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Properties
| Property Name | Value |
|---|
| Product | Zinc finger, HIT-type |
| Orig transcript id | gnl|cribi|Naga_100122g14.3579.mrna |
| Orig protein id | gnl|cribi|Naga_100122g14.3579 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:612634..614920 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5699 ID=rna5699|Name=rna5699|organism=Nannochloropsis gaditana|type=mRNA|length=1223bp
GGCATATTTAGTTAGTTCACGGGTGGGGTGAGGATACATGAGATATGGCT
GCTACAAGACGAAAAACCTCTTCATGAGGCAATCCATGTGTTCGTATGTC
ATCGCAAGAAGTGGATTTGTATGTGATATACGTATGCGCCCTGGGACTCT
TTACCAGAATAGAGATTGTTAAGCACCCTGAGATGAGATACGGGGGTTTC
TTGCGGACTTGAAATGAAATACGCGCACCTGTCTGCACACGTATCATCGT
GGTGGGCGGTACAGCGTCCTTTTCAAAATTTAATATCATGGCAGAGCACA
TATTTCGGTACATGTGTATTAGGTCTCTTGTTAGAGACGAACGTCTATCG
CTAGGACAAGTTATGTGGAATGTCACATCTTCCGGCTCAGCTCTCTCTTG
CACGCTCATTCCACATCTATTTTTTAGCATGTGTTGCAAAATAGGTGGTC
CTTCTTCTACAATAACCCAAAGGCCAACCCAATGCTGTCTTGGGAGGAAA
AGCTTCAGAAAATCTACACGTTCGAGACGGTGGAAGATTTTTGGGCCCTG
TTCAATTCCGTTGTCGGCCCTTCCCGCTTGAGTATACAGGCCGACTATTA
TCTGTTTAAAGAGGGAGTCCGGCCCTCATACGAGGAGAATCCTGAAGGTG
GCGTGTGGATGTTTAATCTGGAAAAGGGAAACAAGAAGCGCTTGGAGGAG
GTCTGGTTGTATCTAGTCCTAGGTCTGATCGGAGAGACGATGGAGGATTC
TAACGACATTCTGGGAGCGGTCGTGAGCATCAAGAGGGGACAAGACAGGC
TGTCGCTATGGACGAAGACTGCCGCGGACAAGGAACTGCAAGTTCGGATT
GCTACGAGGGTGAAGATGAGCTTGGACCTGCCACCGGAGACCAAATTGGA
GTTTAAACCAAATCAGAAGGTGGCCGAAGCGGGGGGCTCCATGTCATCAG
CGCAGGACGTGAAGGGCTACACTGTATAACCCTTGACACCCTACCATACA
GTATTCAAATGCAAACGGAGAACCCCACATTTCTGCAGTTGACCGGGTTC
GGAGCGTGCTGAAATTTGTACAGGCATAACGAAAACAAGGAACCCCGCAC
ACTCTGCTGCATAAGTTTGGAAAGAATTTGTGCGGAAGGATCGATTGACG
TGCCATATCACTTGTTCTTGTTAAAAATGACAATTATTTGTGAGCTTCCT
TAATTTCAAAAACTCATAGCCTA back to topprotein sequence of rna5699 >rna5699-protein ID=rna5699-protein|Name=rna5699|organism=Nannochloropsis gaditana|type=polypeptide|length=495bp
MASLHIVKKTLPGKVSVRKTDLLPCPADSFKSEDNVLLRGPTRRICLVCK
SKSSAYACPRCSTPYCSAVCYKGHNQECTEGFYRHHVEEVIRLRQAEEVG
AGIPPGGKAAKRATINALRRVRLQTDETEAFCSGVGGDRLEELWARKDSL
DLEALTREEQRAFLASVANGDLSRDIEIWTPWWTQGGVSEGGQPLVRVER
DGLGSDGGNSKGGKGGATSDRPIDFTSLHEELQRLKKRMGFPVLRPFLTS
SVSPHLPYHLLDILFAYTCVLRTYNGACGLVPEDAADDLLALSPVLRYRL
RTGAEAGLVRLESARGALASSLEALRRWQLLQGPAPCASSTGMSSSLAMG
LAAGRDVVLLLEHKVKTQAALVDACRLMRAALREALAQGAPKEEIEGQEK
PGGEVDELHSLTEKLRQLASGKTAEDLGKEGRAKARHGGKRWLRAWHKLR
FFLEWSCSWDGEHHEDGQEVVGRAFRTKFEQALHEHELLLVRGEV back to topmRNA from alignment at CM002466.1:612634..614920+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5699 ID=rna5699|Name=rna5699|organism=Nannochloropsis gaditana|type=mRNA|length=2287bp|location=Sequence derived from alignment at CM002466.1:612634..614920+ (Nannochloropsis gaditana)
GGATACCCGGCGTCTGTCGAGTCCCCATCACTAGCAGGGACAACGTTGCG
GATAATTTTACCGGGCGTCTCGTGTTTAATTTCACACCACAGACAGGGCG
GAAATGGCGTCATTGCACATCGTCAAGAAAACTCTTCCTGGGAAAGTGTC
AGTCCGAAAGACGGACTTATTGCCCTGCCCTGCCGACAGCTTCAAGTCGG
AAGACAATGTACTGCTTCGCGGTCCCACGCGGCGGATTTGTCTGGTTTGC
AAGTCTAAATCCTCGGCATATGCCTGCCCCCGTTGTAGCACGCCTTATTG
CTCCGCAGTTTGCTACAAAGGGCACAATCAGGAATGCACGGAAGGTTTCT
ACCGGCATCACGTCGAGGAAGTAATACGTCTTCgtcaggcggaggaggtt
ggagcaGGCATACCTCCCGGGGGCAAGGCGGCGAAACGTGCCACGATCAA
CGCTTTAAGGCGCGTCCGACTACAGACTGATGAGACGGAAGCATTTTGCT
CTGGCGTGGGAGGCGATCGCCTGGAGGAGTTGTGGGCACGCAAAGACTCG
TTGGACCTAGAAGCGTTAACACGGGAAGAGCAACGCGCCTTTTTAGCGTC
GGTGGCAAACGGGGATTTGTCGAGAGACATTGAGATTTGGACACCGTGGT
GGACCCAGGGAGGAGTGTCTGAGGGAGGTCAGCCGTTGGtgagggtggag
agagacGGTCTTGGGTCCGACGGGGGAAACAgcaaaggcgggaaaggagg
cgctACCTCCGATAGGCCGATAGATTTCACGTCTTTGCACGAAGAGCTCC
AGCGTCTGAAAAAGAGGATGGGTTTTCCCGTCCTAAGGCCTTTCCTCACC
TCCAGTGTCTCTCCACATCTCCCTTACCATCTACTCGACATTTTGTTCGC
CTACACTTGCGTCCTTCGCACGTACAATGGGGCTTGCGGCCTCGTCCCGG
AAGATGCAGCCGAcgacctcctcgctctctcgcCCGTTTTGCGATACCGT
CTTCGGACGGGAGCGGAAGCGGGGCTGGTCCGACTCGAGTCCGCGCGCGG
GGCGCTTGCCAGTTCCTTGGAGGCACTGCGGCGATGGCAATTGCTGCAGG
GTCCTGCGCCCTGCGCTTCGTCTACTGGAATGTCGAGCTCGTTGGCCATG
GGATTGGCCGCGGGTCGGGACGTGGTGTTGCTCCTGGAGCACAAGGTGAA
GACACAGGCGGCTTTGGTGGATGCTTGCCGCTTAATGCGGGCGGCATTGC
GGGAGGCACTCGCCCAGGGGGCGCCGAAAGAAGAGATcgaggggcaggag
aagccCGGCGGGGAAGTTGACGAGCTTCATTCATTGACCGAAAAATTGAG
GCAGCTCGCATCGGGTAAGACAGCCGAAGActtggggaaggaggggagag
cgaaAGCGCGGCATGGGGGAAAGCGGTGGTTACGGGCCTGGCACAAGCTA
CGCTTCTTCTTGGAATGGTCTTGTTCATGGGACGGAGAGCATCATGAGGA
CGGACAGGAGGTAGTAGGGCGAGCTTTCCGTACGAAGTTTGAACAGGCTT
TGCATGAACACGAGCTGTTGCTCGTTCGAGGTGAAGtttgaggaaggaag
aagggtaCGACGGACGTTCTTTGAGAGAGTCACACGCTTTATAGACCACA
GTTGACAGTGTACGAAGTGTAAAATGCCATGAACATAAAGGGAAATTTGA
GGAACATGACAATGTTGTGGAATGTGTGGAGGACACTACTGAATATGATG
GGACAGTCGCTCTTAAACGTTCACAAAGAATTCCATgactttcttcttgt
ccgAGATATTTCATGCATTTATCGTAGGTCTTGAAACCtcggtgaaggag
gagatgtaATTTTTGAGCGCCAGTGCCTTATTACGCAGCGCAAACATCCG
AAAACCCCTCCTACTTCTTGACTGCACACCCGGTAACCGGATTCGAAAAT
TGCACGGCATATTAAATTTTCCCACTAGAAAATGAAGTTGCTTAGTTAAT
CGATTGATCATGCCGTGAAAATCTCCCCATATGGACGTAATCACACCAAC
ACACTCGATCcgcagcagggaggaaaggtatGTGTTTAAGCGAACCAATT
GGAAGAAAATGTCAAAGCCAGAGTCTTTGTGCACGATAGATAAGCCTCAA
GAGGGATTGGAAGGGCAACAGGATGAAGAGCGGAGAGCGAGCGGACAGGA
TTGTAAATTTCGTATTGTAATCAGTGGGGCAATGCAAGTTTTGACGGCCA
AAGCGCCGACTCAGGCTGTCCAGCACCGAAGAACGTC back to topCoding sequence (CDS) from alignment at CM002466.1:612634..614920+ >rna5699 ID=rna5699|Name=rna5699|organism=Nannochloropsis gaditana|type=CDS|length=1488bp|location=Sequence derived from alignment at CM002466.1:612634..614920+ (Nannochloropsis gaditana)
ATGGCGTCATTGCACATCGTCAAGAAAACTCTTCCTGGGAAAGTGTCAGT
CCGAAAGACGGACTTATTGCCCTGCCCTGCCGACAGCTTCAAGTCGGAAG
ACAATGTACTGCTTCGCGGTCCCACGCGGCGGATTTGTCTGGTTTGCAAG
TCTAAATCCTCGGCATATGCCTGCCCCCGTTGTAGCACGCCTTATTGCTC
CGCAGTTTGCTACAAAGGGCACAATCAGGAATGCACGGAAGGTTTCTACC
GGCATCACGTCGAGGAAGTAATACGTCTTCgtcaggcggaggaggttgga
gcaGGCATACCTCCCGGGGGCAAGGCGGCGAAACGTGCCACGATCAACGC
TTTAAGGCGCGTCCGACTACAGACTGATGAGACGGAAGCATTTTGCTCTG
GCGTGGGAGGCGATCGCCTGGAGGAGTTGTGGGCACGCAAAGACTCGTTG
GACCTAGAAGCGTTAACACGGGAAGAGCAACGCGCCTTTTTAGCGTCGGT
GGCAAACGGGGATTTGTCGAGAGACATTGAGATTTGGACACCGTGGTGGA
CCCAGGGAGGAGTGTCTGAGGGAGGTCAGCCGTTGGtgagggtggagaga
gacGGTCTTGGGTCCGACGGGGGAAACAgcaaaggcgggaaaggaggcgc
tACCTCCGATAGGCCGATAGATTTCACGTCTTTGCACGAAGAGCTCCAGC
GTCTGAAAAAGAGGATGGGTTTTCCCGTCCTAAGGCCTTTCCTCACCTCC
AGTGTCTCTCCACATCTCCCTTACCATCTACTCGACATTTTGTTCGCCTA
CACTTGCGTCCTTCGCACGTACAATGGGGCTTGCGGCCTCGTCCCGGAAG
ATGCAGCCGAcgacctcctcgctctctcgcCCGTTTTGCGATACCGTCTT
CGGACGGGAGCGGAAGCGGGGCTGGTCCGACTCGAGTCCGCGCGCGGGGC
GCTTGCCAGTTCCTTGGAGGCACTGCGGCGATGGCAATTGCTGCAGGGTC
CTGCGCCCTGCGCTTCGTCTACTGGAATGTCGAGCTCGTTGGCCATGGGA
TTGGCCGCGGGTCGGGACGTGGTGTTGCTCCTGGAGCACAAGGTGAAGAC
ACAGGCGGCTTTGGTGGATGCTTGCCGCTTAATGCGGGCGGCATTGCGGG
AGGCACTCGCCCAGGGGGCGCCGAAAGAAGAGATcgaggggcaggagaag
ccCGGCGGGGAAGTTGACGAGCTTCATTCATTGACCGAAAAATTGAGGCA
GCTCGCATCGGGTAAGACAGCCGAAGActtggggaaggaggggagagcga
aAGCGCGGCATGGGGGAAAGCGGTGGTTACGGGCCTGGCACAAGCTACGC
TTCTTCTTGGAATGGTCTTGTTCATGGGACGGAGAGCATCATGAGGACGG
ACAGGAGGTAGTAGGGCGAGCTTTCCGTACGAAGTTTGAACAGGCTTTGC
ATGAACACGAGCTGTTGCTCGTTCGAGGTGAAGtttga back to top
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