|
|
Properties
| Property Name | Value |
|---|
| Product | eukaryotic translation initiation factor iso4e |
| Orig transcript id | gnl|cribi|Naga_100122g15.3565.mrna |
| Orig protein id | gnl|cribi|Naga_100122g15.3565 |
| Gbkey | mRNA |
| Note | encoded by transcript variant 1; alternatively spliced |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:610736..612406 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5697 ID=rna5697|Name=rna5697|organism=Nannochloropsis gaditana|type=mRNA|length=4253bp
ACATAGGAAATTTAATAGGTACAAAGATGGCTGCGGCGACGTCCCCAGAC
TTAGCTCCTGACTATCCACGCTTCGTCCGTGGGCGAGACTCCACCCTAGC
CTACTTTCATAAGCTCTTCCGGGAGCGCATCGTAATTTACGATGGAGCGA
TGGGCACAATGATTCAGAAACATCGGCTGTCGGAAGAGGACTATCGGGGG
GAGCGGTTCAAGGATTACCACAAGCTGGTACGCGGGAACAACGACTTACT
TTCCCTGACGCAGCCTGCCATCATCAAGGAGATCCACCGCAAATATCTCA
AGGCCGGTGCGGACTTGATTGGAACGAACACATTTTCCTCTACCACCATT
GCCCAAGCTGATTATGACATGGAAAAATTGGCGTTCGAACTCAATGTTGA
ATCTGCTCGTATCGCGCGAGAGGCGGCCGATGAAGTTACTGCCGAGGAGC
CTGACAAGCCGCGATTCGTGGGTGGCTCTATCGGACCGACCAATCGAACT
GCTTCTATCTCTCCTGATGTCGTGGATGCTTCCAAGCGTAACGTGACTTT
CGATGAACTCGACGAAGCCTACTACGAGGAGGCCCGTGGTCTCTTGGACG
GAGGGTGCGATTTTATTATCATCGAAACGATATTCGACACTCTCAACGCC
AAGGCAGCGATTTTTGCTGTGCGACGTCTTTTCAAAGAGCGAGGAGTGGA
AGATACAATGCCGTTGATCGTCTCCGGAACTCTGGTGGACCAAAGCGGGC
GGACTCTGTCCGGGCAGACCACGGAGGCATTCTACGTGAGTGTCCGACAC
TGCAACCCTTTTTGTGTGGGCCTGAACTGTGCATTGGGCGCCAAGCAGAT
GCGACCTTTCTTGCAACGACTGAGTAAAGTGGCTGAGTGCTTCGTCTCAG
TATACTCGAATGCCGGGCTTCCCAATGCCATGGGCGGATACGATGACACT
CCGGCGGACATGGCGGCCGATAACTCGGTCTTTGTCAAGGAGCAGTTGGT
GAACATGATTGGTGGTTGCTGCGGCTCGACCCCGGAGCATATCAATGCCA
TTGCCAAGATGACAGAGGGACAGCCCCCCCGACCTGTGGCGCAGAAGCAG
CAGCACATGTGGTTGTCGGGCCTGGAGGACTTGATCGTCTCGAAAGACCG
CTTTCAATTCCTCAACGTGGGAGAGCGGTGCAATATTGCCGGGTCTCCGC
TCTTCAAGCGCTTAATTTTGGCTGGCGACTACGCCAAGGCCATGGACATC
GCCAAGAAGCAGGTGGAGGACGGTGCGATGGTGCTGGACGTGAATATGGA
CGAAGGCCTCCTGGACGGGCTGGCGGCCATGCAACGCTTCTTGAAGATCG
CCATGACGGAGCCGGAGTGCAGTAAAGTGCCCATCATGGTGGACTCCTCC
AAATTCGAGATCATTGAGGCGGGTTTGAAGTGGGTGCAGGGGAAGTGTAT
CGTCAACTCCATTTCGTTGAAGGTGGGCGAGGAGGAGTTCAAGCGGCAGG
CGGCGATAGTCAAGGCGCATGGGGCCGCCGTGGTGGTGATGGCTTTCGAC
GAGGAAGGCCAGGCCGCGGATGAGTACAATAAGATTCGCATCTGTAAGCG
ATCTTACGACATGCTTGTCAATGAAGTAGGATTCCCGCCCGAAGACATCG
TTTTCGACCCGAATATCTTGACTATCGCTACTGGTATCGAGGAGCATAAT
AATTACGCAGTGGATTTTATCAAAGCTTGCAAAAAAATCAAGGAGGAATG
CCCCCACGCAAAGATATCGGGAGGCGTCTCCAACCTGTCGTTTGGCTTTC
GGGGTGTGAACGTGATCCGGGAGGCCATGCACAGTGTCTTTTTGTACCAC
GCCGTGCAGGCAGGGATGGACATGGGTATTGTCAACGCTGGATTGCTGCA
GGTCTACAGCGACATAGCACCAGACTTGCTTCAGGTGGTAGAAGATGCGG
TTTTGAACCGGCACGAGGGGGCGACAGAGGCGCTTTTAGAACGTTCCATG
GTGGAGCGGGAAAAAGCTTTGGCCAACAAGGGCCAGGCGACTCAAACGCA
AGCGCAGTGGCGATCGTTGGGTGTGCAGGAGCGTCTCACCCACGCGCTGG
TGAAAGGCATCGACGAGTTCATCGACGGAGACGTGGAGGAATGTCGGCAG
CTGGTGTCCCGGCCTTTAGAGGTGATCGAGGGGCCCTTGATGTCGGGCAT
GAATGTGGTGGGGGACCTCTTTGGTTCCGGCAAGATGTTCCTACCGCAGG
TCATCAAGTCGGCGCGTGTGATGAAGAAGGCAGTGGCTTACTTGTTGCCT
TTCATGGAGAAGGAGAAAGAAGAGCGGCTGAAAGAGCAGGGGATTGCCGA
GGTAGCGAATGACGACAGCGCCTATGCGGGGGTGGTGCTGCTGGCCACGG
TCAAGGGTGACGTGCATGACATTGGGAAAAATATCGTCGGGGTTGTGCTT
GGTTGCAACAACTATAAGGTGTACGACATGGGTGTCATGATACCGTGCGA
AAAAATCATCGAGCGCGCTTTGGAAGTGAAGGCCCAAGTGATCGGGCTGT
CGGGCTTGATCACACCTTCTCTGGACGAAATGGTCTTCGTCGCCAAGGAG
ATGAGCAAAGCGGGGATGAAAGTACCACTGTTGATAGGCGGGGCGACGAC
GAGCAAGATGCACACGGCCGTGAAGATTGCACCCAATTACAGCACCCTGG
AGCATCCGTGTATCCATGTCCTGGACGCTTCTCGAAGCGTGACAGTGGTG
GGATCCTTGCTGGGGGACGACAAAGAGGAATACGTGCACGACATCCTGGA
CGAGTACGATGAGCTCCGGGAGGAGCACTACGCAGGTTTGGAGGAGAGGC
ACATGAAGGCCTTCGAGGCGGCGAAGAAGCTGGGACTGAACATCAATTTC
GACGCATCGCCTCCCGTGTGCCCGCCGGCCGGAGGTTTGGGTGTGAAAGT
GGTGGACTACTACTCCCTGGAGGACGTGGTTCCTTTCATCGACTGGAACC
CTTTTTTCCAGACTTGGGAGCTTAGAGGAAAATATCCGAACCGAGGCTAC
CCACGCATCTTCAACGACGAGACGGTAGGAGCAGAAGCGCAGAAACTCTT
CGACGATGCACAGGCGCTCTTGAAGGACCTGGTGGACAACAGACGCTTGC
AGTTGAAAGGTGTCATGGGCGTCTTCCCTGCAGCGCGGGTCGGCGAGGAC
GTGGAAGTCTACGCCGAGGAGGAGGAGAGGGTGGAAGGAGGCGCAGCGAT
CGGGAAGTTTTGCATGTTGCGCCAGCAGCAGGAGAAAGAGTCGGACGATC
CCTATTTTTCTCTAGCTGACTTTGTCGCGGCGAAGGAGAGCGGGCACAAG
GATTATTTGGGCGCCTTTGCTGTGGCATGCTTTGGGGCGGACGAGGAGGT
TGCTAAATTTGAGGCGCAGAACGATGACTATAACAAGATTATGGTGCAGG
CGCTAGCAGATCGATTCGTGGAAGCCTTTGCGGAGGCTTTACATCGAGAA
ATTCGTATGAAGACGTGGGGCTATGCACCGGATGAAGAGCTGAACCCTGA
GGACCTGCTCAAAATCAAATATGATGGAATCCGACCCGCGCCAGGATATC
CATCTCAGCCGGATCACACGGAAAAGAAATTCATGTGGGAGCTGCTCAAG
GCGCAGGAGCTTGCGGGCATCGGTTTGACAGAGAGTCTGTCGATGACTCC
GGCGTCCTCTGTGAGTGCTTTGGTTTTCGCTCATCCAGAAAGCCAATATT
TCGCAGTGGGTAAGATTGAGAAGGACCAAGTCGAGGACTACGCTGCAAGG
AAGGGCATGGCAGTGGAAGAAGTAGAGAGATGGTTGGCGCCGATTCTGAA
CTATGACCAGGATTAGGAGTAAGGAGGAATTGTGAGATGTAAAGCATTGA
AAGGGTGAAGTGGAGATTGGGAATTGATATGGAGGCTGAGTTGAAATGTG
TTATAGTCGTATTACAGCACATCCAAATTGAGAAATAGGAGAGATGAGTC
GTGAGCAGTCAATCGGATCAATCAAGAGGCAAAAAGAGGATATCAGTCGA
GGCTGGGAGAGATAAGACTGGTGGGAGGATATAGGTTAGCGAGGAACTGA
GGGGATGTGGCTATGGTGGTTTGAATAAGTGCATGTGCAAGTCTTCCCGA
TTATTCAAAATCAACGAGGCTTAATACTTTCGTAAGACGGGCGAAGAAAA
ATGCAGCTTACCCATTGAAAATATCGTACAACAAGCACATGGCATGTCTC
AGT back to topprotein sequence of rna5697 >rna5697-protein ID=rna5697-protein|Name=rna5697|organism=Nannochloropsis gaditana|type=polypeptide|length=277bp
MNARESCSKHIHLGLWPLVAFRECFWVLLSDFWEGVFTLFSIAYYFSLKT
NPLTLMSAEPLVQKAVDVNCSGSVMDGDTEGSCSSKPTDGETDKHVLQNR
WSFFYNNPKANPMLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQAD
YYLFKEGVRPSYEENPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETME
DSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSLDLPPETK
LEFKPNQKVAEAGGSMSSAQDVKGYTV back to topmRNA from alignment at CM002466.1:610736..612406+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna5697 ID=rna5697|Name=rna5697|organism=Nannochloropsis gaditana|type=mRNA|length=1671bp|location=Sequence derived from alignment at CM002466.1:610736..612406+ (Nannochloropsis gaditana)
gttgctgtccctcccttctcctcctttccccccccatgAATGCCCGTGAA
TCCTGCTCAAAACATATTCATCTTGGCCTCTGGCCATTGGTTGCCTTTCG
AGAGTGCTTTTGGGTGCTTCTATCCGATTTCTGGGAAGGTGTGTTTACTC
TTTTTTCGATCGCATATTATTTCTCTCTCAAGACAAACCCGCTCACGCTG
ATGAGCGCCGAACCCCTTGTCCAAAAAGCCGTGGACGTCAATTGTAGTGG
CAGCGTGATGGACGGGGACACAGAAGGTAGTTGTAGCAGCAAGCCGACAG
ATGGTGAGACCGACAAGGTATGGCATATTTAGTTAGTTCACGGGTGGGGT
GAGGATACATGAGATATGGCTGCTACAAGACGAAAAACCTCTTCATGAGG
CAATCCATGTGTTCGTATGTCATCGCAAGAAGTGGATTTGTATGTGATAT
ACGTATGCGCCCTGGGACTCTTTACCAGAATAGAGATTGTTAAGCACCCT
GAGATGAGATACGGGGGTTTCTTGCGGACTTGAAATGAAATACGCGCACC
TGTCTGCACACGTATCATCGTGGTGGGCGGTACAGCGTCCTTTTCAAAAT
TTAATATCATGGCAGAGCACATATTTCGGTACATGTGTATTAGGTCTCTT
GTTAGAGACGAACGTCTATCGCTAGGACAAGTTATGTGGAATGTCACATC
TTCCGGCTCAGCTCTCTCTTGCACGCTCATTCCACATCTATTTTTTAGCA
TGTGTTGCAAAATAGGTGGTCCTTCTTCTACAATAACCCAAAGGCCAACC
CAATGCTGTCTTGGGAGGAAAAGCTTCAGAAAATCTACACGTTCGAGACG
GTGGAAGATTTTTGGGCCCTGTTCAATTCCGTTGTCGGCCCTTCCCGCTT
GAGTATACAGGCCGACTATTATCTGTTTAAAGAGGGAGTCCGGCCCTCAT
ACGAGGAGAATCCTGAAGGTGGCGTGTGGATGTTTAATCTGGAAAAGGGA
AACAAGaagcgcttggaggaggtctgGTTGTATCTAGTCCTAGGTCTGAT
CGGAGAGACGATGGAGGATTCTAACGACATTCTGGGAGCGGTCGTGAGCA
TCAAGAGGGGACAAGACAGGCTGTCGCTATGGACGAAGACTGCCGCGGAC
AAGGAACTGCAAGTTCGGATTGCTACGAGGGTGAAGATGAGCTTGGACCT
GCCACCGGAGACCAAATTGGAGTTTAAACCAAATCAGAAGGTGAGGCAGA
GAGATGAATGCCAGATAAGGGGTTAAGGGTCTTTTAGAAGTCCACATGGT
TGCATTTAGCCGCTTATCGTTGAATCAAGGCGTACTCAATTGTTAAATTT
CTCATTTTATGCTGCAGGTGGCCGAAGCGGGGGGCTCCATGTCATCAGCG
CAGGACGTGAAGGGCTACACTGTATAACCCTTGACACCCTACCATACAGT
ATTCAAATGCAAACGGAGAACCCCACATTTCTGCAGTTGACCGGGTTCGG
AGCGTGCTGAAATTTGTACAGGCATAACGAAAACAAGGAACCCCGCACAC
TCTGCTGCATAAGTTTGGAAAGAATTTGTGCGGAAGGATCGATTGACGTG
CCATATCACTTGTTCTTGTTAAAAATGACAATTATTTGTGAGCTTCCTTA
ATTTCAAAAACTCATAGCCTA back to topCoding sequence (CDS) from alignment at CM002466.1:610736..612406+ >rna5697 ID=rna5697|Name=rna5697|organism=Nannochloropsis gaditana|type=CDS|length=2502bp|location=Sequence derived from alignment at CM002466.1:610736..612406+ (Nannochloropsis gaditana)
atgAATGCCCGTGAATCCTGCTCAAAACATATTCATCTTGGCCTCTGGCC
ATTGGTTGCCTTTCGAGAGTGCTTTTGGGTGCTTCTATCCGATTTCTGGG
AAGGTGTGTTTACTCTTTTTTCGATCGCATATTATTTCTCTCTCAAGACA
AACCCGCTCACGCTGATGAGCGCCGAACCCCTTGTCCAAAAAGCCGTGGA
CGTCAATTGTAGTGGCAGCGTGATGGACGGGGACACAGAAGGTAGTTGTA
GCAGCAAGCCGACAGATGGTGAGACCGACAAGCATGTGTTGCAAAATAGG
TGGTCCTTCTTCTACAATAACCCAAAGGCCAACCCAATGCTGTCTTGGGA
GGAAAAGCTTCAGAAAATCTACACGTTCGAGACGGTGGAAGATTTTTGGG
CCCTGTTCAATTCCGTTGTCGGCCCTTCCCGCTTGAGTATACAGGCCGAC
TATTATCTGTTTAAAGAGGGAGTCCGGCCCTCATACGAGGAGAATCCTGA
AGGTGGCGTGTGGATGTTTAATCTGGAAAAGGGAAACAAGaagcgcttgg
aggaggtctgGTTGTATCTAGTCCTAGGTCTGATCGGAGAGACGATGGAG
GATTCTAACGACATTCTGGGAGCGGTCGTGAGCATCAAGAGGGGACAAGA
CAGGCTGTCGCTATGGACGAAGACTGCCGCGGACAAGGAACTGCAAGTTC
GGATTGCTACGAGGGTGAAGATGAGCTTGGACCTGCCACCGGAGACCAAA
TTGGAGTTTAAACCAAATCAGAAGGTGGCCGAAGCGGGGGGCTCCATGTC
ATCAGCGCAGGACGTGAAGGGCTACACTGTATAAatgAATGCCCGTGAAT
CCTGCTCAAAACATATTCATCTTGGCCTCTGGCCATTGGTTGCCTTTCGA
GAGTGCTTTTGGGTGCTTCTATCCGATTTCTGGGAAGGTGTGTTTACTCT
TTTTTCGATCGCATATTATTTCTCTCTCAAGACAAACCCGCTCACGCTGA
TGAGCGCCGAACCCCTTGTCCAAAAAGCCGTGGACGTCAATTGTAGTGGC
AGCGTGATGGACGGGGACACAGAAGGTAGTTGTAGCAGCAAGCCGACAGA
TGGTGAGACCGACAAGCATGTGTTGCAAAATAGGTGGTCCTTCTTCTACA
ATAACCCAAAGGCCAACCCAATGCTGTCTTGGGAGGAAAAGCTTCAGAAA
ATCTACACGTTCGAGACGGTGGAAGATTTTTGGGCCCTGTTCAATTCCGT
TGTCGGCCCTTCCCGCTTGAGTATACAGGCCGACTATTATCTGTTTAAAG
AGGGAGTCCGGCCCTCATACGAGGAGAATCCTGAAGGTGGCGTGTGGATG
TTTAATCTGGAAAAGGGAAACAAGaagcgcttggaggaggtctgGTTGTA
TCTAGTCCTAGGTCTGATCGGAGAGACGATGGAGGATTCTAACGACATTC
TGGGAGCGGTCGTGAGCATCAAGAGGGGACAAGACAGGCTGTCGCTATGG
ACGAAGACTGCCGCGGACAAGGAACTGCAAGTTCGGATTGCTACGAGGGT
GAAGATGAGCTTGGACCTGCCACCGGAGACCAAATTGGAGTTTAAACCAA
ATCAGAAGGTGGCCGAAGCGGGGGGCTCCATGTCATCAGCGCAGGACGTG
AAGGGCTACACTGTATAAatgAATGCCCGTGAATCCTGCTCAAAACATAT
TCATCTTGGCCTCTGGCCATTGGTTGCCTTTCGAGAGTGCTTTTGGGTGC
TTCTATCCGATTTCTGGGAAGGTGTGTTTACTCTTTTTTCGATCGCATAT
TATTTCTCTCTCAAGACAAACCCGCTCACGCTGATGAGCGCCGAACCCCT
TGTCCAAAAAGCCGTGGACGTCAATTGTAGTGGCAGCGTGATGGACGGGG
ACACAGAAGGTAGTTGTAGCAGCAAGCCGACAGATGGTGAGACCGACAAG
CATGTGTTGCAAAATAGGTGGTCCTTCTTCTACAATAACCCAAAGGCCAA
CCCAATGCTGTCTTGGGAGGAAAAGCTTCAGAAAATCTACACGTTCGAGA
CGGTGGAAGATTTTTGGGCCCTGTTCAATTCCGTTGTCGGCCCTTCCCGC
TTGAGTATACAGGCCGACTATTATCTGTTTAAAGAGGGAGTCCGGCCCTC
ATACGAGGAGAATCCTGAAGGTGGCGTGTGGATGTTTAATCTGGAAAAGG
GAAACAAGaagcgcttggaggaggtctgGTTGTATCTAGTCCTAGGTCTG
ATCGGAGAGACGATGGAGGATTCTAACGACATTCTGGGAGCGGTCGTGAG
CATCAAGAGGGGACAAGACAGGCTGTCGCTATGGACGAAGACTGCCGCGG
ACAAGGAACTGCAAGTTCGGATTGCTACGAGGGTGAAGATGAGCTTGGAC
CTGCCACCGGAGACCAAATTGGAGTTTAAACCAAATCAGAAGGTGGCCGA
AGCGGGGGGCTCCATGTCATCAGCGCAGGACGTGAAGGGCTACACTGTAT
AA back to top
|