EWM24978.1, cds5682 (CDS) Nannochloropsis gaditana

Overview
NameEWM24978.1
Unique Namecds5682
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:610771..611052 +
Alignment locationCM002466.1:611484..611975 +
Alignment locationCM002466.1:612103..612162 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM24978.1
Producteukaryotic translation initiation factor iso4e
Orig transcript idgnl|cribi|Naga_100122g15.3565.mrna
GbkeyCDS
Noteencoded by transcript variant 1; alternatively spliced
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:610771..611052 +
CM002466.1supercontigCM002466.1:611484..611975 +
CM002466.1supercontigCM002466.1:612103..612162 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0003723RNA binding
GO:0003743translation initiation factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: INTERPRO
TermDefinition
IPR001040TIF_eIF_4E
IPR023398TIF_eIF4e-like_dom
Homology
BLAST of EWM24978.1 vs. NCBI_GenBank
Match: gi|585106611|gb|EWM24978.1| (eukaryotic translation initiation factor iso4e [Nannochloropsis gaditana])

HSP 1 Score: 575.089 bits (1481), Expect = 0.000e+0
Identity = 277/277 (100.00%), Postives = 277/277 (100.00%), Query Frame = 0
Query:    1 MNARESCSKHIHLGLWPLVAFRECFWVLLSDFWEGVFTLFSIAYYFSLKTNPLTLMSAEPLVQKAVDVNCSGSVMDGDTEGSCSSKPTDGETDKHVLQNRWSFFYNNPKANPMLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEENPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSLDLPPETKLEFKPNQKVAEAGGSMSSAQDVKGYTV 277
            MNARESCSKHIHLGLWPLVAFRECFWVLLSDFWEGVFTLFSIAYYFSLKTNPLTLMSAEPLVQKAVDVNCSGSVMDGDTEGSCSSKPTDGETDKHVLQNRWSFFYNNPKANPMLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEENPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSLDLPPETKLEFKPNQKVAEAGGSMSSAQDVKGYTV
Sbjct:    1 MNARESCSKHIHLGLWPLVAFRECFWVLLSDFWEGVFTLFSIAYYFSLKTNPLTLMSAEPLVQKAVDVNCSGSVMDGDTEGSCSSKPTDGETDKHVLQNRWSFFYNNPKANPMLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEENPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSLDLPPETKLEFKPNQKVAEAGGSMSSAQDVKGYTV 277          
BLAST of EWM24978.1 vs. NCBI_GenBank
Match: gi|585106612|gb|EWM24979.1| (eukaryotic translation initiation factor iso4e [Nannochloropsis gaditana])

HSP 1 Score: 336.265 bits (861), Expect = 5.797e-115
Identity = 165/165 (100.00%), Postives = 165/165 (100.00%), Query Frame = 0
Query:  113 MLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEENPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSLDLPPETKLEFKPNQKVAEAGGSMSSAQDVKGYTV 277
            MLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEENPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSLDLPPETKLEFKPNQKVAEAGGSMSSAQDVKGYTV
Sbjct:    1 MLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEENPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSLDLPPETKLEFKPNQKVAEAGGSMSSAQDVKGYTV 165          
BLAST of EWM24978.1 vs. NCBI_GenBank
Match: gi|695463260|ref|XP_009538670.1| (hypothetical protein PHYSODRAFT_566314 [Phytophthora sojae] >gi|348665981|gb|EGZ05809.1| hypothetical protein PHYSODRAFT_566314 [Phytophthora sojae])

HSP 1 Score: 176.407 bits (446), Expect = 7.092e-51
Identity = 84/194 (43.30%), Postives = 128/194 (65.98%), Query Frame = 0
Query:   88 TDGETDKHVLQNRWSFFYNNPKA-NPMLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEE--NPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSL-DLPPETKLEFKPNQKVAEAGGSMSSAQDVKGYTV 277
             D    KH LQNRW  +Y+NPK  N   SWEE L+ +YTF TVEDFW L+N+++ P++LSI ++Y+LFKEG+RP +E+  N +GG W+F   +  K RL+E WLY++L LIGET++D +D+ GAVVS+++ QDR+++W+ TA  ++ Q  I    + +L DL     L+++ +   A +G S  +   V  Y +
Sbjct:   27 VDDVATKHPLQNRWVLWYDNPKKRNSNESWEENLKNVYTFNTVEDFWCLYNNILAPTKLSIGSNYHLFKEGIRPMWEDPINAKGGKWIFTNPRSRKARLDECWLYVMLSLIGETLQDEDDVCGAVVSVRKAQDRIAIWSATANAEDRQKAIGRGFRQALVDLGKNETLKYQSHADAAASGSSFQNEVYVLRYQI 220          
BLAST of EWM24978.1 vs. NCBI_GenBank
Match: gi|675173023|ref|XP_008895396.1| (hypothetical protein PPTG_04839 [Phytophthora parasitica INRA-310] >gi|566015505|gb|ETI38416.1| hypothetical protein F443_15818 [Phytophthora parasitica P1569] >gi|567952955|gb|ETK78618.1| hypothetical protein L915_15374 [Phytophthora parasitica] >gi|567981612|gb|ETL32049.1| hypothetical protein L916_15268 [Phytophthora parasitica] >gi|568011119|gb|ETL85297.1| hypothetical protein L917_15090 [Phytophthora parasitica] >gi|568104918|gb|ETN19563.1| hypothetical protein PPTG_04839 [Phytophthora parasitica INRA-310] >gi|570319241|gb|ETO67189.1| hypothetical protein F444_15798 [Phytophthora parasitica P1976] >gi|570943043|gb|ETP08300.1| hypothetical protein F441_15651 [Phytophthora parasitica CJ01A1] >gi|570973828|gb|ETP36353.1| hypothetical protein F442_15659 [Phytophthora parasitica P10297])

HSP 1 Score: 174.096 bits (440), Expect = 2.547e-50
Identity = 81/179 (45.25%), Postives = 125/179 (69.83%), Query Frame = 0
Query:   94 KHVLQNRWSFFYNNPKA-NPMLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEE--NPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSL-DLPPETKLEFKPNQKVAEAGGSMSS 268
            KH LQNRW  +Y+NPK  +   SWEE L+ +YTF TVEDFW L+N+++ P++LSI ++Y+LFKEG+RP +E+  N +GG W+F   +  K RL+E WLY++L LIGET++D +DI GAVVS+++ QDR+++W+ TA+ ++ Q  I    + +L DL     L+++ +   A +G S  +
Sbjct:   38 KHPLQNRWVLWYDNPKKRHSTESWEENLKNVYTFNTVEDFWCLYNNILTPTKLSIGSNYHLFKEGIRPMWEDPVNAKGGKWIFTNPRSRKARLDECWLYVMLSLIGETLQDEDDICGAVVSVRKAQDRIAIWSATASAEDRQKAIGRGFRQALVDLGKNETLKYQSHADAAASGSSFQN 216          
BLAST of EWM24978.1 vs. NCBI_GenBank
Match: gi|568041025|gb|ETM38449.1| (hypothetical protein L914_15227 [Phytophthora parasitica])

HSP 1 Score: 174.096 bits (440), Expect = 3.410e-50
Identity = 81/179 (45.25%), Postives = 125/179 (69.83%), Query Frame = 0
Query:   94 KHVLQNRWSFFYNNPKA-NPMLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEE--NPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSL-DLPPETKLEFKPNQKVAEAGGSMSS 268
            KH LQNRW  +Y+NPK  +   SWEE L+ +YTF TVEDFW L+N+++ P++LSI ++Y+LFKEG+RP +E+  N +GG W+F   +  K RL+E WLY++L LIGET++D +DI GAVVS+++ QDR+++W+ TA+ ++ Q  I    + +L DL     L+++ +   A +G S  +
Sbjct:   38 KHPLQNRWVLWYDNPKKRHSTESWEENLKNVYTFNTVEDFWCLYNNILTPTKLSIGSNYHLFKEGIRPMWEDPVNAKGGKWIFTNPRSRKARLDECWLYVMLSLIGETLQDEDDICGAVVSVRKAQDRIAIWSATASAEDRQKAIGRGFRQALVDLGKNEMLKYQSHADAAASGSSFQN 216          
BLAST of EWM24978.1 vs. NCBI_GenBank
Match: gi|970630899|gb|KUF77704.1| (Eukaryotic translation initiation factor 4E [Phytophthora nicotianae])

HSP 1 Score: 174.481 bits (441), Expect = 3.527e-50
Identity = 81/179 (45.25%), Postives = 125/179 (69.83%), Query Frame = 0
Query:   94 KHVLQNRWSFFYNNPKA-NPMLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEE--NPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSL-DLPPETKLEFKPNQKVAEAGGSMSS 268
            KH LQNRW  +Y+NPK  +   SWEE L+ +YTF TVEDFW L+N+++ P++LSI ++Y+LFKEG+RP +E+  N +GG W+F   +  K RL+E WLY++L LIGET++D +DI GAVVS+++ QDR+++W+ TA+ ++ Q  I    + +L DL     L+++ +   A +G S  +
Sbjct:   38 KHPLQNRWVLWYDNPKKRHSTESWEENLKNVYTFNTVEDFWCLYNNILTPTKLSIGSNYHLFKEGIRPMWEDPVNAKGGKWIFTNPRSRKARLDECWLYVMLSLIGETLQDEDDICGAVVSVRKAQDRIAIWSATASAEDRQKAIGRGFRQALVDLGKNETLKYQSHADAAASGSSFQN 216          
BLAST of EWM24978.1 vs. NCBI_GenBank
Match: gi|301118596|ref|XP_002907026.1| (eukaryotic initiation factor 4E, putative [Phytophthora infestans T30-4] >gi|262108375|gb|EEY66427.1| eukaryotic initiation factor 4E, putative [Phytophthora infestans T30-4])

HSP 1 Score: 174.096 bits (440), Expect = 3.643e-50
Identity = 81/179 (45.25%), Postives = 124/179 (69.27%), Query Frame = 0
Query:   94 KHVLQNRWSFFYNNPKA-NPMLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEE--NPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSL-DLPPETKLEFKPNQKVAEAGGSMSS 268
            KH LQNRW  +Y+NPK  +   SWEE L+ +YTF TVEDFW L+N+++ P++LSI ++Y+LFKEG+RP +E+  N +GG W+F   +  K RL+E WLY++L LIGET++D +DI GAVVS+++ QDR+++W+ TA  ++ Q  I    + +L DL     L+++ +   A +G S  +
Sbjct:   35 KHPLQNRWVLWYDNPKKRHSTESWEENLKNVYTFNTVEDFWCLYNNILAPTKLSIGSNYHLFKEGIRPMWEDPINAKGGKWIFTNPRSRKARLDECWLYVMLSLIGETLQDEDDICGAVVSVRKAQDRIAIWSATANAEDRQKAIGRGFRQALVDLGKNETLKYQSHADAAASGSSFQN 213          
BLAST of EWM24978.1 vs. NCBI_GenBank
Match: gi|1214693640|gb|OWZ07907.1| (Eukaryotic initiation factor 4E [Phytophthora megakarya])

HSP 1 Score: 172.17 bits (435), Expect = 2.842e-49
Identity = 79/179 (44.13%), Postives = 124/179 (69.27%), Query Frame = 0
Query:   94 KHVLQNRWSFFYNNPKA-NPMLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEE--NPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSL-DLPPETKLEFKPNQKVAEAGGSMSS 268
            KH LQNRW  +Y+NPK  +   SWEE L+ +YTF TVEDFW L+N+++ P++LSI ++Y+LFK+G+RP +E+  N +GG W+F   +  K RL+E WLY++L LIGET++D +D+ GAVVS+++ QDR+++W+ TA  ++ Q  I    + +L DL     L+++ +   A +G S  +
Sbjct:   35 KHPLQNRWVLWYDNPKKRHSTESWEENLKNVYTFSTVEDFWCLYNNILAPTKLSIGSNYHLFKDGIRPMWEDPINAKGGKWIFTNPRSRKARLDECWLYVMLSLIGETLQDEDDVCGAVVSVRKAQDRIAIWSATANAEDRQKAIGRGFRQALVDLGKNETLKYQSHADAAASGSSFQN 213          
BLAST of EWM24978.1 vs. NCBI_GenBank
Match: gi|1173933138|gb|OQR85005.1| (eukaryotic initiation factor 4E [Achlya hypogyna])

HSP 1 Score: 169.859 bits (429), Expect = 1.469e-48
Identity = 78/178 (43.82%), Postives = 122/178 (68.54%), Query Frame = 0
Query:   94 KHVLQNRWSFFYNNPKAN-PMLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEE--NPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSLDLPPETKLEFKPNQKVAEAGGSMSS 268
            KH LQ++W  +Y+NPK      +WEE L+KIYTF+TVEDFW LFN+V+ P++LS  ++Y+LFKEG+RP +E+  N +GG W+    +  + RL++ W++++L LIGE +ED +D+ G VVS+++ QDRL++WTKTA ++ LQ  +    +  LDL     L+F+ +   A +G S  +
Sbjct:   46 KHPLQHKWVLWYDNPKKKLATETWEENLKKIYTFDTVEDFWCLFNNVLPPTKLSTGSNYHLFKEGIRPMWEDPINMKGGKWILTNTRQRRARLDDSWMHVMLALIGEALEDDDDVCGCVVSVRKSQDRLAVWTKTAVNEPLQRAVGRNFRKVLDLGKNEVLKFQSHADAAASGSSFQN 223          
BLAST of EWM24978.1 vs. NCBI_GenBank
Match: gi|669169581|ref|XP_008620139.1| (hypothetical protein SDRG_15735 [Saprolegnia diclina VS20] >gi|530728148|gb|EQC26390.1| hypothetical protein SDRG_15735 [Saprolegnia diclina VS20])

HSP 1 Score: 169.474 bits (428), Expect = 1.962e-48
Identity = 80/178 (44.94%), Postives = 121/178 (67.98%), Query Frame = 0
Query:   94 KHVLQNRWSFFYNNPKAN-PMLSWEEKLQKIYTFETVEDFWALFNSVVGPSRLSIQADYYLFKEGVRPSYEE--NPEGGVWMFNLEKGNKKRLEEVWLYLVLGLIGETMEDSNDILGAVVSIKRGQDRLSLWTKTAADKELQVRIATRVKMSLDLPPETKLEFKPNQKVAEAGGSMSS 268
            KH LQ++W  +Y+NPK      SWEE L+ IYTFETVEDFW LFN+V+ P++LS  ++Y+LFKEG+RP +E+  N +GG W+    +  + RL++ W++++L LIGE +ED +DI G VVS+++ QDRL++WTKTA ++ LQ  +    +  LDL     L+F+ +   A +G S  +
Sbjct:   39 KHPLQHKWVLWYDNPKKKLATESWEENLKLIYTFETVEDFWCLFNNVLPPTKLSTGSNYHLFKEGIRPMWEDPINMKGGKWILTNTRQRRARLDDSWMHVMLALIGEALEDEDDICGCVVSVRKSQDRLAVWTKTAVNEPLQRTVGRNFRKVLDLGKNEVLKFQSHADAAASGSSFQN 216          
The following BLAST results are available for this feature:
BLAST of EWM24978.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106611|gb|EWM24978.1|0.000e+0100.00eukaryotic translation initiation factor iso4e [Na... [more]
gi|585106612|gb|EWM24979.1|5.797e-115100.00eukaryotic translation initiation factor iso4e [Na... [more]
gi|695463260|ref|XP_009538670.1|7.092e-5143.30hypothetical protein PHYSODRAFT_566314 [Phytophtho... [more]
gi|675173023|ref|XP_008895396.1|2.547e-5045.25hypothetical protein PPTG_04839 [Phytophthora para... [more]
gi|568041025|gb|ETM38449.1|3.410e-5045.25hypothetical protein L914_15227 [Phytophthora para... [more]
gi|970630899|gb|KUF77704.1|3.527e-5045.25Eukaryotic translation initiation factor 4E [Phyto... [more]
gi|301118596|ref|XP_002907026.1|3.643e-5045.25eukaryotic initiation factor 4E, putative [Phytoph... [more]
gi|1214693640|gb|OWZ07907.1|2.842e-4944.13Eukaryotic initiation factor 4E [Phytophthora mega... [more]
gi|1173933138|gb|OQR85005.1|1.469e-4843.82eukaryotic initiation factor 4E [Achlya hypogyna][more]
gi|669169581|ref|XP_008620139.1|1.962e-4844.94hypothetical protein SDRG_15735 [Saprolegnia dicli... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5697rna5697Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications