EWM24977.1, cds5688 (CDS) Nannochloropsis gaditana

Overview
NameEWM24977.1
Unique Namecds5688
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:625855..625966 +
Alignment locationCM002466.1:626086..627794 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24977.1
Productchaperonin
Orig transcript idgnl|cribi|Naga_100122g10.3564.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:625855..625966 +
CM002466.1supercontigCM002466.1:626086..627794 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005215transporter activity
GO:0005515protein binding
GO:0000166nucleotide binding
GO:0005524ATP binding
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
GO:0016043cellular component organization
GO:0042026protein refolding
Vocabulary: Cellular Component
TermDefinition
GO:0005829cytosol
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: INTERPRO
TermDefinition
IPR027409GroEL-like_apical_dom
IPR027413GROEL-like_equatorial
IPR002423Cpn60/TCP-1
IPR001844Chaprnin_Cpn60
Homology
BLAST of EWM24977.1 vs. NCBI_GenBank
Match: gi|585106610|gb|EWM24977.1| (chaperonin [Nannochloropsis gaditana])

HSP 1 Score: 1223.38 bits (3164), Expect = 0.000e+0
Identity = 606/606 (100.00%), Postives = 606/606 (100.00%), Query Frame = 0
Query:    1 MNDFCRRLQQFQEAMKRGVSMVVMATLLVSTSAFLAPAALPELSKTRSVAARRGSLTTTMMAKNVRLSEKSRQKLVEGINIVANAVKVTLGPKGRNVVLERKYGVPEIVNDGVTIARDIELSDPEQNVGVKLVQEVATKSDMKAGDGTTTSTVMTQAIVNQGMRQVTAGANPVALRRGIQHTAKILCDTVKQMAKPVESNKDLFDIATVATGGNAEMGAVIAKAFELVGDSGSTVVEESQTVQDEVEFTEGLSIDRGYVSPYFVKDQERQLVELRKPRVLVTEGKISAVHEILPLLEHIAKSKEPLFIVAEDVSGEALSALVVNKMRGVLDVVAIKAPGFGDRRKQLLQDIAVATGATFVAEEVGVTLESVTPEMLGVAEKVVVGKDTTTIVTNSNYAEAIKERILAIRREMDLMDSKFDKEKAQQRVAALGGGIARIKVGAATETELKDKKLRYEDALNSVKSAIEMGVVPGGGSTLLYMLKKREEILAGMDDDDEKAGADIVFRSLSAPVMQIAENAGIDGGIVVERIFENQEWGWGYNAASGVYENLLNTGVVDSAKVVINALENSASIASMVLTTECLITEIPERKSLDQAAQDFDGGGQYM 606
            MNDFCRRLQQFQEAMKRGVSMVVMATLLVSTSAFLAPAALPELSKTRSVAARRGSLTTTMMAKNVRLSEKSRQKLVEGINIVANAVKVTLGPKGRNVVLERKYGVPEIVNDGVTIARDIELSDPEQNVGVKLVQEVATKSDMKAGDGTTTSTVMTQAIVNQGMRQVTAGANPVALRRGIQHTAKILCDTVKQMAKPVESNKDLFDIATVATGGNAEMGAVIAKAFELVGDSGSTVVEESQTVQDEVEFTEGLSIDRGYVSPYFVKDQERQLVELRKPRVLVTEGKISAVHEILPLLEHIAKSKEPLFIVAEDVSGEALSALVVNKMRGVLDVVAIKAPGFGDRRKQLLQDIAVATGATFVAEEVGVTLESVTPEMLGVAEKVVVGKDTTTIVTNSNYAEAIKERILAIRREMDLMDSKFDKEKAQQRVAALGGGIARIKVGAATETELKDKKLRYEDALNSVKSAIEMGVVPGGGSTLLYMLKKREEILAGMDDDDEKAGADIVFRSLSAPVMQIAENAGIDGGIVVERIFENQEWGWGYNAASGVYENLLNTGVVDSAKVVINALENSASIASMVLTTECLITEIPERKSLDQAAQDFDGGGQYM
Sbjct:    1 MNDFCRRLQQFQEAMKRGVSMVVMATLLVSTSAFLAPAALPELSKTRSVAARRGSLTTTMMAKNVRLSEKSRQKLVEGINIVANAVKVTLGPKGRNVVLERKYGVPEIVNDGVTIARDIELSDPEQNVGVKLVQEVATKSDMKAGDGTTTSTVMTQAIVNQGMRQVTAGANPVALRRGIQHTAKILCDTVKQMAKPVESNKDLFDIATVATGGNAEMGAVIAKAFELVGDSGSTVVEESQTVQDEVEFTEGLSIDRGYVSPYFVKDQERQLVELRKPRVLVTEGKISAVHEILPLLEHIAKSKEPLFIVAEDVSGEALSALVVNKMRGVLDVVAIKAPGFGDRRKQLLQDIAVATGATFVAEEVGVTLESVTPEMLGVAEKVVVGKDTTTIVTNSNYAEAIKERILAIRREMDLMDSKFDKEKAQQRVAALGGGIARIKVGAATETELKDKKLRYEDALNSVKSAIEMGVVPGGGSTLLYMLKKREEILAGMDDDDEKAGADIVFRSLSAPVMQIAENAGIDGGIVVERIFENQEWGWGYNAASGVYENLLNTGVVDSAKVVINALENSASIASMVLTTECLITEIPERKSLDQAAQDFDGGGQYM 606          
BLAST of EWM24977.1 vs. NCBI_GenBank
Match: gi|676391243|ref|XP_009038899.1| (hypothetical protein AURANDRAFT_72012 [Aureococcus anophagefferens] >gi|323450439|gb|EGB06320.1| hypothetical protein AURANDRAFT_72012 [Aureococcus anophagefferens])

HSP 1 Score: 733.791 bits (1893), Expect = 0.000e+0
Identity = 367/541 (67.84%), Postives = 447/541 (82.62%), Query Frame = 0
Query:   57 TTTMMAKNVRLSEKSRQKLVEGINIVANAVKVTLGPKGRNVVLERKYGVPEIVNDGVTIARDIELSDPEQNVGVKLVQEVATKSDMKAGDGTTTSTVMTQAIVNQGMRQVTAGANPVALRRGIQHTAKILCDTVKQMAKPVESNKDLFDIATVATGGNAEMGAVIAKAFELVGDSGSTVVEESQTVQDEVEFTEGLSIDRGYVSPYFVKDQERQLVELRKPRVLVTEGKISAVHEILPLLEHIAKSKEPLFIVAEDVSGEALSALVVNKMRGVLDVVAIKAPGFGDRRKQLLQDIAVATGATFVAEEVGVTLESVTPEMLGVAEKVVVGKDTTTIVTNSNYAEAIKERILAIRREMDLMDSKFDKEKAQQRVAALGGGIARIKVGAATETELKDKKLRYEDALNSVKSAIEMGVVPGGGSTLLYMLKKREEILAGMDDDDEKAGADIVFRSLSAPVMQIAENAGIDGGIVVERIFENQEWGWGYNAASGVYENLLNTGVVDSAKVVINALENSASIASMVLTTECLITEIP-ERKSLDQAA 596
            TT + AK V   + SR +LV GIN VA+AVKVTLGPKGRNVVLER YG PEIVNDGVTIARDIEL DP  N+G KL+QEVA+KSD KAGDGTTTST++TQ +VNQGM+ V++G NPVALRRG+      L   V  +AKPV+SN +L +IATVAT GNA MGA+IAKAFE VGD+GST +EESQT+ DEVEFTEGL+IDRGYVSPYFV DQERQL E+  P++LVT+ KI  V++++PLLE   K+KE L I+AEDV GEALSALVVNKMRGVLDVVAIKAPGFG RRK LLQDIA+ATGAT+VA+EVGV L++VTPEMLG  E++VVGK+ TTI+T+   A+A+++RI  I+ E +  DS FDKEKA++RVAALGGGIARIKVGAATETELKDKKLRYEDALN+VKSA++MG++PGGGSTL Y+L+KR+ I   MDD+DE+ GADIVF SL+APV QIA+NAG++G +V+ ++ E + +G+GYNAA+G Y +L   GVVDSA+V ++ALENSASIA +VLTTE LI EIP E   +D+ A
Sbjct:   26 TTKLEAKKVLFGDASRAQLVAGINAVADAVKVTLGPKGRNVVLERAYGAPEIVNDGVTIARDIELDDPAMNIGAKLIQEVASKSDSKAGDGTTTSTLLTQELVNQGMKAVSSGVNPVALRRGMSKATDALIVEVTALAKPVDSNDELLNIATVATSGNAVMGAIIAKAFEKVGDTGSTTMEESQTLTDEVEFTEGLTIDRGYVSPYFVNDQERQLCEMLDPKILVTDQKIENVNDLIPLLEACVKTKERLVIIAEDVVGEALSALVVNKMRGVLDVVAIKAPGFGTRRKDLLQDIAIATGATYVAQEVGVALDTVTPEMLGTCERIVVGKEETTIITDGKQADAMEKRIAQIKLEAENTDSMFDKEKAEERVAALGGGIARIKVGAATETELKDKKLRYEDALNAVKSALKMGILPGGGSTLSYLLRKRDAIAGAMDDEDERRGADIVFNSLAAPVCQIAKNAGLEGQVVLSKV-EGKPFGFGYNAATGEYCDLFEAGVVDSAQVTLSALENSASIAGLVLTTEALIHEIPVEMSEMDKLA 565          
BLAST of EWM24977.1 vs. NCBI_GenBank
Match: gi|298707119|emb|CBJ29911.1| (chaperonin cpn60 [Ectocarpus siliculosus])

HSP 1 Score: 723.391 bits (1866), Expect = 0.000e+0
Identity = 365/563 (64.83%), Postives = 458/563 (81.35%), Query Frame = 0
Query:   48 SVAARRGSLTT--TMMAKNVRLSEKSRQKLVEGINIVANAVKVTLGPKGRNVVLERKYGVPEIVNDGVTIARDIELSDPEQNVGVKLVQEVATKSDMKAGDGTTTSTVMTQAIVNQGMRQVTAGANPVALRRGIQHTAKILCDTVKQMAKPVESNKDLFDIATVATGGNAEMGAVIAKAFELVGDSGSTVVEESQTVQDEVEFTEGLSIDRGYVSPYFVKDQERQLVELRKPRVLVTEGKISAVHEILPLLEHIAKSKEPLFIVAEDVSGEALSALVVNKMRGVLDVVAIKAPGFGDRRKQLLQDIAVATGATFVAEEVGVTLESVTPEMLGVAEKVVVGKDTTTIVTNSNYAEAIKERILAIRREMDLMDSKFDKEKAQQRVAALGGGIARIKVGAATETELKDKKLRYEDALNSVKSAIEMGVVPGGGSTLLYMLKKREEILAGMDDDDEKAGADIVFRSLSAPVMQIAENAGIDGGIVVERIFENQEWGWGYNAASGVYENLLNTGVVDSAKVVINALENSASIASMVLTTECLITEIPERKSLDQAAQDFD--GGGQYM 606
            S+A RR    T  +M AK+V   E +R+KL +GIN VA+AVKVTLGPKGRNVVLER YG PEIVNDGVTIARDIE+ + E+NVGVKLVQEVA KSD +AGDGTTTST++TQ IVNQGMR VT+GANPV LR+GI   + ++ + +K++A PV  N+DL ++AT+A+G ++ MG +IAKAFE VGD+GSTVVEESQT+ DEVEFTEGL+IDRGY+SPYF+ DQER L E + P++LVT+ KI  V++++PLLE + ++KEPL I+AEDV GEALSALVVNKMRGVLDVVA+KAP FG+RRK  LQDIA+ATG+T+VAEEVG+TL+ V  EMLG A+++VV K+ TTIV++    EA+K RI  IR++ +  DS FDKEKA +RVAALGGGIARIKVGAATETELKDKKLRYEDALNSV+SA+E+G+VPGGG+ L Y+ +  EE  A ++ +D KAG  I+ RSLSAP+MQIA+NAG++GGIVV +  +N+EWG+GYNAA+  Y +LL  GV+D AKV INA+ENSAS+AS+VLTTECLI EIP + S  Q   ++D  GGG YM
Sbjct:   60 SLAGRRSRAGTALSMGAKSVVFGEDARKKLADGINAVADAVKVTLGPKGRNVVLERAYGAPEIVNDGVTIARDIEVENHEENVGVKLVQEVAQKSDNRAGDGTTTSTLLTQEIVNQGMRLVTSGANPVELRQGILAASGMIIEEIKKLAVPVGKNEDLLNVATIASG-SSTMGGIIAKAFERVGDTGSTVVEESQTLGDEVEFTEGLTIDRGYLSPYFISDQERSLCEFKNPKILVTDKKIDQVNDLIPLLEAMVQAKEPLLIMAEDVVGEALSALVVNKMRGVLDVVAVKAPSFGERRKNYLQDIAIATGSTYVAEEVGLTLDQVKIEMLGTADRIVVMKEQTTIVSDGRNDEAVKARIKTIRKDAETSDSAFDKEKADERVAALGGGIARIKVGAATETELKDKKLRYEDALNSVRSALELGIVPGGGACLQYLQRMDEEFRARVEGEDRKAGVGILMRSLSAPMMQIAKNAGVEGGIVVAKC-DNKEWGFGYNAANSEYCDLLEAGVLDPAKVTINAVENSASVASLVLTTECLIAEIPVKVSEAQQQANYDAMGGGDYM 620          
BLAST of EWM24977.1 vs. NCBI_GenBank
Match: gi|375332061|gb|AFA52570.1| (chaperonin [Vaucheria litorea])

HSP 1 Score: 721.079 bits (1860), Expect = 0.000e+0
Identity = 358/549 (65.21%), Postives = 449/549 (81.79%), Query Frame = 0
Query:   60 MMAKNVRLSEKSRQKLVEGINIVANAVKVTLGPKGRNVVLERKYGVPEIVNDGVTIARDIELSDPEQNVGVKLVQEVATKSDMKAGDGTTTSTVMTQAIVNQGMRQVTAGANPVALRRGIQHTAKILCDTVKQMAKPVESNKDLFDIATVATGGNAEMGAVIAKAFELVGDSGSTVVEESQTVQDEVEFTEGLSIDRGYVSPYFVKDQERQLVELRKPRVLVTEGKISAVHEILPLLEHIAKSKEPLFIVAEDVSGEALSALVVNKMRGVLDVVAIKAPGFGDRRKQLLQDIAVATGATFVAEEVGVTLESVTPEMLGVAEKVVVGKDTTTIVTNSNYAEAIKERILAIRREMDLMDSKFDKEKAQQRVAALGGGIARIKVGAATETELKDKKLRYEDALNSVKSAIEMGVVPGGGSTLLYMLKKREEILAGMDDDDEKAGADIVFRSLSAPVMQIAENAGIDGGIVVERIFENQEWGWGYNAASGVYENLLNTGVVDSAKVVINALENSASIASMVLTTECLITEIPERKSLDQAAQDFD--GGGQYM 606
            M AK V   E+SR+KLVEGIN VANAV+VTLGPKGRNVVLER YG PEIVNDGVTIARDI L DPE NVG +LVQEVA KSD +AGDGTTT+TVMTQAIVN G+R VT+GANPV LRRGI+  ++ L   +K+++KPV   KDL  +AT+A+G +A MG++I++AFE VG++GSTVVEESQT+ DEV+FTEGL+I+RGY+SPYFV D+ERQ+ E+ KP++LVT+ KI  V+E++PLLE + KSKEPLFIVAEDV+GEALSALVVNKMRGVLDV AIKAP FGDRRK  LQDIA+ATGAT+VAEEVG++L+ VT +MLG   ++VV K+ TTIVT+   AEA+ +RI AIR+E    D++FD+EK  +R+AALGGGIARIKVGAATETELKDKKLRYEDALNSV+SA+EMG+VPGGG+ ++Y+ + ++++ +   ++DE  GA I+F+SLSAP  QIA NAG++GG+V E+   N E+G+GYNAA   Y +L   GV+D AKV INA+ENSAS+AS+VLTTE LITEIP + +  Q  + +D  GGG YM
Sbjct:   40 MAAKKVSFGEESRKKLVEGINQVANAVRVTLGPKGRNVVLERNYGAPEIVNDGVTIARDISLEDPEHNVGARLVQEVAQKSDNRAGDGTTTATVMTQAIVNNGLRSVTSGANPVELRRGIKIASEFLIKQIKELSKPVNGIKDLNSVATIASG-SAVMGSIISQAFEKVGETGSTVVEESQTLTDEVDFTEGLTIERGYLSPYFVGDKERQVCEMLKPKILVTDRKIDQVNELIPLLESMVKSKEPLFIVAEDVTGEALSALVVNKMRGVLDVCAIKAPSFGDRRKAYLQDIAIATGATYVAEEVGISLDQVTDDMLGTCARLVVSKEGTTIVTDGAQAEAVAKRIEAIRKEKSSTDNQFDQEKCDERIAALGGGIARIKVGAATETELKDKKLRYEDALNSVRSALEMGIVPGGGACMVYLQRYQDKVCSLCANEDEVLGAGILFKSLSAPCKQIAYNAGVEGGVVWEKT-RNMEFGFGYNAAKDEYGDLFEMGVIDPAKVTINAIENSASVASLVLTTEALITEIPVKLTPQQEQEQYDEMGGGNYM 586          
BLAST of EWM24977.1 vs. NCBI_GenBank
Match: gi|224004005|ref|XP_002291674.1| (predicted protein [Thalassiosira pseudonana CCMP1335] >gi|220973450|gb|EED91781.1| predicted protein [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 707.983 bits (1826), Expect = 0.000e+0
Identity = 359/596 (60.23%), Postives = 464/596 (77.85%), Query Frame = 0
Query:   15 MKRGVSMVVMATLLVSTSAFLAPAALPELSKTRSVAARRGSLTTTMMAKNVRLSEKSRQKLVEGINIVANAVKVTLGPKGRNVVLERKYGVPEIVNDGVTIARDIELSDPEQNVGVKLVQEVATKSDMKAGDGTTTSTVMTQAIVNQGMRQVTAGANPVALRRGIQHTAKILCDTVKQMAKPVESNKDLFDIATVATGGNAEMGAVIAKAFELVGDSGSTVVEESQTVQDEVEFTEGLSIDRGYVSPYFVKDQERQLVELRKPRVLVTEGKISAVHEILPLLEHIAKSKEPLFIVAEDVSGEALSALVVNKMRGVLDVVAIKAPGFGDRRKQLLQDIAVATGATFVAEEVGVTLESVTPEMLGVAEKVVVGKDTTTIVTNSNYAEAIKERILAIRREMDLMDSKFDKEKAQQRVAALGGGIARIKVGAATETELKDKKLRYEDALNSVKSAIEMGVVPGGGSTLLYMLKK-REEILAGMDDDDEKAGADIVFRSLSAPVMQIAENAGIDGGIVVERIFE---NQEWGWGYNAASGVYENLLNTGVVDSAKVVINALENSASIASMVLTTECLITEIPERKSLDQAAQDFDGGGQYM 606
            MK  V+ + M  L    SAF A         + S  A R   +T + AK V   E+SR+KLV+GIN VANAVKVTLGPKGRNVVLER YG PEIVNDGVTIAR+I L+DPE NVGV+LVQEVA+KSD KAGDGTTTST+MTQAIVN GM+ VT+G NP+AL  GI+ +A ++   +K++++ +   +DL  +AT+A+G + +MG +IA+AF+ VG++GSTV+EESQT+ DE+EFTEGL+IDRGY+SPYFVKDQERQ+ EL  PR+LVT+ KI  V+EI+PLLE + K+KEP+ ++AEDV+G+ALSALVVNKMRGVLDVVAI+APGFG RRK  LQDIA+ATGAT+VAEEVG+TL+SVT +MLG A++ V+ K+ TTIVT+    +A+  RI  I+RE +  D+ FD++KAQ+RVAALGGGIARIKVGAATETELKDKKLRYEDALNSV+SA E+G+VPGGG+ L Y+  +  +EILA  DD+D++AGA I+ +SLS P  Q+AENAG++G +V+ +I E    + +G G++A+   Y +L+  GVVD AKV INA+ENSAS+A +VLTTECL+TEIP  +S +   + FD  G  M
Sbjct:    1 MKFHVTALSMVYLASECSAFTA--------NSNSFQATRRLSSTALSAKRVSFKEESRKKLVDGINQVANAVKVTLGPKGRNVVLERNYGAPEIVNDGVTIAREISLADPECNVGVRLVQEVASKSDSKAGDGTTTSTIMTQAIVNNGMKAVTSGVNPIALNAGIKKSAGMVAAKIKELSQKINGVEDLQSVATIASG-SVDMGRIIAQAFDKVGENGSTVIEESQTLFDEIEFTEGLTIDRGYISPYFVKDQERQVAELVNPRILVTDAKIDNVNEIVPLLEQLVKTKEPVLMIAEDVTGDALSALVVNKMRGVLDVVAIRAPGFGQRRKAYLQDIAIATGATYVAEEVGITLDSVTTDMLGTADRCVIAKELTTIVTDGKQEDAVIARIAQIKREGEEADTDFDRDKAQERVAALGGGIARIKVGAATETELKDKKLRYEDALNSVQSARELGIVPGGGACLAYIQDQFTDEILAAFDDEDQRAGAAILMKSLSEPCCQVAENAGVEGAVVLSKIVELTREKGFGHGWDASKNNYCDLMEAGVVDPAKVTINAVENSASVAGLVLTTECLVTEIPVFESEEDMQRRFDAEGMGM 587          
BLAST of EWM24977.1 vs. NCBI_GenBank
Match: gi|1210532053|dbj|GAX09481.1| (chaperonin GroEL [Fistulifera solaris])

HSP 1 Score: 698.353 bits (1801), Expect = 0.000e+0
Identity = 359/585 (61.37%), Postives = 456/585 (77.95%), Query Frame = 0
Query:   20 SMVVMATLLVSTSAFLAPAALPELSKTRSVAARRGSLTTTMMAKNVRLSEKSRQKLVEGINIVANAVKVTLGPKGRNVVLERKYGVPEIVNDGVTIARDIELSDPEQNVGVKLVQEVATKSDMKAGDGTTTSTVMTQAIVNQGMRQVTAGANPVALRRGIQHTAKILCDTVKQMAKPVESNKDLFDIATVATGGNAEMGAVIAKAFELVGDSGSTVVEESQTVQDEVEFTEGLSIDRGYVSPYFVKDQERQLVELRKPRVLVTEGKISAVHEILPLLEHIAKSKEPLFIVAEDVSGEALSALVVNKMRGVLDVVAIKAPGFGDRRKQLLQDIAVATGATFVAEEVGVTLESVTPEMLGVAEKVVVGKDTTTIVTNSNYAEAIKERILAIRREMDLMDSKFDKEKAQQRVAALGGGIARIKVGAATETELKDKKLRYEDALNSVKSAIEMGVVPGGGSTLLYM-LKKREEILAGMDDDDEKAGADIVFRSLSAPVMQIAENAGIDGGIVVERIFE---NQEWGWGYNAASGVYENLLNTGVVDSAKVVINALENSASIASMVLTTECLITEIPERKSLDQAAQDFD 600
            S  V+A LL S SAF AP   P+ S               + AK V   E+SRQ LV+GIN VA+AV+VTLGPKGRNVVLER YG PEIVNDGVTIAR+I L DPEQNVG KL+QEVA+KSD KAGDGTTTST+MTQA+VN GM+ VT+G NPV L RGI+  A+++ D +K++AKPV    DL ++AT+A+G + EMG +IA A + VGD+GSTVVEESQT+ DEVEFTEGL+IDRGY+SPYFVKDQERQ+ EL  P++LVT+ KI  V++I+PLLE I K+K+PL I+AEDV+GEALSALVVNKMRGVLDVVAIKAPGFG+RR++  QDIA+ATGA+FVAEE+G+TL+SVT +MLG A+++V+ K+TTTIVT+    EAI  RI  +RRE +  ++ +D EK  +R+A+LGGGIARIKVGAATETELKDKKLRYEDALNSV+SA E+G+VPGGG+ L Y+ L   ++I+  MDD+DEK GA I+ ++L  P MQ+A NAG++G +V+ +I E    + +G G++AA+  Y +L+  GV+D AKV INA+ENSASIA +VLTTECL+TEIP   S +   + FD
Sbjct:    5 SAAVLA-LLTSASAF-APLKPPQQS------------LVILDAKKVSFREQSRQALVDGINQVADAVRVTLGPKGRNVVLERNYGAPEIVNDGVTIAREIVLRDPEQNVGAKLIQEVASKSDSKAGDGTTTSTIMTQALVNNGMKAVTSGVNPVGLNRGIRKAARVITDEIKKIAKPVSGIDDLKNVATIASG-SIEMGRIIAMAADKVGDTGSTVVEESQTLVDEVEFTEGLTIDRGYISPYFVKDQERQVAELVNPKILVTDAKIDDVNDIVPLLEQIVKTKDPLLIIAEDVTGEALSALVVNKMRGVLDVVAIKAPGFGNRRREYTQDIAIATGASFVAEELGITLDSVTLDMLGTADRIVIAKETTTIVTDGKQQEAIDARIAQLRREAENAENDYDAEKCTERIASLGGGIARIKVGAATETELKDKKLRYEDALNSVQSARELGIVPGGGACLAYLQLTMEDKIMEAMDDEDEKQGAKILIKALGFPAMQVASNAGLEGAVVLAKIQELAMAKGFGHGWDAAAMEYCDLMERGVIDPAKVTINAIENSASIAGLVLTTECLVTEIPIEMSEEDKQRLFD 574          
BLAST of EWM24977.1 vs. NCBI_GenBank
Match: gi|1210525706|dbj|GAX15522.1| (chaperonin GroEL [Fistulifera solaris])

HSP 1 Score: 697.967 bits (1800), Expect = 0.000e+0
Identity = 360/585 (61.54%), Postives = 458/585 (78.29%), Query Frame = 0
Query:   20 SMVVMATLLVSTSAFLAPAALPELSKTRSVAARRGSLTTTMMAKNVRLSEKSRQKLVEGINIVANAVKVTLGPKGRNVVLERKYGVPEIVNDGVTIARDIELSDPEQNVGVKLVQEVATKSDMKAGDGTTTSTVMTQAIVNQGMRQVTAGANPVALRRGIQHTAKILCDTVKQMAKPVESNKDLFDIATVATGGNAEMGAVIAKAFELVGDSGSTVVEESQTVQDEVEFTEGLSIDRGYVSPYFVKDQERQLVELRKPRVLVTEGKISAVHEILPLLEHIAKSKEPLFIVAEDVSGEALSALVVNKMRGVLDVVAIKAPGFGDRRKQLLQDIAVATGATFVAEEVGVTLESVTPEMLGVAEKVVVGKDTTTIVTNSNYAEAIKERILAIRREMDLMDSKFDKEKAQQRVAALGGGIARIKVGAATETELKDKKLRYEDALNSVKSAIEMGVVPGGGSTLLYM-LKKREEILAGMDDDDEKAGADIVFRSLSAPVMQIAENAGIDGGIVVERIFE---NQEWGWGYNAASGVYENLLNTGVVDSAKVVINALENSASIASMVLTTECLITEIPERKSLDQAAQDFD 600
            S  V+A LL S SAF AP   P+          + SL   + AK V   E+SRQ LV+GIN VA+AV+VTLGPKGRNVVLER YG PEIVNDGVTIAR+I L DPEQNVG KL+QEVA+KSD KAGDGTTTST+MTQA+VN GM+ VT+G NPV L RGI+  A+++ D +K++AKPV    DL ++AT+A+G + EMG +IA A + VGD+GSTVVEESQT+ DEVEFTEGL+IDRGY+SPYFVKDQERQ+ EL  P++LVT+ KI  V++I+PLLE I K+K+PL I+AEDV+GEALSALVVNKMRGVLDVVAIKAPGFG+RR++  QDIA+ATGA+FVAEE+G+TL+SVT +MLG A+++V+ K+TTTIVT+    EAI  RI  +RRE +  ++ +D EK  +R+A+LGGGIARIKVGAATETELKDKKLRYEDALNSV+SA E+G+VPGGG+ L Y+ L   ++I+  MDD+DEK GA I+ ++L  P MQ+A NAG++G +V+ +I E    + +G G++AA+  Y +L+  GV+D AKV INA+ENSASIA +VLTTECL+TEIP   S +   + FD
Sbjct:    5 SAAVLA-LLTSASAF-APPKPPQ----------QQSLVI-LDAKKVSFREQSRQALVDGINQVADAVRVTLGPKGRNVVLERNYGAPEIVNDGVTIAREIVLRDPEQNVGAKLIQEVASKSDSKAGDGTTTSTIMTQALVNNGMKAVTSGVNPVGLNRGIRKAARVITDEIKRIAKPVSGIDDLKNVATIASG-SIEMGRIIAMAADKVGDTGSTVVEESQTLVDEVEFTEGLTIDRGYISPYFVKDQERQVAELVNPKILVTDAKIDDVNDIVPLLEQIVKTKDPLLIIAEDVTGEALSALVVNKMRGVLDVVAIKAPGFGNRRREYTQDIAIATGASFVAEELGITLDSVTLDMLGTADRIVIAKETTTIVTDGKQQEAIDARIAQLRREAENAENDYDAEKCTERIASLGGGIARIKVGAATETELKDKKLRYEDALNSVQSARELGIVPGGGACLAYLQLTMEDKIMEAMDDEDEKQGAKILIKALGFPAMQVASNAGLEGAVVLAKIQELAMTKGFGHGWDAAAMEYCDLMERGVIDPAKVTINAIENSASIAGLVLTTECLVTEIPIEMSEEDKQRLFD 575          
BLAST of EWM24977.1 vs. NCBI_GenBank
Match: gi|1072227647|gb|OEU12386.1| (CPN60 protein [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 685.256 bits (1767), Expect = 0.000e+0
Identity = 348/590 (58.98%), Postives = 451/590 (76.44%), Query Frame = 0
Query:   15 MKRGVSMVVMATLLVSTSAFLAPAALPELSKTRSVAARRGSLTTTMMAKNVRLSEKSRQKLVEGINIVANAVKVTLGPKGRNVVLERKYGVPEIVNDGVTIARDIELSDPEQNVGVKLVQEVATKSDMKAGDGTTTSTVMTQAIVNQGMRQVTAGANPVALRRGIQHTAKILCDTVKQMAKPVESNKDLFDIATVATGGNAEMGAVIAKAFELVGDSGSTVVEESQTVQDEVEFTEGLSIDRGYVSPYFVKDQERQLVELRKPRVLVTEGKISAVHEILPLLEHIAKSKEPLFIVAEDVSGEALSALVVNKMRGVLDVVAIKAPGFGDRRKQLLQDIAVATGATFVAEEVGVTLESVTPEMLGVAEKVVVGKDTTTIVTNSNYAEAIKERILAIRREMDLMDSKFDKEKAQQRVAALGGGIARIKVGAATETELKDKKLRYEDALNSVKSAIEMGVVPGGGSTLLYMLK-KREEILAGMDDDDEKAGADIVFRSLSAPVMQIAENAGIDGGIVVERIFE---NQEWGWGYNAASGVYENLLNTGVVDSAKVVINALENSASIASMVLTTECLITEIPERKSLDQAAQDFD 600
            MK  ++ VV  ++L ++S   AP+             + G     + AK V   E SR+ LV+GIN VA+AVKVTLGPKGRNVVLER YG PEIVNDGVTIAR+I L DPE+NVG KL+QEVA KSD KAGDGTTTST+MTQAIVN GMR VT+G NPVAL RGI+    ++ + +K  A PV   +DL ++AT+A+G + +MG +IA+A + VG++GSTVVEESQT+ DE+EFTEGL+IDRGY+SPYFVKDQERQ+ EL  PR+LVT+ KI  V++++PLLE + KSK+PL I+AEDV+GEALSALVVNKMRGVLDVVAIKAPGFG+RR++  QDIA+ATGA+FVAEE+G+TL+SVT +MLG A+++VV K++TTIVT+  + + I  RI  +RRE D  D+ FDK+K  +R+A+LGGGIARIKVGAATETELKDKKLRYEDALNSV SA E+GVVPGGG+ L ++ +   +EIL  M DDDE++GA I+  +L AP MQ+A NAGI+G +++ +I      + + WG++A +  + +L   G++D AKV INA+ENSAS+A +VLTTECL+TEIP   S +   + FD
Sbjct:    1 MKLSLTRVVAVSVLATSSTAFAPSQ------------KFGKSAVVLEAKKVSFREDSRRALVKGINQVADAVKVTLGPKGRNVVLERNYGAPEIVNDGVTIAREIILRDPEENVGAKLIQEVAQKSDSKAGDGTTTSTIMTQAIVNNGMRAVTSGINPVALNRGIRKAGNLVSEKIKFHASPVTGIEDLKNVATIASG-SVDMGRIIAQAADKVGETGSTVVEESQTLFDEIEFTEGLTIDRGYISPYFVKDQERQIGELVNPRILVTDAKIDNVNDVVPLLEQLVKSKDPLLIIAEDVTGEALSALVVNKMRGVLDVVAIKAPGFGNRRREYTQDIAIATGASFVAEELGITLDSVTLDMLGTADRIVVAKESTTIVTDGKHQKDIDARITQLRREADAADTDFDKDKFTERIASLGGGIARIKVGAATETELKDKKLRYEDALNSVDSARELGVVPGGGACLAHIQQMYTDEILEAMTDDDERSGAKILLEALGAPAMQVATNAGIEGAVILSKIRTLGVEKGFAWGWDAGTMEFCDLYERGILDPAKVTINAIENSASVAGLVLTTECLVTEIPIEMSEEDKQRMFD 577          
BLAST of EWM24977.1 vs. NCBI_GenBank
Match: gi|219111583|ref|XP_002177543.1| (nuclear-encoded-like protein of chloroplast gro [Phaeodactylum tricornutum CCAP 1055/1] >gi|217410428|gb|EEC50357.1| nuclear-encoded-like protein of chloroplast gro [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 685.256 bits (1767), Expect = 0.000e+0
Identity = 347/584 (59.42%), Postives = 458/584 (78.42%), Query Frame = 0
Query:   21 MVVMATLLVSTSAFLAPAALPELSKTRSVAARRGSLTTTMMAKNVRLSEKSRQKLVEGINIVANAVKVTLGPKGRNVVLERKYGVPEIVNDGVTIARDIELSDPEQNVGVKLVQEVATKSDMKAGDGTTTSTVMTQAIVNQGMRQVTAGANPVALRRGIQHTAKILCDTVKQMAKPVESNKDLFDIATVATGGNAEMGAVIAKAFELVGDSGSTVVEESQTVQDEVEFTEGLSIDRGYVSPYFVKDQERQLVELRKPRVLVTEGKISAVHEILPLLEHIAKSKEPLFIVAEDVSGEALSALVVNKMRGVLDVVAIKAPGFGDRRKQLLQDIAVATGATFVAEEVGVTLESVTPEMLGVAEKVVVGKDTTTIVTNSNYAEAIKERILAIRREMDLMDSKFDKEKAQQRVAALGGGIARIKVGAATETELKDKKLRYEDALNSVKSAIEMGVVPGGGSTLLYM-LKKREEILAGMDDDDEKAGADIVFRSLSAPVMQIAENAGIDGGIVVERI---FENQEWGWGYNAASGVYENLLNTGVVDSAKVVINALENSASIASMVLTTECLITEIPERKSLDQAAQDFD 600
            M+++AT   S+SAF+     P+ S   S A         + AK V   E SR+ LV GIN VA+AV+VTLGPKGRNVVLER YG PEIVNDGVTIAR+I L DPE+NVG +L+QEVA KSD KAGDGTTTST+MTQA+VN GMR VTAG +PV L RG++  A+I+ D +  +A PV   +DL ++AT+A+G + EMG +IA+A + VGD+GSTVVEESQT+ DE+EFTEGL+IDRGY+SPYFVKDQERQ+ EL  P++LVT+ KI  V++I+PLLE + K+K+PL I+AEDV+GEALSALVVNKMRGVLDVVAIKAPGFG+RR++  QDIA+ATGA+FVAEE+G+TL+SVT +MLG A+++VVGK+ TTIVT+    EAI  RI  +RRE +  ++ +D +K ++RVA+LGGGIARIKVGAATETELKDKKLRYEDALNSV+SA E+G+VPGGG+ L ++ +  +E+I+  M+ +DE+ GA I+ ++++ P MQ+AENAGI+G +V+ +I    E + +G+G++A S  Y +L+  G++D AKV INA+ENSAS+A +VLTTECL+TEIP + S +   + FD
Sbjct:    1 MLLLAT--TSSSAFV-----PQSSSKPSFA---------LHAKKVSFKEDSRRALVAGINKVADAVRVTLGPKGRNVVLERNYGAPEIVNDGVTIAREISLRDPEENVGARLIQEVAAKSDSKAGDGTTTSTIMTQALVNNGMRAVTAGVSPVGLNRGLRKAARIIADEITAIATPVSGIEDLKNVATIASG-SIEMGRIIAQAADKVGDTGSTVVEESQTLIDEIEFTEGLTIDRGYISPYFVKDQERQVAELVNPKILVTDAKIDDVNDIVPLLEQLVKTKDPLLIIAEDVTGEALSALVVNKMRGVLDVVAIKAPGFGNRRREYTQDIAIATGASFVAEELGITLDSVTIDMLGTADRIVVGKEQTTIVTDGKQQEAIDARIAQLRREEETAETDYDADKCRERVASLGGGIARIKVGAATETELKDKKLRYEDALNSVQSARELGIVPGGGACLAHLQITLKEKIMDAMETEDERQGALIMIKAMAYPAMQVAENAGIEGAVVLAKIQNLCEEKGFGYGWDAGSMEYCDLMERGIIDPAKVTINAIENSASVAGLVLTTECLVTEIPIQMSEEDKQRMFD 567          
BLAST of EWM24977.1 vs. NCBI_GenBank
Match: gi|399949629|gb|AFP65287.1| (60 kDa heat shock protein, CPN60 protein (nucleomorph) [Chroomonas mesostigmatica CCMP1168])

HSP 1 Score: 674.855 bits (1740), Expect = 0.000e+0
Identity = 323/538 (60.04%), Postives = 433/538 (80.48%), Query Frame = 0
Query:   58 TTMMAKNVRLSEKSRQKLVEGINIVANAVKVTLGPKGRNVVLERKYGVPEIVNDGVTIARDIELSDPEQNVGVKLVQEVATKSDMKAGDGTTTSTVMTQAIVNQGMRQVTAGANPVALRRGIQHTAKILCDTVKQMAKPVESNKDLFDIATVATGGNAEMGAVIAKAFELVGDSGSTVVEESQTVQDEVEFTEGLSIDRGYVSPYFVKDQERQLVELRKPRVLVTEGKISAVHEILPLLEHIAKSKEPLFIVAEDVSGEALSALVVNKMRGVLDVVAIKAPGFGDRRKQLLQDIAVATGATFVAEEVGVTLESVTPEMLGVAEKVVVGKDTTTIVTNSNYAEAIKERILAIRREMDLMDSKFDKEKAQQRVAALGGGIARIKVGAATETELKDKKLRYEDALNSVKSAIEMGVVPGGGSTLLYMLKKREEILAGMDDDDEKAGADIVFRSLSAPVMQIAENAGIDGGIVVERIFENQEWGWGYNAASGVYENLLNTGVVDSAKVVINALENSASIASMVLTTECLITEIPERKSLDQA 595
            T MMAK V  SE+SR+ LV GIN VANAVK+TLGPKGRNVVLER  G P+++NDGVTIARDIEL DP +N G +L+QEVA+K+D+KAGDGTTTSTV+TQ+IVNQG++ V +G NP+AL+RGI+ T+++L   +K +A+P    +D+ +IAT+A GGN E+G +IA AFE VG++GST VEESQ++QDEV+FTEG+ +DRGY+SPYFVKD ERQ+ EL  PR++VT+ KI++V E++PLLE + +SKE L IVAED++GEALS LVVNKMRGVLDV AI++PGFG+RRK  L+DIA+ TGAT++AEEVG+TL+ ++ + LG A +VVV K+  TI+++    E +  RI  I+++++  DS FD+EK ++R+A LGGGIARIKVGAATETELKDKKLRYEDA+NS K+AIEMGV PGGGST L++ KK  EI     D++EK GA IV ++L AP++QIA+NAG +G +V+++  +  E+G G+NA++  +ENL  +GV+D+AK++  ALENS SIA+MVLTTE L+ EIPE+K   Q+
Sbjct:   65 TQMMAKRVVFSEESRKSLVNGINAVANAVKITLGPKGRNVVLERTLGSPQVINDGVTIARDIELEDPLENTGARLLQEVASKTDLKAGDGTTTSTVLTQSIVNQGIKAVASGVNPLALKRGIEKTSRLLVKEIKTLARPCNGIEDIRNIATIAAGGNEEIGRIIATAFEKVGENGSTTVEESQSLQDEVDFTEGMELDRGYISPYFVKDMERQIAELIDPRIVVTDKKITSVQELVPLLEMVVRSKESLLIVAEDITGEALSTLVVNKMRGVLDVCAIRSPGFGERRKAYLEDIAILTGATYIAEEVGLTLDKISIDQLGKATRVVVAKEACTIISDKASQEKVNARIEQIKKQIENTDSDFDREKGEERIARLGGGIARIKVGAATETELKDKKLRYEDAINSTKAAIEMGVTPGGGSTFLHLTKKISEIRDSFIDEEEKLGATIVGKALEAPILQIAKNAGQEGEVVLDKC-QRMEFGMGFNASNNKFENLFESGVIDAAKIICWALENSCSIAAMVLTTEALVVEIPEKKKNPQS 601          
The following BLAST results are available for this feature:
BLAST of EWM24977.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106610|gb|EWM24977.1|0.000e+0100.00chaperonin [Nannochloropsis gaditana][more]
gi|676391243|ref|XP_009038899.1|0.000e+067.84hypothetical protein AURANDRAFT_72012 [Aureococcus... [more]
gi|298707119|emb|CBJ29911.1|0.000e+064.83chaperonin cpn60 [Ectocarpus siliculosus][more]
gi|375332061|gb|AFA52570.1|0.000e+065.21chaperonin [Vaucheria litorea][more]
gi|224004005|ref|XP_002291674.1|0.000e+060.23predicted protein [Thalassiosira pseudonana CCMP13... [more]
gi|1210532053|dbj|GAX09481.1|0.000e+061.37chaperonin GroEL [Fistulifera solaris][more]
gi|1210525706|dbj|GAX15522.1|0.000e+061.54chaperonin GroEL [Fistulifera solaris][more]
gi|1072227647|gb|OEU12386.1|0.000e+058.98CPN60 protein [Fragilariopsis cylindrus CCMP1102][more]
gi|219111583|ref|XP_002177543.1|0.000e+059.42nuclear-encoded-like protein of chloroplast gro [P... [more]
gi|399949629|gb|AFP65287.1|0.000e+060.0460 kDa heat shock protein, CPN60 protein (nucleomo... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5703rna5703Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications