EWM30616.1, cds57 (CDS) Nannochloropsis gaditana

Overview
NameEWM30616.1
Unique Namecds57
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:167624..167815 +
Alignment locationCM002455.1:168026..168084 +
Alignment locationCM002455.1:168177..168465 +
Alignment locationCM002455.1:168637..168795 +
Alignment locationCM002455.1:169017..169079 +
Alignment locationCM002455.1:169216..169350 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30616.1
Productpolyadenylate-binding protein
Orig transcript idgnl|cribi|Naga_101137g1.884.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:167624..167815 +
CM002455.1supercontigCM002455.1:168026..168084 +
CM002455.1supercontigCM002455.1:168177..168465 +
CM002455.1supercontigCM002455.1:168637..168795 +
CM002455.1supercontigCM002455.1:169017..169079 +
CM002455.1supercontigCM002455.1:169216..169350 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0000166nucleotide binding
GO:0003676nucleic acid binding
Vocabulary: Biological Process
TermDefinition
GO:0008150biological_process
Vocabulary: INTERPRO
TermDefinition
IPR012677Nucleotide-bd_a/b_plait
IPR000504RRM_dom
Homology
[Close]
BLAST of EWM30616.1 vs. NCBI_GenBank
Match: gi|585113289|gb|EWM30616.1| (polyadenylate-binding protein [Nannochloropsis gaditana])

HSP 1 Score: 619.387 bits (1596), Expect = 0.000e+0
Identity = 298/298 (100.00%), Postives = 298/298 (100.00%), Query Frame = 0 
Query:    1 MDAATANANTGMNGGANMPAQGAATGTGAGSGAPMYGNVRSASLYVGDLAPSTTESQLFEAFSQIGKIQSIRILRDAITRQSLGYAYVNYYDTMDAERAIDVLNFQPINGRPCRVMWVQRDPYLRKTGVGNIVIKNLHPTIDNKTLFDTFSVFGNILSCKVVTDEHGQSRGFGFVHFDSEASAQGCIADVNGKIIGGQEVVVEPFKRGHKVEALWTNLYVKNVPLDWDDARFKSEFEKYGEITSAVLRKVDESERERRRRRRRRRRSRNQPCSQAPRTGVLASSTSSSTRQRRRRWRR 298
            MDAATANANTGMNGGANMPAQGAATGTGAGSGAPMYGNVRSASLYVGDLAPSTTESQLFEAFSQIGKIQSIRILRDAITRQSLGYAYVNYYDTMDAERAIDVLNFQPINGRPCRVMWVQRDPYLRKTGVGNIVIKNLHPTIDNKTLFDTFSVFGNILSCKVVTDEHGQSRGFGFVHFDSEASAQGCIADVNGKIIGGQEVVVEPFKRGHKVEALWTNLYVKNVPLDWDDARFKSEFEKYGEITSAVLRKVDESERERRRRRRRRRRSRNQPCSQAPRTGVLASSTSSSTRQRRRRWRR
Sbjct:    1 MDAATANANTGMNGGANMPAQGAATGTGAGSGAPMYGNVRSASLYVGDLAPSTTESQLFEAFSQIGKIQSIRILRDAITRQSLGYAYVNYYDTMDAERAIDVLNFQPINGRPCRVMWVQRDPYLRKTGVGNIVIKNLHPTIDNKTLFDTFSVFGNILSCKVVTDEHGQSRGFGFVHFDSEASAQGCIADVNGKIIGGQEVVVEPFKRGHKVEALWTNLYVKNVPLDWDDARFKSEFEKYGEITSAVLRKVDESERERRRRRRRRRRSRNQPCSQAPRTGVLASSTSSSTRQRRRRWRR 298
[Close]
BLAST of EWM30616.1 vs. NCBI_GenBank
Match: gi|1065008417|gb|ODV96683.1| (hypothetical protein PACTADRAFT_48507 [Pachysolen tannophilus NRRL Y-2460])

HSP 1 Score: 270.396 bits (690), Expect = 1.090e-82
Identity = 128/215 (59.53%), Postives = 157/215 (73.02%), Query Frame = 0 
Query:   41 SASLYVGDLAPSTTESQLFEAFSQIGKIQSIRILRDAITRQSLGYAYVNYYDTMDAERAIDVLNFQPINGRPCRVMWVQRDPYLRKTGVGNIVIKNLHPTIDNKTLFDTFSVFGNILSCKVVTDEHGQSRGFGFVHFDSEASAQGCIADVNGKIIGGQEVVVEPF----KRGHKVEAL---WTNLYVKNVPLDWDDARFKSEFEKYGEITSAVLR 248
            SASLYVG+L PS  ES+LFE FS IG++ SIR+ RDA+T++SLGYAYVN+ D  D ERA++ LN+ PI GRPCR+MW QRDP LRK G GNI IKNLHP IDNKTL DTFS FGNILSCKV TDE G S+GFGFVH+++  +AQ  I +VNG ++  +EV V P     +R  K E L   +TN+YVKN+ L+  +  FKS FE YG ITS  + 
Sbjct:   51 SASLYVGELDPSVNESELFEVFSPIGQVSSIRVCRDAVTKRSLGYAYVNFQDVKDGERALEELNYTPIKGRPCRIMWSQRDPALRKNGAGNIFIKNLHPAIDNKTLHDTFSAFGNILSCKVATDELGNSKGFGFVHYETAEAAQAAIENVNGMLLNDREVYVGPHVSKRERESKFEDLKANFTNIYVKNIDLEVSEETFKSLFEPYGNITSIYIE 265

HSP 2 Score: 100.138 bits (248), Expect = 6.253e-20
Identity = 66/237 (27.85%), Postives = 116/237 (48.95%), Query Frame = 0 
Query:   41 SASLYVGDLAPSTTESQLFEAFSQIGKIQSIRILRDAITRQSLGYAYVNYYDTMDAERAIDVLNFQPINGRPC----RVMWVQRDPYLR--KTGVGNIVIKNLHPTIDNKTLFDTFSVFGNILSCKVVTDEHGQSRGFGFVHFDSEASAQGCIADVNGKIIGGQEVVV----------EPFKRGHKVEALW-------TNLYVKNVPLDWDDARFKSEFEKYGEITSAVLRKVDESE 254
            + ++++ +L P+     L + FS  G I S ++  D +   S G+ +V+Y     A+ AI+ +N   +N R       V   +R+      K    NI +KN+   +  +T    F  +GNI S  +  D  G+SRGFGFV+F++   AQ  + ++N K + G+++ V          E  K+ ++   L         NL+VKN+    DD + ++EFE +G ITS  +   D+++
Sbjct:  139 AGNIFIKNLHPAIDNKTLHDTFSAFGNILSCKVATDELGN-SKGFGFVHYETAEAAQAAIENVNGMLLNDREVYVGPHVSKRERESKFEDLKANFTNIYVKNIDLEVSEETFKSLFEPYGNITSIYIEYDSDGKSRGFGFVNFENHEDAQRAVEELNDKEVNGKKIYVGRAQKKRERLEELKKQYEAARLEKLSKYQGVNLFVKNLDDTIDDEKLQAEFEPFGTITSVKVMTDDQAK 374

HSP 3 Score: 91.2781 bits (225), Expect = 6.709e-17
Identity = 57/176 (32.39%), Postives = 90/176 (51.14%), Query Frame = 0 
Query:   43 SLYVGDLAPSTTESQLFEAFSQIGKIQSIRILRDAITRQSLGYAYVNYYDTMDAERAIDVLNFQPINGRPCRVMWVQ----------------RDPYLRKTGVGNIVIKNLHPTIDNKTLFDTFSVFGNILSCKVVTDEHGQSRGFGFVHFDSEASAQGCIADVNGKIIGGQEVVV 202
            ++YV ++    +E      F   G I SI I  D+  + S G+ +VN+ +  DA+RA++ LN + +NG+   V   Q                R   L K    N+ +KNL  TID++ L   F  FG I S KV+TD+  +S+GFGFV F S   A   +A++N +++ G+ + V
Sbjct:  234 NIYVKNIDLEVSEETFKSLFEPYGNITSIYIEYDSDGK-SRGFGFVNFENHEDAQRAVEELNDKEVNGKKIYVGRAQKKRERLEELKKQYEAARLEKLSKYQGVNLFVKNLDDTIDDEKLQAEFEPFGTITSVKVMTDDQAKSKGFGFVCFSSPEEASKALAEMNQRMVAGKPLYV 408
[Close]
BLAST of EWM30616.1 vs. NCBI_GenBank
Match: gi|1102303889|ref|XP_018984017.1| (hypothetical protein BABINDRAFT_162391 [Babjeviella inositovora NRRL Y-12698] >gi|1063256399|gb|ODQ78689.1| hypothetical protein BABINDRAFT_162391 [Babjeviella inositovora NRRL Y-12698])

HSP 1 Score: 266.929 bits (681), Expect = 2.024e-81
Identity = 132/238 (55.46%), Postives = 166/238 (69.75%), Query Frame = 0 
Query:   19 PAQGAATGTGAGSGAPMYGNVRSASLYVGDLAPSTTESQLFEAFSQIGKIQSIRILRDAITRQSLGYAYVNYYDTMDAERAIDVLNFQPINGRPCRVMWVQRDPYLRKTGVGNIVIKNLHPTIDNKTLFDTFSVFGNILSCKVVTDEHGQSRGFGFVHFDSEASAQGCIADVNGKIIGGQEVVVEPF----KRGHKVE---ALWTNLYVKNVPLDWDDARFKSEFEKYGEITSAVLRK 249
            PA  AA+   A S  P+  N  SASLYVG+L P  +E+ LFE FS IG + SIR+ RDA++++SLGYAYVN+++  D ERAID LN+ PI  RPCR+MW QRDP LR+ G GNI IKNLHP IDNK L DTFS FG ILSCKV TDE GQS+GFGFVH+D++ +A   I +VNG ++  +EV V P      R  K+E   A++TN+YVKNV +++ +  FK  FE YG ITS  L K
Sbjct:   27 PATTAASEE-ASSSQPVSDN--SASLYVGELDPQVSEATLFEVFSAIGPVSSIRVCRDAVSKRSLGYAYVNFHNVSDGERAIDELNYSPIKNRPCRIMWSQRDPSLRRNGAGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEMGQSKGFGFVHYDTDEAATAAIDNVNGMLLNDREVYVGPHISKKDRESKIEDMKAVFTNVYVKNVDVEFSEEEFKKLFETYGAITSIHLEK 261

HSP 2 Score: 93.9745 bits (232), Expect = 8.042e-18
Identity = 56/176 (31.82%), Postives = 94/176 (53.41%), Query Frame = 0 
Query:   43 SLYVGDLAPSTTESQLFEAFSQIGKIQSIRILRDAITRQSLGYAYVNYYDTMDAERAIDVLNFQPINGRPCRVMWVQ----------------RDPYLRKTGVGNIVIKNLHPTIDNKTLFDTFSVFGNILSCKVVTDEHGQSRGFGFVHFDSEASAQGCIADVNGKIIGGQEVVV 202
            ++YV ++    +E +  + F   G I SI + +DA  + S G+ +VN+  T DA RA+D LN + ING+   V   Q                R   L K    N+ +KNL  ++D++ L + F+ FG I S KV++D+ G+S+GFGFV F +   A   ++++N  ++ G+ + V
Sbjct:  229 NVYVKNVDVEFSEEEFKKLFETYGAITSIHLEKDAEGK-SRGFGFVNFETTDDAARAVDELNDKEINGKKLYVGRAQKKGERLQELKKQYEAIRMEKLSKYQGVNLFVKNLDDSVDDEMLKEAFASFGTITSVKVMSDDAGKSKGFGFVCFSTPEEATKAVSEMNQHMLAGKPLYV 403

HSP 3 Score: 88.1965 bits (217), Expect = 6.258e-16
Identity = 65/239 (27.20%), Postives = 107/239 (44.77%), Query Frame = 0 
Query:   41 SASLYVGDLAPSTTESQLFEAFSQIGKIQSIRILRDAITRQSLGYAYVNYYDTMDAERAIDVLNFQPINGRPCRVMWVQRDPYLRKTG-----------VGNIVIKNLHPTIDNKTLFDTFSVFGNILSCKVVTDEHGQSRGFGFVHFDSEASAQGCIADVNGKIIGGQEVVV-EPFKRGHKVEAL----------------WTNLYVKNVPLDWDDARFKSEFEKYGEITSAVLRKVD 251
            + ++++ +L P+     L + FS  GKI S ++  D +  QS G+ +V+Y     A  AID +N   +N R   V      P++ K               N+ +KN+      +     F  +G I S  +  D  G+SRGFGFV+F++   A   + ++N K I G+++ V    K+G +++ L                  NL+VKN+    DD   K  F  +G ITS  +   D
Sbjct:  134 AGNIFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEMG-QSKGFGFVHYDTDEAATAAIDNVNGMLLNDREVYV-----GPHISKKDRESKIEDMKAVFTNVYVKNVDVEFSEEEFKKLFETYGAITSIHLEKDAEGKSRGFGFVNFETTDDAARAVDELNDKEINGKKLYVGRAQKKGERLQELKKQYEAIRMEKLSKYQGVNLFVKNLDDSVDDEMLKEAFASFGTITSVKVMSDD 366
[Close]
BLAST of EWM30616.1 vs. NCBI_GenBank
Match: gi|294939182|ref|XP_002782349.1| (RNA-binding motif, single-stranded-interacting protein, putative [Perkinsus marinus ATCC 50983] >gi|239893941|gb|EER14144.1| RNA-binding motif, single-stranded-interacting protein, putative, partial [Perkinsus marinus ATCC 50983])

HSP 1 Score: 255.758 bits (652), Expect = 2.287e-81
Identity = 122/239 (51.05%), Postives = 162/239 (67.78%), Query Frame = 0 
Query:   19 PAQGAATGTGAGSGAPMYGNVRS---ASLYVGDLAPSTTESQLFEAFSQIGKIQSIRILRDAITRQSLGYAYVNYYDTMDAERAIDVLNFQPINGRPCRVMWVQRDPYLRKTGVGNIVIKNLHPTIDNKTLFDTFSVFGNILSCKVVTDEHGQSRGFGFVHFDSEASAQGCIADVNGKIIGGQEVVVEPFK----RGHKVEALWTNLYVKNVPLDWDDARFKSEFEKYGEITSAVLRKV 250
            P   A   T +G  AP  G V +   ASLY GDLAP   E+ L+E F+ IG + SIR+ RD++TR+SLGYAY+N+++  DAERA+D LN+ PINGRPCR+MW  RDP LR++G GN+ +KNL   IDNK L+DTFS+FGNILSCKV     G+SRGFGFVHF+S+ SA+  IA +NG  IG + V V  FK    R       +TN+Y+K++P  W + + + EF  +GEITS  ++ V
Sbjct:   22 PPTQATVDTTSGDPAPTVGGVPTQQFASLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDTLNYSPINGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAQFKKTADRSDGSPKNFTNVYIKHIPPSWTEEKIREEFGAFGEITSFAMQTV 260
[Close]
BLAST of EWM30616.1 vs. NCBI_GenBank
Match: gi|1210522179|dbj|GAX18941.1| (polyadenylate-binding protein [Fistulifera solaris])

HSP 1 Score: 267.7 bits (683), Expect = 3.057e-81
Identity = 128/238 (53.78%), Postives = 167/238 (70.17%), Query Frame = 0 
Query:   19 PAQGAATGTGAGSGAPMYGNV----RSASLYVGDLAPSTTESQLFEAFSQIGKIQSIRILRDAITRQSLGYAYVNYYDTMDAERAIDVLNFQPINGRPCRVMWVQRDPYLRKTGVGNIVIKNLHPTIDNKTLFDTFSVFGNILSCKVVTD-EHGQSRGFGFVHFDSEASAQGCIADVNGKIIGGQEVVVEPFKRGHKVEAL--WTNLYVKNVPLDWDDARFKSEFEKYGEITSAVLRK 249
            P+  A+  TG G       NV    R+ SLYVGDLAP   ES LFE FS +G + SIR+ RDA+TR+SLGYAYVN++   DAERA+D +NF  I  +PCR+MW QRDP LR++GVGNI +KNLH +IDNK L+DTFS+FGNILSCKVVTD E G S+G+G+VH+++  +A   I  ++G +I GQEV V  F R +    +  WTN YVKN+P +WDD R + EF ++GE+ SA + K
Sbjct:    7 PSVDASNETGPGDVGLAQSNVGDAFRTPSLYVGDLAPDVNESLLFEIFSALGPVASIRVCRDAVTRRSLGYAYVNFHQMADAERALDTMNFSMIKSKPCRIMWSQRDPSLRRSGVGNIFVKNLHESIDNKQLYDTFSLFGNILSCKVVTDRETGGSKGYGYVHYETAEAANAAIEKLHGMLIDGQEVQVGHFMRRNDRPDVNAWTNCYVKNIPYEWDDNRLEQEFAQFGEVISAAVSK 244
[Close]
BLAST of EWM30616.1 vs. NCBI_GenBank
Match: gi|1210529424|dbj|GAX12058.1| (polyadenylate-binding protein [Fistulifera solaris])

HSP 1 Score: 267.314 bits (682), Expect = 4.250e-81
Identity = 128/238 (53.78%), Postives = 167/238 (70.17%), Query Frame = 0 
Query:   19 PAQGAATGTGAGSGAPMYGNV----RSASLYVGDLAPSTTESQLFEAFSQIGKIQSIRILRDAITRQSLGYAYVNYYDTMDAERAIDVLNFQPINGRPCRVMWVQRDPYLRKTGVGNIVIKNLHPTIDNKTLFDTFSVFGNILSCKVVTD-EHGQSRGFGFVHFDSEASAQGCIADVNGKIIGGQEVVVEPFKRGHKVEAL--WTNLYVKNVPLDWDDARFKSEFEKYGEITSAVLRK 249
            P+  A+  TG G       NV    R+ SLYVGDLAP   ES LFE FS +G + SIR+ RDA+TR+SLGYAYVN++   DAERA+D +NF  I  +PCR+MW QRDP LR++GVGNI +KNLH +IDNK L+DTFS+FGNILSCKVVTD E G S+G+G+VH+++  +A   I  ++G +I GQEV V  F R +    +  WTN YVKN+P +WDD R + EF ++GE+ SA + K
Sbjct:    7 PSVDASNETGPGDVGLAQSNVGDAFRTPSLYVGDLAPDVNESLLFEIFSALGPVASIRVCRDAVTRRSLGYAYVNFHQMADAERALDTMNFSMIKSKPCRIMWSQRDPSLRRSGVGNIFVKNLHESIDNKQLYDTFSLFGNILSCKVVTDRETGGSKGYGYVHYETAEAANAAIEKLHGMLIDGQEVQVGHFMRRNDRPDVNAWTNCYVKNIPYEWDDNRLEQEFAQFGEVISAAVSK 244
[Close]
BLAST of EWM30616.1 vs. NCBI_GenBank
Match: gi|294877113|ref|XP_002767904.1| (protein HSH49, putative [Perkinsus marinus ATCC 50983] >gi|239869872|gb|EER00622.1| protein HSH49, putative, partial [Perkinsus marinus ATCC 50983])

HSP 1 Score: 255.373 bits (651), Expect = 6.161e-81
Identity = 121/237 (51.05%), Postives = 161/237 (67.93%), Query Frame = 0 
Query:   19 PAQGAATGTGAGSGAPMYGNVRS---ASLYVGDLAPSTTESQLFEAFSQIGKIQSIRILRDAITRQSLGYAYVNYYDTMDAERAIDVLNFQPINGRPCRVMWVQRDPYLRKTGVGNIVIKNLHPTIDNKTLFDTFSVFGNILSCKVVTDEHGQSRGFGFVHFDSEASAQGCIADVNGKIIGGQEVVVEPFK----RGHKVEALWTNLYVKNVPLDWDDARFKSEFEKYGEITSAVLR 248
            P   A   T +G  AP  G V +   ASLY GDLAP   E+ L+E F+ IG + SIR+ RD++TR+SLGYAY+N+++  DAERA+D LN+ PINGRPCR+MW  RDP LR++G GN+ +KNL   IDNK L+DTFS+FGNILSCKV     G+SRGFGFVHF+S+ SA+  IA +NG  IG + V V  FK    R       +TN+Y+K++P  W + + + EF  +GEITS  ++
Sbjct:   23 PPTQATVDTTSGDPAPTVGGVPTQQFASLYAGDLAPDVNEAVLYEVFNGIGPVASIRVCRDSVTRKSLGYAYINFHNVADAERALDTLNYSPINGRPCRLMWSHRDPALRRSGAGNVYVKNLDRNIDNKALYDTFSLFGNILSCKVALTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAQFKKTADRSDGSPKNFTNVYIKHIPPSWTEEKIREEFGAFGEITSFAMQ 259
[Close]
BLAST of EWM30616.1 vs. NCBI_GenBank
Match: gi|1064999027|gb|ODV88034.1| (hypothetical protein CANARDRAFT_26194 [Candida arabinofermentans NRRL YB-2248])

HSP 1 Score: 265.774 bits (678), Expect = 7.354e-81
Identity = 125/223 (56.05%), Postives = 158/223 (70.85%), Query Frame = 0 
Query:   42 ASLYVGDLAPSTTESQLFEAFSQIGKIQSIRILRDAITRQSLGYAYVNYYDTMDAERAIDVLNFQPINGRPCRVMWVQRDPYLRKTGVGNIVIKNLHPTIDNKTLFDTFSVFGNILSCKVVTDEHGQSRGFGFVHFDSEASAQGCIADVNGKIIGGQEVVVEPF----KRGHKVEAL---WTNLYVKNVPLDWDDARFKSEFEKYGEITSAVLRKVDESERER 257
            ASLYVG+L PS  E++LFE FS IG++ +IR+ RDA+++QSLGY YVN+ +  D  +A++ LN+  I G+PCR+MW QRDP LRK G GNI IKNLHP IDNKTL DTFS FGNILSCK+ TDEHG S+GFGFVH+D   SAQ  IA+VNG ++   EV V P      R  K+E L   +TN+YVK++ LDWD+   K+ F   G ITS  L K DES + +
Sbjct:   46 ASLYVGELDPSVNEAELFEVFSPIGQVSTIRVCRDAVSKQSLGYGYVNFQNHEDGNKAMEELNYSLIKGKPCRIMWSQRDPSLRKNGAGNIFIKNLHPAIDNKTLHDTFSAFGNILSCKIATDEHGNSKGFGFVHYDDAESAQSAIANVNGMLLNDHEVYVGPHLAKKDRQSKLEELVSNFTNVYVKDISLDWDEEALKNFFAXSGPITSVFLNK-DESGKSK 267

HSP 2 Score: 88.1965 bits (217), Expect = 6.597e-16
Identity = 67/245 (27.35%), Postives = 117/245 (47.76%), Query Frame = 0 
Query:   41 SASLYVGDLAPSTTESQLFEAFSQIGKIQSIRILRDAITRQSLGYAYVNYYDTMDAERAIDVLNFQPINGRPCRVMWVQRDPYLRK-----------TGVGNIVIKNLHPTIDNKTLFDTFSVFGNILSCKVVTDEHGQSRGFGFVHFDSEASAQGCIADVNGKIIGGQEVVV-EPFKRGHKVEAL----------------WTNLYVKNVPLDWDDARFKSEFEKYGEITSAVLRKVDESERER 257
            + ++++ +L P+     L + FS  G I S +I  D     S G+ +V+Y D   A+ AI  +N   +N     V      P+L K           +   N+ +K++    D + L + F+  G I S  +  DE G+S+G GFV++++   A   + ++NGK + G+ + V    K+  ++E+L                  NL+VKN+    DD + + EF+ YG ITSA +  +DES + +
Sbjct:  133 AGNIFIKNLHPAIDNKTLHDTFSAFGNILSCKIATDE-HGNSKGFGFVHYDDAESAQSAIANVNGMLLNDHEVYV-----GPHLAKKDRQSKLEELVSNFTNVYVKDISLDWDEEALKNFFAXSGPITSVFLNKDESGKSKGSGFVNYENHEDAAKAVEELNGKEVDGKAIYVGRAQKKKDRMESLKNMYESARQEKYSNYQGVNLFVKNLDDSIDDEKLEEEFKPYGTITSAKIM-LDESGKSK 370

HSP 3 Score: 84.7297 bits (208), Expect = 9.205e-15
Identity = 53/177 (29.94%), Postives = 93/177 (52.54%), Query Frame = 0 
Query:   43 SLYVGDLAPSTTESQLFEAFSQIGKIQSIRILRDAITRQSLGYAYVNYYDTMDAERAIDVLNFQPINGRPCRVMWVQR-----------------DPYLRKTGVGNIVIKNLHPTIDNKTLFDTFSVFGNILSCKVVTDEHGQSRGFGFVHFDSEASAQGCIADVNGKIIGGQEVVV 202
            ++YV D++    E  L   F+  G I S+ + +D  + +S G  +VNY +  DA +A++ LN + ++G+   V   Q+                 + Y    GV N+ +KNL  +ID++ L + F  +G I S K++ DE G+S+GFGFV F     A   IA+++ +++ G+ + V
Sbjct:  228 NVYVKDISLDWDEEALKNFFAXSGPITSVFLNKDE-SGKSKGSGFVNYENHEDAAKAVEELNGKEVDGKAIYVGRAQKKKDRMESLKNMYESARQEKYSNYQGV-NLFVKNLDDSIDDEKLEEEFKPYGTITSAKIMLDESGKSKGFGFVCFSVPEEATKAIAEMHQRMVAGKPLYV 402
[Close]
BLAST of EWM30616.1 vs. NCBI_GenBank
Match: gi|635364279|emb|CCI47247.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 264.233 bits (674), Expect = 2.319e-80
Identity = 123/241 (51.04%), Postives = 165/241 (68.46%), Query Frame = 0 
Query:   19 PAQGAATGTGAGSGAPMYGNVRSASLYVGDLAPSTTESQLFEAFSQIGKIQSIRILRDAITRQSLGYAYVNYYDTMDAERAIDVLNFQPINGRPCRVMWVQRDPYLRKTGVGNIVIKNLHPTIDNKTLFDTFSVFGNILSCKVVTDEHGQSRGFGFVHFDSEASAQGCIADVNGKIIGGQEVVVEPFKRGHKVEAL--WTNLYVKNVPLDWDDARFKSEFEKYGEITSAVLRKVDESERER 257
            P     T + +G   P     ++ASLYVGD+ P  TE+ LFE F+ +G + SIR+ RDA+TR+SLGYAYVN+++ +DAERA+D +NF  I G PCR+MW QRDP LRK+GVGNI +KNL P+IDNK L+DTFS+FGNILSCKV  D  GQS+G+G+VH+++  +A   I  +NG +I G EV V  F++  +   +  WTN YVKN+P  W DA  + EFE +G + SAV+ K   S   R
Sbjct:    8 PTNSPTTASASGPIQPF----QTASLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNIVDAERALDTMNFTCIKGVPCRIMWSQRDPTLRKSGVGNIFVKNLDPSIDNKALYDTFSLFGNILSCKVANDFSGQSKGYGYVHYETAEAATEAINKINGMLIAGTEVFVGHFQKRQERPDIEDWTNCYVKNLPTQWTDADLRKEFEPFGRVNSAVVMKDPNSATNR 244

HSP 2 Score: 82.0333 bits (201), Expect = 9.206e-14
Identity = 55/181 (30.39%), Postives = 94/181 (51.93%), Query Frame = 0 
Query:   45 YVGDLAPSTTESQLFEAFSQIGKIQSIRILRDAITRQSLGYAYVNYYDTMDAERAIDVLN---FQPINGRPCRVMWV-------QRDPYLRKT-------------GVGNIVIKNLHPTIDNKTLFDTFSVFGNILSCKVVTDEHGQSRGFGFVHFDSEASAQGCIADVNGKIIGGQEVVV 202
            YV +L    T++ L + F   G++ S  +++D  +  + G+ +VNY D   A  A++ L+   F+ +NG     ++V       +R+  LR+              GV N+ +KNL   + ++ L + F+ +G I S +V+ D  G SRGFGFV F +   A   +A++NGK+I G+ V V
Sbjct:  206 YVKNLPTQWTDADLRKEFEPFGRVNSAVVMKDPNSATNRGFGFVNYDDAEGAHAAVEGLSGKTFKGVNGVDLE-LYVGKAQKRSERERELRQKFDQLKLERINKYQGV-NLYVKNLDDLLQDEELREAFTNYGTITSARVMRDSTGNSRGFGFVCFSTPEEAATAVAEMNGKLIAGKPVYV 384

HSP 3 Score: 76.2554 bits (186), Expect = 7.654e-12
Identity = 69/231 (29.87%), Postives = 98/231 (42.42%), Query Frame = 0 
Query:   43 SLYVGDLAPSTTESQLFEAFSQIGKIQSIRILRDAITRQSLGYAYVNYYDTMDAERAIDVLNFQPINGRPCRVMWVQ-RDPYLRKTGVGNIVIKNLHPTIDNKTLFDTFSVFGNILSCKVVTDEHGQS-RGFGFVHFDSEASAQGCIADVNGKIIGG------QEVVVEPFKRGHKVEAL----------------WTNLYVKNVPLDWDDARFKSEFEKYGEITSA-VLR 248
            +++V +L PS     L++ FS  G I S ++  D  + QS GY YV+Y     A  AI+ +N   I G    V   Q R          N  +KNL     +  L   F  FG + S  V+ D +  + RGFGFV++D    A   +  ++GK   G      +  V +  KR  +   L                  NLYVKN+     D   +  F  YG ITSA V+R
Sbjct:  116 NIFVKNLDPSIDNKALYDTFSLFGNILSCKVAND-FSGQSKGYGYVHYETAEAATEAINKINGMLIAGTEVFVGHFQKRQERPDIEDWTNCYVKNLPTQWTDADLRKEFEPFGRVNSAVVMKDPNSATNRGFGFVNYDDAEGAHAAVEGLSGKTFKGVNGVDLELYVGKAQKRSERERELRQKFDQLKLERINKYQGVNLYVKNLDDLLQDEELREAFTNYGTITSARVMR 345
[Close]
BLAST of EWM30616.1 vs. NCBI_GenBank
Match: gi|1173959321|gb|OQS05569.1| (polyadenylate-binding protein 1-B [Thraustotheca clavata])

HSP 1 Score: 263.848 bits (673), Expect = 2.708e-80
Identity = 122/221 (55.20%), Postives = 158/221 (71.49%), Query Frame = 0 
Query:   40 RSASLYVGDLAPSTTESQLFEAFSQIGKIQSIRILRDAITRQSLGYAYVNYYDTMDAERAIDVLNFQPINGRPCRVMWVQRDPYLRKTGVGNIVIKNLHPTIDNKTLFDTFSVFGNILSCKVVTDE-HGQSRGFGFVHFDSEASAQGCIADVNGKIIGGQEVVVEPFKRGHKVEAL--WTNLYVKNVPLDWDDARFKSEFEKYGEITSAVLRKVDESERER 257
             +ASLYVGD+ P  TE+ LFE F+ +G + SIR+ RDA+TR+SLGYAYVN+++  DAERA+D +N+  I G PCR+MW QRDP LRK+GVGNI +KNL P+IDNK L+DTFS+FGNILSCKV  D   G S+G+G+VH+++  +A   IA +NG +I G EV V  F++      L  WTN YVKN+P  WDDA  + EFE +G ITS V+ K   SE  R
Sbjct:   24 HTASLYVGDIHPDVTEALLFEIFNAVGPVASIRVCRDAVTRRSLGYAYVNFHNVSDAERALDTMNYTSIKGVPCRIMWSQRDPSLRKSGVGNIFVKNLDPSIDNKALYDTFSLFGNILSCKVAIDNTSGGSKGYGYVHYETAEAANEAIAKINGMLIAGSEVFVGHFQKRQDRPDLADWTNCYVKNIPHSWDDATLRKEFEPFGSITSCVVMKDASSEGNR 244

HSP 2 Score: 85.5001 bits (210), Expect = 5.106e-15
Identity = 72/233 (30.90%), Postives = 105/233 (45.06%), Query Frame = 0 
Query:   43 SLYVGDLAPSTTESQLFEAFSQIGKIQSIRILRDAITRQSLGYAYVNYYDTMDAERAIDVLNFQPINGRPCRVMWVQRD---PYLRKTGVGNIVIKNLHPTIDNKTLFDTFSVFGNILSCKVVTDEHGQ-SRGFGFVHFDSEASAQGCIADVNGKIIG---GQEVVV---EPFKRGHKVEAL----------------WTNLYVKNVPLDWDDARFKSEFEKYGEITSAVLRK 249
            +++V +L PS     L++ FS  G I S ++  D  +  S GY YV+Y     A  AI  +N   I G    V   Q+    P L      N  +KN+  + D+ TL   F  FG+I SC V+ D   + +RGFGFV+FD   SA+  +  +N KI+    G +V +   +  KR  +   L                  NLYVKN+    +D   +  F   G ITS  + K
Sbjct:  115 NIFVKNLDPSIDNKALYDTFSLFGNILSCKVAIDNTSGGSKGYGYVHYETAEAANEAIAKINGMLIAGSEVFVGHFQKRQDRPDL--ADWTNCYVKNIPHSWDDATLRKEFEPFGSITSCVVMKDASSEGNRGFGFVNFDDPESARKAVEALNEKIVAQDDGADVALYVGKAQKRSERERELRQKFDLLKMERINKYQGVNLYVKNLDDQLNDDELREAFAGCGTITSCRIMK 345

HSP 3 Score: 80.1073 bits (196), Expect = 3.449e-13
Identity = 53/181 (29.28%), Postives = 93/181 (51.38%), Query Frame = 0 
Query:   45 YVGDLAPSTTESQLFEAFSQIGKIQSIRILRDAITRQSLGYAYVNYYDTMDAERAIDVLNFQPI---NGRPCRVMWV-------QRDPYLRKT-------------GVGNIVIKNLHPTIDNKTLFDTFSVFGNILSCKVVTDEHGQSRGFGFVHFDSEASAQGCIADVNGKIIGGQEVVV 202
            YV ++  S  ++ L + F   G I S  +++DA +  + G+ +VN+ D   A +A++ LN + +   +G     ++V       +R+  LR+              GV N+ +KNL   +++  L + F+  G I SC+++ D  G SRGFGFV F +   A   + D+NGKI+ G+ + V
Sbjct:  206 YVKNIPHSWDDATLRKEFEPFGSITSCVVMKDASSEGNRGFGFVNFDDPESARKAVEALNEKIVAQDDGADV-ALYVGKAQKRSERERELRQKFDLLKMERINKYQGV-NLYVKNLDDQLNDDELREAFAGCGTITSCRIMKDPTGNSRGFGFVCFATPEEATKAVTDMNGKIVSGKPIYV 384
The following BLAST results are available for this feature:
BLAST of EWM30616.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585113289|gb|EWM30616.1|0.000e+0100.00polyadenylate-binding protein [Nannochloropsis gad... [more]
gi|1065008417|gb|ODV96683.1|1.090e-8259.53hypothetical protein PACTADRAFT_48507 [Pachysolen ... [more]
gi|1102303889|ref|XP_018984017.1|2.024e-8155.46hypothetical protein BABINDRAFT_162391 [Babjeviell... [more]
gi|294939182|ref|XP_002782349.1|2.287e-8151.05RNA-binding motif, single-stranded-interacting pro... [more]
gi|1210522179|dbj|GAX18941.1|3.057e-8153.78polyadenylate-binding protein [Fistulifera solaris... [more]
gi|1210529424|dbj|GAX12058.1|4.250e-8153.78polyadenylate-binding protein [Fistulifera solaris... [more]
gi|294877113|ref|XP_002767904.1|6.161e-8151.05protein HSH49, putative [Perkinsus marinus ATCC 50... [more]
gi|1064999027|gb|ODV88034.1|7.354e-8156.05hypothetical protein CANARDRAFT_26194 [Candida ara... [more]
gi|635364279|emb|CCI47247.1|2.319e-8051.04unnamed protein product [Albugo candida][more]
gi|1173959321|gb|OQS05569.1|2.708e-8055.20polyadenylate-binding protein 1-B [Thraustotheca c... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna57rna57Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications