EWM24978.1, cds5682 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM24978.1 vs. NCBI_GenBank
Match: gi|585106611|gb|EWM24978.1| (eukaryotic translation initiation factor iso4e [Nannochloropsis gaditana]) HSP 1 Score: 575.089 bits (1481), Expect = 0.000e+0 Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0
Query: 1 MNARESCSKHIHLGLWPLVAFRECFWVLLSDFWEGVFTLFSIAYYFSLKTNPLTLMSAEPLVQKAVDVNCSGSVMDGDTEGSCSSKPTDGETDKHVLQNRWSFFYNNPKANPMLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEENPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSLDLPPETKLEFKPNQKVAEAGGSMSSAQDVKGYTV 277
MNARESCSKHIHLGLWPLVAFRECFWVLLSDFWEGVFTLFSIAYYFSLKTNPLTLMSAEPLVQKAVDVNCSGSVMDGDTEGSCSSKPTDGETDKHVLQNRWSFFYNNPKANPMLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEENPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSLDLPPETKLEFKPNQKVAEAGGSMSSAQDVKGYTV
Sbjct: 1 MNARESCSKHIHLGLWPLVAFRECFWVLLSDFWEGVFTLFSIAYYFSLKTNPLTLMSAEPLVQKAVDVNCSGSVMDGDTEGSCSSKPTDGETDKHVLQNRWSFFYNNPKANPMLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEENPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSLDLPPETKLEFKPNQKVAEAGGSMSSAQDVKGYTV 277
BLAST of EWM24978.1 vs. NCBI_GenBank
Match: gi|585106612|gb|EWM24979.1| (eukaryotic translation initiation factor iso4e [Nannochloropsis gaditana]) HSP 1 Score: 336.265 bits (861), Expect = 5.797e-115 Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0
Query: 113 MLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEENPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSLDLPPETKLEFKPNQKVAEAGGSMSSAQDVKGYTV 277
MLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEENPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSLDLPPETKLEFKPNQKVAEAGGSMSSAQDVKGYTV
Sbjct: 1 MLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEENPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSLDLPPETKLEFKPNQKVAEAGGSMSSAQDVKGYTV 165
BLAST of EWM24978.1 vs. NCBI_GenBank
Match: gi|695463260|ref|XP_009538670.1| (hypothetical protein PHYSODRAFT_566314 [Phytophthora sojae] >gi|348665981|gb|EGZ05809.1| hypothetical protein PHYSODRAFT_566314 [Phytophthora sojae]) HSP 1 Score: 176.407 bits (446), Expect = 7.092e-51 Identity = 84/194 (43.30%), Postives = 128/194 (65.98%), Query Frame = 0
Query: 88 TDGETDKHVLQNRWSFFYNNPKA-NPMLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEE--NPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSL-DLPPETKLEFKPNQKVAEAGGSMSSAQDVKGYTV 277
D KH LQNRW +Y+NPK N SWEE L+ +YTF TVEDFW L+N+++ P++LSI ++Y+LFKEG+RP +E+ N +GG W+F + K RL+E WLY++L LIGET++D +D+ GAVVS+++ QDR+++W+ TA ++ Q I + +L DL L+++ + A +G S + V Y +
Sbjct: 27 VDDVATKHPLQNRWVLWYDNPKKRNSNESWEENLKNVYTFNTVEDFWCLYNNILAPTKLSIGSNYHLFKEGIRPMWEDPINAKGGKWIFTNPRSRKARLDECWLYVMLSLIGETLQDEDDVCGAVVSVRKAQDRIAIWSATANAEDRQKAIGRGFRQALVDLGKNETLKYQSHADAAASGSSFQNEVYVLRYQI 220
BLAST of EWM24978.1 vs. NCBI_GenBank
Match: gi|675173023|ref|XP_008895396.1| (hypothetical protein PPTG_04839 [Phytophthora parasitica INRA-310] >gi|566015505|gb|ETI38416.1| hypothetical protein F443_15818 [Phytophthora parasitica P1569] >gi|567952955|gb|ETK78618.1| hypothetical protein L915_15374 [Phytophthora parasitica] >gi|567981612|gb|ETL32049.1| hypothetical protein L916_15268 [Phytophthora parasitica] >gi|568011119|gb|ETL85297.1| hypothetical protein L917_15090 [Phytophthora parasitica] >gi|568104918|gb|ETN19563.1| hypothetical protein PPTG_04839 [Phytophthora parasitica INRA-310] >gi|570319241|gb|ETO67189.1| hypothetical protein F444_15798 [Phytophthora parasitica P1976] >gi|570943043|gb|ETP08300.1| hypothetical protein F441_15651 [Phytophthora parasitica CJ01A1] >gi|570973828|gb|ETP36353.1| hypothetical protein F442_15659 [Phytophthora parasitica P10297]) HSP 1 Score: 174.096 bits (440), Expect = 2.547e-50 Identity = 81/179 (45.25%), Postives = 125/179 (69.83%), Query Frame = 0
Query: 94 KHVLQNRWSFFYNNPKA-NPMLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEE--NPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSL-DLPPETKLEFKPNQKVAEAGGSMSS 268
KH LQNRW +Y+NPK + SWEE L+ +YTF TVEDFW L+N+++ P++LSI ++Y+LFKEG+RP +E+ N +GG W+F + K RL+E WLY++L LIGET++D +DI GAVVS+++ QDR+++W+ TA+ ++ Q I + +L DL L+++ + A +G S +
Sbjct: 38 KHPLQNRWVLWYDNPKKRHSTESWEENLKNVYTFNTVEDFWCLYNNILTPTKLSIGSNYHLFKEGIRPMWEDPVNAKGGKWIFTNPRSRKARLDECWLYVMLSLIGETLQDEDDICGAVVSVRKAQDRIAIWSATASAEDRQKAIGRGFRQALVDLGKNETLKYQSHADAAASGSSFQN 216
BLAST of EWM24978.1 vs. NCBI_GenBank
Match: gi|568041025|gb|ETM38449.1| (hypothetical protein L914_15227 [Phytophthora parasitica]) HSP 1 Score: 174.096 bits (440), Expect = 3.410e-50 Identity = 81/179 (45.25%), Postives = 125/179 (69.83%), Query Frame = 0
Query: 94 KHVLQNRWSFFYNNPKA-NPMLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEE--NPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSL-DLPPETKLEFKPNQKVAEAGGSMSS 268
KH LQNRW +Y+NPK + SWEE L+ +YTF TVEDFW L+N+++ P++LSI ++Y+LFKEG+RP +E+ N +GG W+F + K RL+E WLY++L LIGET++D +DI GAVVS+++ QDR+++W+ TA+ ++ Q I + +L DL L+++ + A +G S +
Sbjct: 38 KHPLQNRWVLWYDNPKKRHSTESWEENLKNVYTFNTVEDFWCLYNNILTPTKLSIGSNYHLFKEGIRPMWEDPVNAKGGKWIFTNPRSRKARLDECWLYVMLSLIGETLQDEDDICGAVVSVRKAQDRIAIWSATASAEDRQKAIGRGFRQALVDLGKNEMLKYQSHADAAASGSSFQN 216
BLAST of EWM24978.1 vs. NCBI_GenBank
Match: gi|970630899|gb|KUF77704.1| (Eukaryotic translation initiation factor 4E [Phytophthora nicotianae]) HSP 1 Score: 174.481 bits (441), Expect = 3.527e-50 Identity = 81/179 (45.25%), Postives = 125/179 (69.83%), Query Frame = 0
Query: 94 KHVLQNRWSFFYNNPKA-NPMLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEE--NPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSL-DLPPETKLEFKPNQKVAEAGGSMSS 268
KH LQNRW +Y+NPK + SWEE L+ +YTF TVEDFW L+N+++ P++LSI ++Y+LFKEG+RP +E+ N +GG W+F + K RL+E WLY++L LIGET++D +DI GAVVS+++ QDR+++W+ TA+ ++ Q I + +L DL L+++ + A +G S +
Sbjct: 38 KHPLQNRWVLWYDNPKKRHSTESWEENLKNVYTFNTVEDFWCLYNNILTPTKLSIGSNYHLFKEGIRPMWEDPVNAKGGKWIFTNPRSRKARLDECWLYVMLSLIGETLQDEDDICGAVVSVRKAQDRIAIWSATASAEDRQKAIGRGFRQALVDLGKNETLKYQSHADAAASGSSFQN 216
BLAST of EWM24978.1 vs. NCBI_GenBank
Match: gi|301118596|ref|XP_002907026.1| (eukaryotic initiation factor 4E, putative [Phytophthora infestans T30-4] >gi|262108375|gb|EEY66427.1| eukaryotic initiation factor 4E, putative [Phytophthora infestans T30-4]) HSP 1 Score: 174.096 bits (440), Expect = 3.643e-50 Identity = 81/179 (45.25%), Postives = 124/179 (69.27%), Query Frame = 0
Query: 94 KHVLQNRWSFFYNNPKA-NPMLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEE--NPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSL-DLPPETKLEFKPNQKVAEAGGSMSS 268
KH LQNRW +Y+NPK + SWEE L+ +YTF TVEDFW L+N+++ P++LSI ++Y+LFKEG+RP +E+ N +GG W+F + K RL+E WLY++L LIGET++D +DI GAVVS+++ QDR+++W+ TA ++ Q I + +L DL L+++ + A +G S +
Sbjct: 35 KHPLQNRWVLWYDNPKKRHSTESWEENLKNVYTFNTVEDFWCLYNNILAPTKLSIGSNYHLFKEGIRPMWEDPINAKGGKWIFTNPRSRKARLDECWLYVMLSLIGETLQDEDDICGAVVSVRKAQDRIAIWSATANAEDRQKAIGRGFRQALVDLGKNETLKYQSHADAAASGSSFQN 213
BLAST of EWM24978.1 vs. NCBI_GenBank
Match: gi|1214693640|gb|OWZ07907.1| (Eukaryotic initiation factor 4E [Phytophthora megakarya]) HSP 1 Score: 172.17 bits (435), Expect = 2.842e-49 Identity = 79/179 (44.13%), Postives = 124/179 (69.27%), Query Frame = 0
Query: 94 KHVLQNRWSFFYNNPKA-NPMLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEE--NPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSL-DLPPETKLEFKPNQKVAEAGGSMSS 268
KH LQNRW +Y+NPK + SWEE L+ +YTF TVEDFW L+N+++ P++LSI ++Y+LFK+G+RP +E+ N +GG W+F + K RL+E WLY++L LIGET++D +D+ GAVVS+++ QDR+++W+ TA ++ Q I + +L DL L+++ + A +G S +
Sbjct: 35 KHPLQNRWVLWYDNPKKRHSTESWEENLKNVYTFSTVEDFWCLYNNILAPTKLSIGSNYHLFKDGIRPMWEDPINAKGGKWIFTNPRSRKARLDECWLYVMLSLIGETLQDEDDVCGAVVSVRKAQDRIAIWSATANAEDRQKAIGRGFRQALVDLGKNETLKYQSHADAAASGSSFQN 213
BLAST of EWM24978.1 vs. NCBI_GenBank
Match: gi|1173933138|gb|OQR85005.1| (eukaryotic initiation factor 4E [Achlya hypogyna]) HSP 1 Score: 169.859 bits (429), Expect = 1.469e-48 Identity = 78/178 (43.82%), Postives = 122/178 (68.54%), Query Frame = 0
Query: 94 KHVLQNRWSFFYNNPKAN-PMLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEE--NPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSLDLPPETKLEFKPNQKVAEAGGSMSS 268
KH LQ++W +Y+NPK +WEE L+KIYTF+TVEDFW LFN+V+ P++LS ++Y+LFKEG+RP +E+ N +GG W+ + + RL++ W++++L LIGE +ED +D+ G VVS+++ QDRL++WTKTA ++ LQ + + LDL L+F+ + A +G S +
Sbjct: 46 KHPLQHKWVLWYDNPKKKLATETWEENLKKIYTFDTVEDFWCLFNNVLPPTKLSTGSNYHLFKEGIRPMWEDPINMKGGKWILTNTRQRRARLDDSWMHVMLALIGEALEDDDDVCGCVVSVRKSQDRLAVWTKTAVNEPLQRAVGRNFRKVLDLGKNEVLKFQSHADAAASGSSFQN 223
BLAST of EWM24978.1 vs. NCBI_GenBank
Match: gi|669169581|ref|XP_008620139.1| (hypothetical protein SDRG_15735 [Saprolegnia diclina VS20] >gi|530728148|gb|EQC26390.1| hypothetical protein SDRG_15735 [Saprolegnia diclina VS20]) HSP 1 Score: 169.474 bits (428), Expect = 1.962e-48 Identity = 80/178 (44.94%), Postives = 121/178 (67.98%), Query Frame = 0
Query: 94 KHVLQNRWSFFYNNPKAN-PMLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEE--NPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSLDLPPETKLEFKPNQKVAEAGGSMSS 268
KH LQ++W +Y+NPK SWEE L+ IYTFETVEDFW LFN+V+ P++LS ++Y+LFKEG+RP +E+ N +GG W+ + + RL++ W++++L LIGE +ED +DI G VVS+++ QDRL++WTKTA ++ LQ + + LDL L+F+ + A +G S +
Sbjct: 39 KHPLQHKWVLWYDNPKKKLATESWEENLKLIYTFETVEDFWCLFNNVLPPTKLSTGSNYHLFKEGIRPMWEDPINMKGGKWILTNTRQRRARLDDSWMHVMLALIGEALEDEDDICGCVVSVRKSQDRLAVWTKTAVNEPLQRTVGRNFRKVLDLGKNEVLKFQSHADAAASGSSFQN 216 The following BLAST results are available for this feature:
BLAST of EWM24978.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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