rna5703, rna5703 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5703
Unique Name	rna5703
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	762
Alignment location	CM002466.1:625473..628169 +

Link to JBrowse

Properties


Property Name	Value
Product	chaperonin
Orig transcript id	gnl\|cribi\|Naga_100122g10.3564.mrna
Orig protein id	gnl\|cribi\|Naga_100122g10.3564
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:625473..628169 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100122g10	gene5510	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5703	rna5703-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM24977.1	cds5688	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:625473..628169+
coding sequence from alignment at CM002466.1:625473..628169+

mRNA sequence

>rna5703 ID=rna5703|Name=rna5703|organism=Nannochloropsis gaditana|type=mRNA|length=762bp
ATGCCCGCCGCCCTAGCTCTACGTGCCTGCGTATTTGTATGCCTCCCATT
TTTGCTCGGCGCATTCGTGCTACCCCTTTTTCCTGGCCAGAAGACCTCCT
TTTCTGCCCGCAGCAGTTTTCCCAAGACTATGACTCGAGCACATAATCTG
GATGGTCAAGAGATTCCAGGCCCCTTGGAGCCCCTGGCAAACGTGTTGCT
TGTCAAGGTCAAGGACGCTGAAGACATGTCAGCAGGTGGAATCGTCCTGC
CCGACCAGGCGAAGGAGAAGCCAACCGAGGGCGAGGTAGTGGCAGCAGGC
CCAGGTCGTCAGCATCCAGAAACGGCGGTCCTTATGCCCATGCCGGTCAA
ACCTGGGAGTAAAGTTCTATACGGGAAGTTCGACGGCATGTCTGTGATCT
ACGACGGAGCACCTCATGTCCTCATCCGCGACGACGACATCCTCTTGACC
TGGACGGGCTCCTCGATGACGCTCGATGCGGTGGAGACGGTGCGTGACAG
GATCTTGGTCAAGGTCAAAAAAGCCCAGGAGAAGAGCGCTGGGGGCATTC
TGCTGGCGCCGTCCATGACTAAAGCGCGACCGACGGAGGGAGAAGTGATC
AAGGTGGGCCCAGGCAGGATTGCCTCAACGGGGGAGGTCGCCGACGTGAA
GGTCAAGCCAGGAGACGGTGTTAAATTCAAGGACTTTGCTGGCACGGAAA
TCAAGATTCAAGATGAGAACTACCTGGTCATGTACTCGGTGGATGTACTC
GCGCGTTGGTAG

protein sequence of rna5703

>rna5703-protein ID=rna5703-protein|Name=rna5703|organism=Nannochloropsis gaditana|type=polypeptide|length=606bp
MNDFCRRLQQFQEAMKRGVSMVVMATLLVSTSAFLAPAALPELSKTRSVA
ARRGSLTTTMMAKNVRLSEKSRQKLVEGINIVANAVKVTLGPKGRNVVLE
RKYGVPEIVNDGVTIARDIELSDPEQNVGVKLVQEVATKSDMKAGDGTTT
STVMTQAIVNQGMRQVTAGANPVALRRGIQHTAKILCDTVKQMAKPVESN
KDLFDIATVATGGNAEMGAVIAKAFELVGDSGSTVVEESQTVQDEVEFTE
GLSIDRGYVSPYFVKDQERQLVELRKPRVLVTEGKISAVHEILPLLEHIA
KSKEPLFIVAEDVSGEALSALVVNKMRGVLDVVAIKAPGFGDRRKQLLQD
IAVATGATFVAEEVGVTLESVTPEMLGVAEKVVVGKDTTTIVTNSNYAEA
IKERILAIRREMDLMDSKFDKEKAQQRVAALGGGIARIKVGAATETELKD
KKLRYEDALNSVKSAIEMGVVPGGGSTLLYMLKKREEILAGMDDDDEKAG
ADIVFRSLSAPVMQIAENAGIDGGIVVERIFENQEWGWGYNAASGVYENL
LNTGVVDSAKVVINALENSASIASMVLTTECLITEIPERKSLDQAAQDFD
GGGQYM

mRNA from alignment at CM002466.1:625473..628169+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5703 ID=rna5703|Name=rna5703|organism=Nannochloropsis gaditana|type=mRNA|length=2697bp|location=Sequence derived from alignment at CM002466.1:625473..628169+ (Nannochloropsis gaditana)
TTTTTGGACAATCAAGCGCTTTAATACGGTTTTGGTCTTTGTTTGGACTC
TCTCTATCCGTTCATCGACCTGAAAAGTCCTGTATGCCACCCAGGCGTGG
CCTATGTTCTGCTTGACTTTTTGTGGACGGTAACCTAAAGATACTAGTAC
GTGCGGTTCCGAGGCTTCTCAAGGCAGCTATGTCCTGCTTGTCTATTGCA
ACTCAGCATTAATGCACCTCAGTGTCCTGAAATCGATCTCACAAGCGTAA
TTAGATTCTAAAGAGACCACTATACTACAAACTTAGCTGGTCTGAAGCGT
TTGGTCTCTGTTGTTGATCAATttgttttcccctccatcctaAGCCTTTC
CTCTCACTTTGCGGTCTCCATGTTTCCATACCATGAACGATTTTTGCAGA
AGACTTCAGCAGTTTCAGGAAGCTATGAAGCGGGGCGTCTCTATGGTCGT
TATGGCCACTTTGCTTGTAAGCACGAGCGCATTTCTCGCTCCTGGTAAGA
ACAACTTTACGCTATCCTCCTTAGTTGGTTTCCAGAAGCCAATACATGAA
GTTGTGTGCGTTACTAATTTTTTACCCTTTCCTTCGGGAAAcatgcctcc
ccccgcttcaAAGCTGCTTTACCCGAGCTGTCAAAGACTCGTAGTGTGGC
TGCTAGGCGGGGGTCACTAACCACGACGATGATGGCCAAGAACGTCCGTC
TGAGTGAAAAGAGTCGGcagaagctggtggagggtaTTAACATCGTGGCC
AACGCCGTGAAGGTGACCTTGGGGCCAAAAGGCCGCAACGTGGTATTGGA
GCGGAAGTATGGCGTGCCAGAGATTGTGAACGACGGCGTGACGATAGCAC
GGGACATCGAATTGTCAGACCCAGAGCAGAACGTGGGGGTGAAGCTGGTG
CAAGAGGTGGCGACCAAGTCGGATATGAAGGCCGGCGACGggaccaccac
ctccaccgtcaTGACCCAAGCCATCGTCAACCAAGGCATGCGTCAGGTGA
CGGCGGGTGCGAATCCAGTGGCCCTTCGGCGGGGCATCCAGCACACGGCC
AAAATCCTCTGCGATACGGTCAAGCAAATGGCCAAACCTGTGGAGAGCAA
CAAGGACCTGTTCGACATTGCCACGGTGGCGACGGGCGGGAATGCAGAGA
TGGGCGCAGTGATTGCCAAGGCGTTTGAGCTTGTGGGGGACAGCGGCTcg
acggtggtggaggaatcGCAGACGGTgcaggacgaggtggagtTCACGGA
GGGCCTGAGCATTGACCGGGGCTATGTCTCCCCGTACTTCGTCAAAGACC
AGGAGCGACAACTGGTGGAGCTCCGCAAACCCCGAGTCTTGGtcacggag
ggaaagatctCGGCCGTGCACGAGATCCTCCCCTTGCTGGAGCACATCgc
caagagcaaggagcCGCTCTTCATCGTGGCAGAGGACGTGTCTGGGGAGG
CACTAAGCGCGCTGGTTGTGAACAAAATGCGGGGCgtgctggacgtggtg
gcGATCAAGGCTCCTGGGTTCGGGGATCGGCGCAAGCAGCTGCTCCAGGA
CATTGCCGTGGCCACGGGCGCGACTTTTGtcgcggaggaagtgggTGTGA
CCTTGGAGAGCGTGACGCCGGAAATGCTCGGGGTAgcggagaaggtggtg
gtggggaaagacACGACCACCATCGTCACCAACAGCAACTACGCGGAGGC
GATCAAGGAGCGCATTCTCGCCATCCGTCGGGAGATGGACCTTATGGACA
GTAAATTTGACAAAGAGAAAGCGCAACAGCGTGTTGCCGCCCTGGGTGGG
GGGATTGCGAGGATCAAGGTTGGGGCAGCGACAGAGACGGAGCTGAAGGA
CAAGAAGTTGCGTTACGAAGATGCCTTGAACTCGGTCAAGTCGGCCATCG
AAATGGGTGTCGTGCCCGGCGGCGGGTCCACATTGCTCTACATGCTGAAG
AAACGCGAGGAGATCTTGGCGGGCatggacgacgacgatgagaAGGCGGG
CGCAGATATCGTTTTCCGTTCCCTCTCGGCGCCGGTCATGCAAATCGCTG
AAAATGCTGGGATCGATGGCGGGATCGTTGTGGAACGCATCTTCGAGAAC
CAAGAGTGGGGCTGGGGCTACAATGCCGCCAGTGGGGTGTACGAGAATCT
CCTCAACACAGGAGTGGTGGACTCGGCGAAAGTAGTCATCAACGCCCTGG
AGAATTCGGCGTCGATCGCCTCCATGGTCTTGACGACCGAGTGCTTGATT
ACAGAAATTCCTGAGCGGAAGTCTCTCGATCAGGCGGCGCAGGATTTcga
cggtggaggacagTACATGTAAGGGTGACCAAACAGAGAAACGAAGAGGG
TGAGGTAAAAAGGACGCTTAAATGCATGTCGAAGGGTGATGGCTCCGGGG
CCTcagaaaaaagaggaatcGTGGCGCCTCTGCGGCTCTGAACGTGAGGT
AGACGGGTAGTTCGAACCGGGGGAGCGAAATGAGGGAATGTAGGGTTGAA
AGGCCAAGGCGGAAAAATTCTGCTTGCGTTTATTTTTTACACTTGCAAGG
GCCGCGTACAGACGGGCAGTCCGGGGACCAGGATTTAGGAGACAAGAGCT
TGTGGACAGGTCGAAGCACGCGATATAACACATACAGAGGAATCCATACT
GCTCTCTGCAGCACAAAGAAACAAGCCAAAAGATAGCGGATTTTTTG

Coding sequence (CDS) from alignment at CM002466.1:625473..628169+

>rna5703 ID=rna5703|Name=rna5703|organism=Nannochloropsis gaditana|type=CDS|length=3642bp|location=Sequence derived from alignment at CM002466.1:625473..628169+ (Nannochloropsis gaditana)
ATGAACGATTTTTGCAGAAGACTTCAGCAGTTTCAGGAAGCTATGAAGCG
GGGCGTCTCTATGGTCGTTATGGCCACTTTGCTTGTAAGCACGAGCGCAT
TTCTCGCTCCTGCTGCTTTACCCGAGCTGTCAAAGACTCGTAGTGTGGCT
GCTAGGCGGGGGTCACTAACCACGACGATGATGGCCAAGAACGTCCGTCT
GAGTGAAAAGAGTCGGcagaagctggtggagggtaTTAACATCGTGGCCA
ACGCCGTGAAGGTGACCTTGGGGCCAAAAGGCCGCAACGTGGTATTGGAG
CGGAAGTATGGCGTGCCAGAGATTGTGAACGACGGCGTGACGATAGCACG
GGACATCGAATTGTCAGACCCAGAGCAGAACGTGGGGGTGAAGCTGGTGC
AAGAGGTGGCGACCAAGTCGGATATGAAGGCCGGCGACGggaccaccacc
tccaccgtcaTGACCCAAGCCATCGTCAACCAAGGCATGCGTCAGGTGAC
GGCGGGTGCGAATCCAGTGGCCCTTCGGCGGGGCATCCAGCACACGGCCA
AAATCCTCTGCGATACGGTCAAGCAAATGGCCAAACCTGTGGAGAGCAAC
AAGGACCTGTTCGACATTGCCACGGTGGCGACGGGCGGGAATGCAGAGAT
GGGCGCAGTGATTGCCAAGGCGTTTGAGCTTGTGGGGGACAGCGGCTcga
cggtggtggaggaatcGCAGACGGTgcaggacgaggtggagtTCACGGAG
GGCCTGAGCATTGACCGGGGCTATGTCTCCCCGTACTTCGTCAAAGACCA
GGAGCGACAACTGGTGGAGCTCCGCAAACCCCGAGTCTTGGtcacggagg
gaaagatctCGGCCGTGCACGAGATCCTCCCCTTGCTGGAGCACATCgcc
aagagcaaggagcCGCTCTTCATCGTGGCAGAGGACGTGTCTGGGGAGGC
ACTAAGCGCGCTGGTTGTGAACAAAATGCGGGGCgtgctggacgtggtgg
cGATCAAGGCTCCTGGGTTCGGGGATCGGCGCAAGCAGCTGCTCCAGGAC
ATTGCCGTGGCCACGGGCGCGACTTTTGtcgcggaggaagtgggTGTGAC
CTTGGAGAGCGTGACGCCGGAAATGCTCGGGGTAgcggagaaggtggtgg
tggggaaagacACGACCACCATCGTCACCAACAGCAACTACGCGGAGGCG
ATCAAGGAGCGCATTCTCGCCATCCGTCGGGAGATGGACCTTATGGACAG
TAAATTTGACAAAGAGAAAGCGCAACAGCGTGTTGCCGCCCTGGGTGGGG
GGATTGCGAGGATCAAGGTTGGGGCAGCGACAGAGACGGAGCTGAAGGAC
AAGAAGTTGCGTTACGAAGATGCCTTGAACTCGGTCAAGTCGGCCATCGA
AATGGGTGTCGTGCCCGGCGGCGGGTCCACATTGCTCTACATGCTGAAGA
AACGCGAGGAGATCTTGGCGGGCatggacgacgacgatgagaAGGCGGGC
GCAGATATCGTTTTCCGTTCCCTCTCGGCGCCGGTCATGCAAATCGCTGA
AAATGCTGGGATCGATGGCGGGATCGTTGTGGAACGCATCTTCGAGAACC
AAGAGTGGGGCTGGGGCTACAATGCCGCCAGTGGGGTGTACGAGAATCTC
CTCAACACAGGAGTGGTGGACTCGGCGAAAGTAGTCATCAACGCCCTGGA
GAATTCGGCGTCGATCGCCTCCATGGTCTTGACGACCGAGTGCTTGATTA
CAGAAATTCCTGAGCGGAAGTCTCTCGATCAGGCGGCGCAGGATTTcgac
ggtggaggacagTACATGTAAATGAACGATTTTTGCAGAAGACTTCAGCA
GTTTCAGGAAGCTATGAAGCGGGGCGTCTCTATGGTCGTTATGGCCACTT
TGCTTGTAAGCACGAGCGCATTTCTCGCTCCTGCTGCTTTACCCGAGCTG
TCAAAGACTCGTAGTGTGGCTGCTAGGCGGGGGTCACTAACCACGACGAT
GATGGCCAAGAACGTCCGTCTGAGTGAAAAGAGTCGGcagaagctggtgg
agggtaTTAACATCGTGGCCAACGCCGTGAAGGTGACCTTGGGGCCAAAA
GGCCGCAACGTGGTATTGGAGCGGAAGTATGGCGTGCCAGAGATTGTGAA
CGACGGCGTGACGATAGCACGGGACATCGAATTGTCAGACCCAGAGCAGA
ACGTGGGGGTGAAGCTGGTGCAAGAGGTGGCGACCAAGTCGGATATGAAG
GCCGGCGACGggaccaccacctccaccgtcaTGACCCAAGCCATCGTCAA
CCAAGGCATGCGTCAGGTGACGGCGGGTGCGAATCCAGTGGCCCTTCGGC
GGGGCATCCAGCACACGGCCAAAATCCTCTGCGATACGGTCAAGCAAATG
GCCAAACCTGTGGAGAGCAACAAGGACCTGTTCGACATTGCCACGGTGGC
GACGGGCGGGAATGCAGAGATGGGCGCAGTGATTGCCAAGGCGTTTGAGC
TTGTGGGGGACAGCGGCTcgacggtggtggaggaatcGCAGACGGTgcag
gacgaggtggagtTCACGGAGGGCCTGAGCATTGACCGGGGCTATGTCTC
CCCGTACTTCGTCAAAGACCAGGAGCGACAACTGGTGGAGCTCCGCAAAC
CCCGAGTCTTGGtcacggagggaaagatctCGGCCGTGCACGAGATCCTC
CCCTTGCTGGAGCACATCgccaagagcaaggagcCGCTCTTCATCGTGGC
AGAGGACGTGTCTGGGGAGGCACTAAGCGCGCTGGTTGTGAACAAAATGC
GGGGCgtgctggacgtggtggcGATCAAGGCTCCTGGGTTCGGGGATCGG
CGCAAGCAGCTGCTCCAGGACATTGCCGTGGCCACGGGCGCGACTTTTGt
cgcggaggaagtgggTGTGACCTTGGAGAGCGTGACGCCGGAAATGCTCG
GGGTAgcggagaaggtggtggtggggaaagacACGACCACCATCGTCACC
AACAGCAACTACGCGGAGGCGATCAAGGAGCGCATTCTCGCCATCCGTCG
GGAGATGGACCTTATGGACAGTAAATTTGACAAAGAGAAAGCGCAACAGC
GTGTTGCCGCCCTGGGTGGGGGGATTGCGAGGATCAAGGTTGGGGCAGCG
ACAGAGACGGAGCTGAAGGACAAGAAGTTGCGTTACGAAGATGCCTTGAA
CTCGGTCAAGTCGGCCATCGAAATGGGTGTCGTGCCCGGCGGCGGGTCCA
CATTGCTCTACATGCTGAAGAAACGCGAGGAGATCTTGGCGGGCatggac
gacgacgatgagaAGGCGGGCGCAGATATCGTTTTCCGTTCCCTCTCGGC
GCCGGTCATGCAAATCGCTGAAAATGCTGGGATCGATGGCGGGATCGTTG
TGGAACGCATCTTCGAGAACCAAGAGTGGGGCTGGGGCTACAATGCCGCC
AGTGGGGTGTACGAGAATCTCCTCAACACAGGAGTGGTGGACTCGGCGAA
AGTAGTCATCAACGCCCTGGAGAATTCGGCGTCGATCGCCTCCATGGTCT
TGACGACCGAGTGCTTGATTACAGAAATTCCTGAGCGGAAGTCTCTCGAT
CAGGCGGCGCAGGATTTcgacggtggaggacagTACATGTAA

Synonyms

Publications