rna57, rna57 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna57
Unique Name	rna57
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1081
Alignment location	CM002455.1:167624..169350 +

Link to JBrowse

Properties


Property Name	Value
Product	polyadenylate-binding protein
Orig transcript id	gnl\|cribi\|Naga_101137g1.884.mrna
Orig protein id	gnl\|cribi\|Naga_101137g1.884
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:167624..169350 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101137g1	gene56	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna57	rna57-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30616.1	cds57	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:167624..169350+
coding sequence from alignment at CM002455.1:167624..169350+

mRNA sequence

>rna57 ID=rna57|Name=rna57|organism=Nannochloropsis gaditana|type=mRNA|length=1081bp
GGAACGGCCCCGGGACCGGAGGGCGTGGCCACGAAGCTAGAATACCGGGT
CTGGAACCCTTTCCGCTCCAAATTGGCCGCTGCCATCTTGGGTGGGGTGG
ATCATATATGGATGAAACCGGGTAGCAAGGTCCTCTACCTGGGCGCTGCG
AGCGGGACGACCGTCAGCCACGTCTCGGACATTGTCGGCCCCACGGGCTG
TGTCTACGCGGTGGAGTTCTCCCACCGGCCGGGGCGGGATCTGATCAACA
TGGCCAAGCTTCGGACCAATGTGATTCCCATTGTGGAGGACGCGCGGCAC
CCTTTGAAGTACCGGATGCTAGTCGGTATGGTCGATACGATTTTTGCGGA
CGTGGCGCAACCGGACCAAGCCCGTATTGTCTCGTTGAACTCCCATTACT
TCCTCAAGAACGGCGGGCACGTCGTCATCTCCATCAAAGCCTCCTGCATC
GACTCCACCGCCGCCCCGGAGGCTGTCTTTCAAAAAGAGGTGAAGAAGCT
TCAAGAAGAGAAGTTCAAACCTTTGGAACAGCTGACGCTTGAACCGTACG
AGCGAGATCACGCAGTGGTGGTTGCCACGTACCGACCGGCTCCGAAGACC
AAGAAGTAACAGCACAGGAAGGGAGGGAGGGAGGGCGGGAAGGAAAAGAG
ATTCGGAGTGGTTGAAGCAGACGTGGGTGGGAGAGGAGGGGCGCGCAGAA
GGTGACTGTGAACCGAGGTCTTGGGTCTTGTGTGGGATGGTAAAGGATGA
GAAATGACAGAAGCGGATCGGCACGGAAGGAAAAGGACGGAGAGGCGAGG
CCTGATATGGTGTCGCTCGAAAATGGGGAAGAAAGAAATGGAGCAGGGAT
GCCGGTTGATTTAAGGAAAGGCCATTACGAGGGTGTGAGTATGGAGGGAT
AGTGGATAAATTGAAAGTGGCACCGATGCCGGTTGGGAGGCACAAAGAGA
TGTGTCGGACTGAAAGCAAGTGATTCATGGACTATTTACAGCAGCAGCTG
CGGCGGCAGCAGTGAAGGCAAGGTAGCAGTAGGGGCAAGCGAAGCGACAA
AGATGAAAAAAGGAACGCGCGAGCCCGAAAT

protein sequence of rna57

>rna57-protein ID=rna57-protein|Name=rna57|organism=Nannochloropsis gaditana|type=polypeptide|length=298bp
MDAATANANTGMNGGANMPAQGAATGTGAGSGAPMYGNVRSASLYVGDLA
PSTTESQLFEAFSQIGKIQSIRILRDAITRQSLGYAYVNYYDTMDAERAI
DVLNFQPINGRPCRVMWVQRDPYLRKTGVGNIVIKNLHPTIDNKTLFDTF
SVFGNILSCKVVTDEHGQSRGFGFVHFDSEASAQGCIADVNGKIIGGQEV
VVEPFKRGHKVEALWTNLYVKNVPLDWDDARFKSEFEKYGEITSAVLRKV
DESERERRRRRRRRRRSRNQPCSQAPRTGVLASSTSSSTRQRRRRWRR

mRNA from alignment at CM002455.1:167624..169350+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna57 ID=rna57|Name=rna57|organism=Nannochloropsis gaditana|type=mRNA|length=1727bp|location=Sequence derived from alignment at CM002455.1:167624..169350+ (Nannochloropsis gaditana)
ATGGACGCAGCTACTGCCAACGCAAACACTGGAATGAACGGCGGCGCTAA
CATGCCTGCCCAAGGTGCAGCGACTGGAACTGGGGCTGGTTCTGGTGCTC
CTATGTACGGGAATGTACGCTCTGCTTCTCTCTATGTGGGTGACTTGGCC
CCCTCCACTACGGAATCGCAGCTTTTCGAGGCCTTTTCGCAGGTACGGCG
ACGCATCAACGGAGGAAAACGGGCAACCATGCGGCGCACTTCGTGGTGTT
GGTCACCATGGGATGGCAacggaggggtggaggacgaagaaaatggagga
ggggtggaaggagggaggaagggaaggtgttGCCTCACTCCGGTCGTCCC
CGCCTGCCTTTTGTCTCACGTTCTCCTGACATTTCCCCCTGACTGTGCAC
AGATTGGAAAGATTCAATCGATTCGTATCCTTCGTGACGCCATCACGCGT
CAGTCCCTCGGGTAAGCAGAGACTTTCTCCTGCGTgttttccgccctccc
ttcacagcctcctcccttcctcatgaCACCGTTTttgtccctcctttttc
taGGTACGCCTACGTGAACTACTACGATACCATGGACGCAGAGCGGGCCA
TCGACGTGTTGAATTTCCAACCCATCAACGGGCGTCCCTGCCGGGTCATG
TGGGTGCAACGAGACCCCTACCTTCGTAAGACTGGCGTGGGGAACATCGT
CATCAAGAACCTCCACCCCACCATCGACAACAAGACGCTTTTCGACACCT
TTTCTGTCTTTGGGAACATCTTGTCCTGTAAGGTGGTGACGGACGAACAC
GGACAGTCCCGGGGCTTCGGCTTTGTCCATTTTGACTCGGAGGTGAGGAA
CCtcgcgcctttccctccctccctccctccctcccttcctccctttctcc
ctcctccttccatccctgccttcttttgcctcccctcagccccgcccccc
gtaccctccctccctccctcttccccctccctccttccctccttcccctc
ccccctcacccaGGCGTCTGCGCAAGGCTGCATCGCCGATGTGAACGGGA
AGATCATCGGGGGTcaagaggtggtggtggagcccTTTAAGCGGGGACAC
AAGGTGGAGGCCTTGTGGACGAACTTGTACGTGAAGAACGTGCCCCTGGA
TTGGGATGACGCCCGGTTTAAGGTGAGTGCAAGGAGGGATCCGACAGGCT
GATCCGGTGGGATCGGGGCGATGGTCCCGTTGGGACCTCGGGACaatcga
gggaggggtttACCGTGCGGAGATGGATGAGCTCATAGCGTGACCCGAAC
Cctaaccctccctctccctccctccctccctccctccctccctccctccc
tccctgcttccctccccgcttccctcccctccctctttctcagTCGGAGT
TTGAAAAGTACGGTGAGATCACCTCTGCGGTCCTGCGCAAGGTGGACGAG
TCGGAGGTAGACGAacaggcggacgaggaggaggaggaggaggaggagag
cgcgggggcggaggagaaggaggggaagaccaaggaggagaaggagaagg
agggggaggagaagggggaaggcgagggggaggaagcgaaagagggagag
gaggagaaggagaagaagaaggaggaggagtcgaaACCAGCCGTGCTCCC
AGGCACCAAGAACCGGGGTTTTGGCTTCGTCAACTTCGTCGAGCACGAGG
CAgcgaagaaggcgatggaggagatga

Coding sequence (CDS) from alignment at CM002455.1:167624..169350+

>rna57 ID=rna57|Name=rna57|organism=Nannochloropsis gaditana|type=CDS|length=5382bp|location=Sequence derived from alignment at CM002455.1:167624..169350+ (Nannochloropsis gaditana)
ATGGACGCAGCTACTGCCAACGCAAACACTGGAATGAACGGCGGCGCTAA
CATGCCTGCCCAAGGTGCAGCGACTGGAACTGGGGCTGGTTCTGGTGCTC
CTATGTACGGGAATGTACGCTCTGCTTCTCTCTATGTGGGTGACTTGGCC
CCCTCCACTACGGAATCGCAGCTTTTCGAGGCCTTTTCGCAGATTGGAAA
GATTCAATCGATTCGTATCCTTCGTGACGCCATCACGCGTCAGTCCCTCG
GGTACGCCTACGTGAACTACTACGATACCATGGACGCAGAGCGGGCCATC
GACGTGTTGAATTTCCAACCCATCAACGGGCGTCCCTGCCGGGTCATGTG
GGTGCAACGAGACCCCTACCTTCGTAAGACTGGCGTGGGGAACATCGTCA
TCAAGAACCTCCACCCCACCATCGACAACAAGACGCTTTTCGACACCTTT
TCTGTCTTTGGGAACATCTTGTCCTGTAAGGTGGTGACGGACGAACACGG
ACAGTCCCGGGGCTTCGGCTTTGTCCATTTTGACTCGGAGGCGTCTGCGC
AAGGCTGCATCGCCGATGTGAACGGGAAGATCATCGGGGGTcaagaggtg
gtggtggagcccTTTAAGCGGGGACACAAGGTGGAGGCCTTGTGGACGAA
CTTGTACGTGAAGAACGTGCCCCTGGATTGGGATGACGCCCGGTTTAAGT
CGGAGTTTGAAAAGTACGGTGAGATCACCTCTGCGGTCCTGCGCAAGGTG
GACGAGTCGGAGagggagaggaggagaaggagaagaagaaggaggaggag
tcgaaACCAGCCGTGCTCCCAGGCACCAAGAACCGGGGTTTTGGCTTCGT
CAACTTCGTCGAGCACGAGGCAgcgaagaaggcgatggaggagatgaATG
GACGCAGCTACTGCCAACGCAAACACTGGAATGAACGGCGGCGCTAACAT
GCCTGCCCAAGGTGCAGCGACTGGAACTGGGGCTGGTTCTGGTGCTCCTA
TGTACGGGAATGTACGCTCTGCTTCTCTCTATGTGGGTGACTTGGCCCCC
TCCACTACGGAATCGCAGCTTTTCGAGGCCTTTTCGCAGATTGGAAAGAT
TCAATCGATTCGTATCCTTCGTGACGCCATCACGCGTCAGTCCCTCGGGT
ACGCCTACGTGAACTACTACGATACCATGGACGCAGAGCGGGCCATCGAC
GTGTTGAATTTCCAACCCATCAACGGGCGTCCCTGCCGGGTCATGTGGGT
GCAACGAGACCCCTACCTTCGTAAGACTGGCGTGGGGAACATCGTCATCA
AGAACCTCCACCCCACCATCGACAACAAGACGCTTTTCGACACCTTTTCT
GTCTTTGGGAACATCTTGTCCTGTAAGGTGGTGACGGACGAACACGGACA
GTCCCGGGGCTTCGGCTTTGTCCATTTTGACTCGGAGGCGTCTGCGCAAG
GCTGCATCGCCGATGTGAACGGGAAGATCATCGGGGGTcaagaggtggtg
gtggagcccTTTAAGCGGGGACACAAGGTGGAGGCCTTGTGGACGAACTT
GTACGTGAAGAACGTGCCCCTGGATTGGGATGACGCCCGGTTTAAGTCGG
AGTTTGAAAAGTACGGTGAGATCACCTCTGCGGTCCTGCGCAAGGTGGAC
GAGTCGGAGagggagaggaggagaaggagaagaagaaggaggaggagtcg
aaACCAGCCGTGCTCCCAGGCACCAAGAACCGGGGTTTTGGCTTCGTCAA
CTTCGTCGAGCACGAGGCAgcgaagaaggcgatggaggagatgaATGGAC
GCAGCTACTGCCAACGCAAACACTGGAATGAACGGCGGCGCTAACATGCC
TGCCCAAGGTGCAGCGACTGGAACTGGGGCTGGTTCTGGTGCTCCTATGT
ACGGGAATGTACGCTCTGCTTCTCTCTATGTGGGTGACTTGGCCCCCTCC
ACTACGGAATCGCAGCTTTTCGAGGCCTTTTCGCAGATTGGAAAGATTCA
ATCGATTCGTATCCTTCGTGACGCCATCACGCGTCAGTCCCTCGGGTACG
CCTACGTGAACTACTACGATACCATGGACGCAGAGCGGGCCATCGACGTG
TTGAATTTCCAACCCATCAACGGGCGTCCCTGCCGGGTCATGTGGGTGCA
ACGAGACCCCTACCTTCGTAAGACTGGCGTGGGGAACATCGTCATCAAGA
ACCTCCACCCCACCATCGACAACAAGACGCTTTTCGACACCTTTTCTGTC
TTTGGGAACATCTTGTCCTGTAAGGTGGTGACGGACGAACACGGACAGTC
CCGGGGCTTCGGCTTTGTCCATTTTGACTCGGAGGCGTCTGCGCAAGGCT
GCATCGCCGATGTGAACGGGAAGATCATCGGGGGTcaagaggtggtggtg
gagcccTTTAAGCGGGGACACAAGGTGGAGGCCTTGTGGACGAACTTGTA
CGTGAAGAACGTGCCCCTGGATTGGGATGACGCCCGGTTTAAGTCGGAGT
TTGAAAAGTACGGTGAGATCACCTCTGCGGTCCTGCGCAAGGTGGACGAG
TCGGAGagggagaggaggagaaggagaagaagaaggaggaggagtcgaaA
CCAGCCGTGCTCCCAGGCACCAAGAACCGGGGTTTTGGCTTCGTCAACTT
CGTCGAGCACGAGGCAgcgaagaaggcgatggaggagatgaATGGACGCA
GCTACTGCCAACGCAAACACTGGAATGAACGGCGGCGCTAACATGCCTGC
CCAAGGTGCAGCGACTGGAACTGGGGCTGGTTCTGGTGCTCCTATGTACG
GGAATGTACGCTCTGCTTCTCTCTATGTGGGTGACTTGGCCCCCTCCACT
ACGGAATCGCAGCTTTTCGAGGCCTTTTCGCAGATTGGAAAGATTCAATC
GATTCGTATCCTTCGTGACGCCATCACGCGTCAGTCCCTCGGGTACGCCT
ACGTGAACTACTACGATACCATGGACGCAGAGCGGGCCATCGACGTGTTG
AATTTCCAACCCATCAACGGGCGTCCCTGCCGGGTCATGTGGGTGCAACG
AGACCCCTACCTTCGTAAGACTGGCGTGGGGAACATCGTCATCAAGAACC
TCCACCCCACCATCGACAACAAGACGCTTTTCGACACCTTTTCTGTCTTT
GGGAACATCTTGTCCTGTAAGGTGGTGACGGACGAACACGGACAGTCCCG
GGGCTTCGGCTTTGTCCATTTTGACTCGGAGGCGTCTGCGCAAGGCTGCA
TCGCCGATGTGAACGGGAAGATCATCGGGGGTcaagaggtggtggtggag
cccTTTAAGCGGGGACACAAGGTGGAGGCCTTGTGGACGAACTTGTACGT
GAAGAACGTGCCCCTGGATTGGGATGACGCCCGGTTTAAGTCGGAGTTTG
AAAAGTACGGTGAGATCACCTCTGCGGTCCTGCGCAAGGTGGACGAGTCG
GAGagggagaggaggagaaggagaagaagaaggaggaggagtcgaaACCA
GCCGTGCTCCCAGGCACCAAGAACCGGGGTTTTGGCTTCGTCAACTTCGT
CGAGCACGAGGCAgcgaagaaggcgatggaggagatgaATGGACGCAGCT
ACTGCCAACGCAAACACTGGAATGAACGGCGGCGCTAACATGCCTGCCCA
AGGTGCAGCGACTGGAACTGGGGCTGGTTCTGGTGCTCCTATGTACGGGA
ATGTACGCTCTGCTTCTCTCTATGTGGGTGACTTGGCCCCCTCCACTACG
GAATCGCAGCTTTTCGAGGCCTTTTCGCAGATTGGAAAGATTCAATCGAT
TCGTATCCTTCGTGACGCCATCACGCGTCAGTCCCTCGGGTACGCCTACG
TGAACTACTACGATACCATGGACGCAGAGCGGGCCATCGACGTGTTGAAT
TTCCAACCCATCAACGGGCGTCCCTGCCGGGTCATGTGGGTGCAACGAGA
CCCCTACCTTCGTAAGACTGGCGTGGGGAACATCGTCATCAAGAACCTCC
ACCCCACCATCGACAACAAGACGCTTTTCGACACCTTTTCTGTCTTTGGG
AACATCTTGTCCTGTAAGGTGGTGACGGACGAACACGGACAGTCCCGGGG
CTTCGGCTTTGTCCATTTTGACTCGGAGGCGTCTGCGCAAGGCTGCATCG
CCGATGTGAACGGGAAGATCATCGGGGGTcaagaggtggtggtggagccc
TTTAAGCGGGGACACAAGGTGGAGGCCTTGTGGACGAACTTGTACGTGAA
GAACGTGCCCCTGGATTGGGATGACGCCCGGTTTAAGTCGGAGTTTGAAA
AGTACGGTGAGATCACCTCTGCGGTCCTGCGCAAGGTGGACGAGTCGGAG
agggagaggaggagaaggagaagaagaaggaggaggagtcgaaACCAGCC
GTGCTCCCAGGCACCAAGAACCGGGGTTTTGGCTTCGTCAACTTCGTCGA
GCACGAGGCAgcgaagaaggcgatggaggagatgaATGGACGCAGCTACT
GCCAACGCAAACACTGGAATGAACGGCGGCGCTAACATGCCTGCCCAAGG
TGCAGCGACTGGAACTGGGGCTGGTTCTGGTGCTCCTATGTACGGGAATG
TACGCTCTGCTTCTCTCTATGTGGGTGACTTGGCCCCCTCCACTACGGAA
TCGCAGCTTTTCGAGGCCTTTTCGCAGATTGGAAAGATTCAATCGATTCG
TATCCTTCGTGACGCCATCACGCGTCAGTCCCTCGGGTACGCCTACGTGA
ACTACTACGATACCATGGACGCAGAGCGGGCCATCGACGTGTTGAATTTC
CAACCCATCAACGGGCGTCCCTGCCGGGTCATGTGGGTGCAACGAGACCC
CTACCTTCGTAAGACTGGCGTGGGGAACATCGTCATCAAGAACCTCCACC
CCACCATCGACAACAAGACGCTTTTCGACACCTTTTCTGTCTTTGGGAAC
ATCTTGTCCTGTAAGGTGGTGACGGACGAACACGGACAGTCCCGGGGCTT
CGGCTTTGTCCATTTTGACTCGGAGGCGTCTGCGCAAGGCTGCATCGCCG
ATGTGAACGGGAAGATCATCGGGGGTcaagaggtggtggtggagcccTTT
AAGCGGGGACACAAGGTGGAGGCCTTGTGGACGAACTTGTACGTGAAGAA
CGTGCCCCTGGATTGGGATGACGCCCGGTTTAAGTCGGAGTTTGAAAAGT
ACGGTGAGATCACCTCTGCGGTCCTGCGCAAGGTGGACGAGTCGGAGagg
gagaggaggagaaggagaagaagaaggaggaggagtcgaaACCAGCCGTG
CTCCCAGGCACCAAGAACCGGGGTTTTGGCTTCGTCAACTTCGTCGAGCA
CGAGGCAgcgaagaaggcgatggaggagatga

Synonyms

Publications