHKAMAATNLSYLYFVEGDTAQADKYASLAVRHQRYNAKALVNKGNCLYVKNECERAKELFLEAIGVEADCIE 536          
BLAST of EWM24990.1 vs. NCBI_GenBank
Match: gi|566024414|gb|ETI47325.1| (hypothetical protein F443_08467 [Phytophthora parasitica P1569] >gi|568050069|gb|ETM47029.1| hypothetical protein L914_08187 [Phytophthora parasitica])

HSP 1 Score: 216.468 bits (550), Expect = 1.018e-56
Identity = 168/590 (28.47%), Postives = 271/590 (45.93%), Query Frame = 0
Query:   46 AKIATKQSRKDAKVATPPLTAVSGAGYGRQVGPLIASAGDHKSQPDKPAFPSVHRTFLPDPAVQSTGASKPSTVSLVPTQDDKPEAVARCLETQVHALLEASAFASRSGQLGLALNKAKEAQKKERALTRARESSNLVDAMNGELTYAVALHLGSMYEGNGMEDEALHVYRGLLEQRALLPPVAGWARLNMGNVYYRKGRYAEAVKMYRMTLDQIPSTSHKAM----RLKVYRNIGYAFVRLQEWQEAVQALEIIVLNPITHLNGERAGTAGEDGMGGALVGSQGGGQGAGGNKAGLSRSQADPTIVLPSSAAFSTSLLGSPRTVVFGDYFRTAYLLLMCYLVLGEVVKMKRAFAKMVSTLPTP--LEEDEDIEEEAAAEKEGGARQVCGPGGGVERDDEMELWEAAAGGRRTRKRETENTARDAEEQVKPDFLREEMQRRRQEGVRYVLAAGKLLAPVVEATGGRDGYQWVVEALKRGNHGEVACLMELERASACVREKRFDPAVEILRSFERKEIPVKAWAASSLSFVYFLEGELEKAEELANLAVEHNSYNASALVNKANCVFQRGDVGAAKDLYLEALGVEAGCLE 629
            +++ T Q   DA+    P+T+VSGAG+                    P      R F P    +  GA+     +LV   ++ P+ VA+ LE  V+AL+E SA      Q   AL+ AK+A +KERA  +  E + L D +N +LTYAV                                        N+ N Y+  G + EA++ Y       P   +K      RL+V  N+G  +   Q++  A++   +  L+ I + + E       + +GGA +   G  Q A      +    AD                           F++ + L++CY  +GE  KM+R F  ++ T+P     EEDED                                E+          +T  ++++    +K D L+ E++ RR++ + Y+L A KL AP ++      G+ WV++ALK+ NH  +A  ME+ +A   ++EK FD A+E+L++FE+K+   KA AA++LS++YF+EG+  +A++ A+LAV H  YNA ALVNK NC++ + +   AK+L+LEA+GVEA C+E
Sbjct:   81 SRMGTAQQSSDAR----PMTSVSGAGFS-----------------SNPRTAGGQRMFDPMGESRKAGAAP----ALVEKTENSPKEVAKELERTVNALIEQSAELIAKEQYEEALHSAKDAGRKERAFNKHCELNGLADMLNIDLTYAVFF--------------------------------------NLANAYHLNGLWKEAIQSY------TPIVKNKQYAQGGRLRV--NMGNIYFEQQQYPTAIRMYRM-ALDQIPNTSKEVRYKIKRN-IGGAQI-KLGHYQDAAATFEDIMEGNAD---------------------------FQSGFNLIICYYAIGEHEKMRRGFTNLI-TIPMEGMSEEDED--------------------------------ESGLANESKHNDDTHTSSKEHLHSLKTDGLKAEIRARRKKAMEYILVAAKLCAPALDKKDWLAGFTWVIDALKQENHESLASEMEICKAHWFLKEKEFDKAIEVLKAFEKKDPAHKAMAATNLSYLYFVEGDTAQADKYASLAVRHQRYNAKALVNKGNCLYVKNECERAKELFLEAIGVEADCIE 536          
BLAST of EWM24990.1 vs. NCBI_GenBank
Match: gi|568019653|gb|ETL93796.1| (hypothetical protein L917_08122 [Phytophthora parasitica])

HSP 1 Score: 216.083 bits (549), Expect = 1.676e-56
Identity = 168/590 (28.47%), Postives = 271/590 (45.93%), Query Frame = 0
Query:   46 AKIATKQSRKDAKVATPPLTAVSGAGYGRQVGPLIASAGDHKSQPDKPAFPSVHRTFLPDPAVQSTGASKPSTVSLVPTQDDKPEAVARCLETQVHALLEASAFASRSGQLGLALNKAKEAQKKERALTRARESSNLVDAMNGELTYAVALHLGSMYEGNGMEDEALHVYRGLLEQRALLPPVAGWARLNMGNVYYRKGRYAEAVKMYRMTLDQIPSTSHKAM----RLKVYRNIGYAFVRLQEWQEAVQALEIIVLNPITHLNGERAGTAGEDGMGGALVGSQGGGQGAGGNKAGLSRSQADPTIVLPSSAAFSTSLLGSPRTVVFGDYFRTAYLLLMCYLVLGEVVKMKRAFAKMVSTLPTP--LEEDEDIEEEAAAEKEGGARQVCGPGGGVERDDEMELWEAAAGGRRTRKRETENTARDAEEQVKPDFLREEMQRRRQEGVRYVLAAGKLLAPVVEATGGRDGYQWVVEALKRGNHGEVACLMELERASACVREKRFDPAVEILRSFERKEIPVKAWAASSLSFVYFLEGELEKAEELANLAVEHNSYNASALVNKANCVFQRGDVGAAKDLYLEALGVEAGCLE 629
            +++ T Q   DA+    P+T+VSGAG+                    P      R F P    +  GA+     +LV   ++ P+ VA+ LE  V+AL+E SA      Q   AL+ AK+A +KERA  +  E + L D +N +LTYAV                                        N+ N Y+  G + EA++ Y       P   +K      RL+V  N+G  +   Q++  A++   +  L+ I + + E       + +GGA +   G  Q A      +    AD                           F++ + L++CY  +GE  KM+R F  ++ T+P     EEDED                                E+          +T  ++++    +K D L+ E++ RR++ + Y+L A KL AP ++      G+ WV++ALK+ NH  +A  ME+ +A   ++EK FD A+E+L++FE+K+   KA AA++LS++YF+EG+  +A++ A+LAV H  YNA ALVNK NC++ + +   AK+L+LEA+GVEA C+E
Sbjct:   81 SRMGTAQQSSDAR----PMTSVSGAGFS-----------------SNPRTAGGQRMFDPMGESRKAGAAP----ALVEKTENSPKEVAKELERTVNALIEQSAELIAKEQYEEALHSAKDAGRKERAFNKHCELNGLADMLNIDLTYAVFF--------------------------------------NLANAYHLNGLWKEAIQSY------TPIVKNKQYAQGGRLRV--NMGNIYFEQQQYPTAIRMYRM-ALDQIPNTSKEVRYKIKRN-IGGAQI-KLGHYQDAAATFEDIMEGNAD---------------------------FQSGFNLIICYYAIGEHEKMRRGFTNLI-TIPMEGMSEEDED--------------------------------ESGLTNESKHNDDTHTSSKEHLHSLKTDGLKAEIRARRKKAMEYILVAAKLCAPALDKKDWLAGFTWVIDALKQENHESLASEMEICKAHWFLKEKEFDKAIEVLKAFEKKDPAHKAMAATNLSYLYFVEGDTAQADKYASLAVRHQRYNAKALVNKGNCLYVKNECERAKELFLEAIGVEADCIE 536          
BLAST of EWM24990.1 vs. NCBI_GenBank
Match: gi|325179518|emb|CCA13915.1| (Intraflagellar Transport Protein 88 putative [Albugo laibachii Nc14])

HSP 1 Score: 215.312 bits (547), Expect = 2.636e-56
Identity = 186/632 (29.43%), Postives = 284/632 (44.94%), Query Frame = 0
Query:   23 PPPSGAPPLHSAAYRASR----------RGPTE-------AKIATKQSRKDAKVATPPLTAVSGAGYGRQVGPLIASAGDHKSQPDKPAFPSVHRTFLPDPAVQSTGASKPSTVSLV--PTQDDKPEAVARCLETQVHALLEASAFASRSGQLGLALNKAKEAQKKERALTRARESSNLVDAMNGELTYAVALHLGSMYEGNGMEDEALHVYRGLLEQRALLPPVAGWARLNMGNVYYRKGRYAEAVKMYRMTLDQIPSTSHKAMRLKVYRNIGYAFVRLQEWQEAVQALEIIVLNPITHLNGERAGTAGE------DGMGGALVGSQGGGQGAGGNKAGLSRSQADPTIVLPSSAAFSTSLLGSPRTVVFGDYFRTAYLLLMCYLVLGEVVKMKRAFAKMVSTLPTPLEEDEDIEEEAAAEKEGGARQVCGPGGGVERDDEMELWEAAAGGRRTRKRETENTARDAEEQVKPDFLREEMQRRRQEGVRYVLAAGKLLAPVVEATGGRDGYQWVVEALKRGNHGEVACLMELERASACVREKRFDPAVEILRSFERKEIPVKAWAASSLSFVYFLEGELEKAEELANLAVEHNSYNASALVNKANCVFQRGDVGAAKDLYLEALGVEAGCLE 629
            PP +G  P +  +Y +SR          RGPT        +++ T   R        P+T+VSGAG+                   KP   S  R F P       G S+ S VSL      ++ P+ VA+ +E  VH+L+E SA A +  +   AL+ AK+A +KER  T+  E+ NL D  N ELT+AV   L + +  NGM                                      + EA++ Y   +     T+  A RL+V  N+G  +   Q++  A++   +  L+ I        GT+ E        +G A +   G  Q A      +  S AD                           F+  + L++CY  +GE  KM+R F+ ++S           I  +  + +E    Q       +       L +A++GG                   K D L+ E++ RR++   Y+L A KL AP ++      GY W+++ALK+ NH  +A  ME+ +A   +REK FD A+E+L++FE+K+   KA AA++LSF+YF+EG+  +A++ A +AV H  YNA ALVNKANC+  + D   AK+LYLEA+GVEA C+E
Sbjct:   30 PPQTGEYPSY-GSYPSSRGGFNTPGTGYRGPTSMGRQGLASRLGTGSQR--GMDGARPMTSVSGAGFS-----------------SKPKTASGQRAFDP------LGDSRKSGVSLALRENNENSPKEVAKEMENGVHSLIEQSANAIQGHKYEEALHLAKDAGRKERQFTKYCETQNLSDLFNVELTFAVFFILANAFHLNGM--------------------------------------WKEAIQSYTSIVKNKQYTN--AGRLRV--NMGNIYFEEQQYPTAIRMYRM-ALDQI-------PGTSKEIRYRIKRNIGAAQI-KLGHYQDAASTFEDIMESNAD---------------------------FQAGFNLIVCYYAIGEHDKMRRGFSSLIS-----------IPMDTMSAEEEEEDQEQKTQLLLNSLSSESLTKASSGG----------------ALAKADGLKAEIRSRRKKATDYILVASKLCAPALDKKDWLAGYNWIIDALKQENHESLASEMEICKAHFFLREKDFDKAIEVLKAFEKKDAVHKAMAATNLSFLYFIEGDWSQADKYATMAVRHQRYNAKALVNKANCLCVKNDCERAKELYLEAIGVEADCIE 530          
BLAST of EWM24990.1 vs. NCBI_GenBank
Match: gi|970616492|gb|KUF64658.1| (Intraflagellar Transport Protein 88 [Phytophthora nicotianae])

HSP 1 Score: 215.312 bits (547), Expect = 3.280e-56
Identity = 168/590 (28.47%), Postives = 270/590 (45.76%), Query Frame = 0
Query:   46 AKIATKQSRKDAKVATPPLTAVSGAGYGRQVGPLIASAGDHKSQPDKPAFPSVHRTFLPDPAVQSTGASKPSTVSLVPTQDDKPEAVARCLETQVHALLEASAFASRSGQLGLALNKAKEAQKKERALTRARESSNLVDAMNGELTYAVALHLGSMYEGNGMEDEALHVYRGLLEQRALLPPVAGWARLNMGNVYYRKGRYAEAVKMYRMTLDQIPSTSHKAM----RLKVYRNIGYAFVRLQEWQEAVQALEIIVLNPITHLNGERAGTAGEDGMGGALVGSQGGGQGAGGNKAGLSRSQADPTIVLPSSAAFSTSLLGSPRTVVFGDYFRTAYLLLMCYLVLGEVVKMKRAFAKMVSTLPTP--LEEDEDIEEEAAAEKEGGARQVCGPGGGVERDDEMELWEAAAGGRRTRKRETENTARDAEEQVKPDFLREEMQRRRQEGVRYVLAAGKLLAPVVEATGGRDGYQWVVEALKRGNHGEVACLMELERASACVREKRFDPAVEILRSFERKEIPVKAWAASSLSFVYFLEGELEKAEELANLAVEHNSYNASALVNKANCVFQRGDVGAAKDLYLEALGVEAGCLE 629
            +++ T Q   DA+    P+T+VSGAG+                    P      R F P    +  GA+     +LV   ++ P+ VA+ LE  V+AL+E SA      Q   AL+ AK+A +KERA  +  E + L D +N +LTYAV                                        N+ N Y   G + EA++ Y       P   +K      RL+V  N+G  +   Q++  A++   +  L+ I + + E       + +GGA +   G  Q A      +    AD                           F++ + L++CY  +GE  KM+R F  ++ T+P     EEDED                                E+          +T  ++++    +K D L+ E++ RR++ + Y+L A KL AP ++      G+ WV++ALK+ NH  +A  ME+ +A   ++EK FD A+E+L++FE+K+   KA AA++LS++YF+EG+  +A++ A+LAV H  YNA ALVNK NC++ + +   AK+L+LEA+GVEA C+E
Sbjct:   81 SRMGTAQQSSDAR----PMTSVSGAGFS-----------------SNPRTAGGQRMFDPMGESRKAGAAP----ALVEKTENSPKEVAKELERTVNALIEQSAELIAKEQYEEALHSAKDAGRKERAFNKHCELNGLADMLNIDLTYAVFF--------------------------------------NLANAYXLNGLWKEAIQSY------TPIVKNKQYAQGGRLRV--NMGNIYFEQQQYPTAIRMYRM-ALDQIPNTSKEVRYKIKRN-IGGAQI-KLGHYQDAAATFEDIMEGNAD---------------------------FQSGFNLIICYYAIGEHEKMRRGFTNLI-TIPMEGMSEEDED--------------------------------ESGLANESKHNDDTHTSSKEHLHSLKTDGLKAEIRARRKKAMEYILVAAKLCAPALDKKDWLAGFTWVIDALKQENHESLASEMEICKAHWFLKEKEFDKAIEVLKAFEKKDPAHKAMAATNLSYLYFVEGDTAQADKYASLAVRHQRYNAKALVNKGNCLYVKNECERAKELFLEAIGVEADCIE 536          
BLAST of EWM24990.1 vs. NCBI_GenBank
Match: gi|675192755|ref|XP_008905262.1| (hypothetical protein PPTG_11826 [Phytophthora parasitica INRA-310] >gi|568094653|gb|ETN09429.1| hypothetical protein PPTG_11826 [Phytophthora parasitica INRA-310])

HSP 1 Score: 214.927 bits (546), Expect = 3.771e-56
Identity = 167/590 (28.31%), Postives = 271/590 (45.93%), Query Frame = 0
Query:   46 AKIATKQSRKDAKVATPPLTAVSGAGYGRQVGPLIASAGDHKSQPDKPAFPSVHRTFLPDPAVQSTGASKPSTVSLVPTQDDKPEAVARCLETQVHALLEASAFASRSGQLGLALNKAKEAQKKERALTRARESSNLVDAMNGELTYAVALHLGSMYEGNGMEDEALHVYRGLLEQRALLPPVAGWARLNMGNVYYRKGRYAEAVKMYRMTLDQIPSTSHKAM----RLKVYRNIGYAFVRLQEWQEAVQALEIIVLNPITHLNGERAGTAGEDGMGGALVGSQGGGQGAGGNKAGLSRSQADPTIVLPSSAAFSTSLLGSPRTVVFGDYFRTAYLLLMCYLVLGEVVKMKRAFAKMVSTLPTP--LEEDEDIEEEAAAEKEGGARQVCGPGGGVERDDEMELWEAAAGGRRTRKRETENTARDAEEQVKPDFLREEMQRRRQEGVRYVLAAGKLLAPVVEATGGRDGYQWVVEALKRGNHGEVACLMELERASACVREKRFDPAVEILRSFERKEIPVKAWAASSLSFVYFLEGELEKAEELANLAVEHNSYNASALVNKANCVFQRGDVGAAKDLYLEALGVEAGCLE 629
            +++ T Q   DA+    P+T+VSGAG+                    P      R F P    +  GA+     +LV   ++ P+ VA+ LE  V+AL+E SA      Q   AL+ AK+A +KERA  +  E + L D +N +LTYAV                                        N+ N Y+  G + EA++ Y       P   +K      RL+V  N+G  +   Q++  A++   +  L+ I + + E       + +GGA +   G  Q A      +    AD                           F++ + L++CY  +GE  KM+R F  ++ T+P     EEDED                                E+          +T  ++++    +K D L+ E++ RR++ + Y+L A KL AP ++      G+ WV++ALK+ +H  +A  ME+ +A   ++EK FD A+E+L++FE+K+   KA AA++LS++YF+EG+  +A++ A+LAV H  YNA ALVNK NC++ + +   AK+L+LEA+GVEA C+E
Sbjct:   81 SRMGTAQQSSDAR----PMTSVSGAGFS-----------------SNPRTAGGQRMFDPMGESRKAGAAP----ALVEKTENSPKEVAKELERTVNALIEQSAELIAKEQYEEALHSAKDAGRKERAFNKHCELNGLADMLNIDLTYAVFF--------------------------------------NLANAYHLNGLWKEAIQSY------TPIVKNKQYAQGGRLRV--NMGNIYFEQQQYPTAIRMYRM-ALDQIPNTSKEVRYKIKRN-IGGAQI-KLGHYQDAAATFEDIMEGNAD---------------------------FQSGFNLIICYYAIGEHEKMRRGFTNLI-TIPMEGMSEEDED--------------------------------ESGLANESKHNDDTHTSSKEHLHSLKTDGLKAEIRARRKKAMEYILVAAKLCAPALDKKDWLAGFTWVIDALKQESHESLASEMEICKAHWFLKEKEFDKAIEVLKAFEKKDPAHKAMAATNLSYLYFVEGDTAQADKYASLAVRHQRYNAKALVNKGNCLYVKNECERAKELFLEAIGVEADCIE 536          
The following BLAST results are available for this feature:
BLAST of EWM24990.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106622|gb|EWM24989.1|0.000e+0100.00intraflagellar transport protein 88 [Nannochlorops... [more]
gi|553190484|ref|XP_005855201.1|1.216e-7699.17intraflagellar transport 88-like protein, partial ... [more]
gi|676388029|ref|XP_009037293.1|2.124e-5832.39hypothetical protein AURANDRAFT_10223, partial [Au... [more]
gi|567961687|gb|ETK87224.1|8.132e-5728.47hypothetical protein L915_08299 [Phytophthora para... [more]
gi|570328048|gb|ETO75996.1|9.509e-5728.47hypothetical protein F444_08524 [Phytophthora para... [more]
gi|566024414|gb|ETI47325.1|1.018e-5628.47hypothetical protein F443_08467 [Phytophthora para... [more]
gi|568019653|gb|ETL93796.1|1.676e-5628.47hypothetical protein L917_08122 [Phytophthora para... [more]
gi|325179518|emb|CCA13915.1|2.636e-5629.43Intraflagellar Transport Protein 88 putative [Albu... [more]
gi|970616492|gb|KUF64658.1|3.280e-5628.47Intraflagellar Transport Protein 88 [Phytophthora ... [more]
gi|675192755|ref|XP_008905262.1|3.771e-5628.31hypothetical protein PPTG_11826 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5706rna5706Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications