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Properties
| Property Name | Value |
|---|
| Product | f-box protein |
| Orig transcript id | gnl|cribi|Naga_100068g27.2445.mrna |
| Orig protein id | gnl|cribi|Naga_100068g27.2445 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002466.1 | supercontig | CM002466.1:594062..595555 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna5689 ID=rna5689|Name=rna5689|organism=Nannochloropsis gaditana|type=mRNA|length=4542bp
AAGCCTGTTATTCTCGAATAAGCGTTCCAGACTGTCTGACAAGGGCCTTA
GACTCAAACCAAAGACGCTTCCGCCTGCCAAAACGTCGTCAAAACGGTCG
CACGGGAGGGCAATGATCACCGCGCCGGTGCGAGGAGCGAGCGTGGCAGT
GAGAGCATCTAATTTAATGCACCCGCTCCACCCTCGCTCAAGGAAGGCTT
GAGGCAGCAACGTTCCCTGTTTCCTCGGGCTCTGTCTCAAGGACAACGCC
AGCCATACACGTGAACGTGTGCGGATCCACCGCCTGAAGTCTGGACAATG
CAAAATGATCCAGTGGCTTTGTCATAGGCTTGTCTGTGGCGTCCCTTGCA
CTGTGTTTTTGGTCTTCGGGCATGCCTTCTTGTCCCTGCGCCCATCCTCA
CACGTCTGCATCTCGTTTCGGCCCCTTCGGCCCCCTCCCTATCAGGCCTC
CCAGCTAGGTATGAATGCGCTTAATCTCCCGGGCTTTAGCTCGGGCGATC
AAGCTAGGGGCTTGCTGAATTTCATCACCGACATTCGAAACTGTACTTCC
CGGGAGGCAGAGCAGATGCGTATTGACAAGGAGCTCGCCAACATCAGACA
CAAATTTTCTTCCCCTGCCACGCTTAGCCCTTACCAACGCAAAAAATACG
TGTGGAAACTCGTCTACATATTCACGTTGGGATACGAGGTCGACTTTGGT
CACATGGAGATCATTGCTCTCATTTCATCCGGAAAGTTCTCCGAAAAAAG
CGTGGGCTACGTCGCGGTCTCCTTGCTTATGAAGGCGGACAACGAGATGA
TGACCCTCGTCGTGAACTCGGTCCGCAACGACCTTTTGTCTCACAACAAC
TACTTCCAAGCTTTGGCTCTGGCCTCCATTGCCAACATAGGGGGCGCTGA
GTTTGCGGAGGCGTTGACTCCTGACGTGCAGCGGGTACTCACTTCCCGTG
ACACGGACTCCGTTGTGCGCAAGAAGGCAGCCTTGTGCCTCTTGAAATTG
TTTCGCACGAATCCGGACAACATCACACACCCGGAGTGGGCCCCTCAGAT
GGCCCGCCTGTTGGAGGAACGGCACCTGGGCTTGCTCCTCTCCGCCATGT
CGCTTCTGATCGCCCTGGCCTCCAAGGTCCCGAGGGACTACGAAATCTGC
GTCCCGTACGTCATCGCCCTTCTCTCCCGCCTCGTGCTTACGCCGCGGGC
GGTCATGGATGACTACCTGTACTACAACACGCCGTCTCCCTGGCTCCAGG
TCAAGTTTCTGAAGTACCTGCAGCTCTACCCCCCTCCGGAGGACAGCGTC
CAAGCCGAGCGCCTGACAGACTCCTTGCGGAAGATTTTGACGCACACGGC
GGTCTCGGACACGGTGAACAAGAGCAACGCCGACCACGCCATTCTGTTTG
AGGCCGTGAACGTGGTCTTGTCGCAAGGGCAGGCGGCCCATGCTGGCCTG
AAGGCCCAGGCTTTGACGCTGCTGGGTCGATTTATCTCGGTGAAGGAGCC
CAACATTCGGTACCTCGGGCTGGAGGCCTTGGGCAGGTTTGCGCAATTGG
CGGAAGGGAGGGGTGGGGAGGAAGGGGTCAAGAAGCACATGTCTACAGTC
TTTGTCTCCCTCAAGGACGCCGACATTAGCGTGCGGCGGCAGGCGCTGGA
CCTGGTCTTTGCCATGTGCGACGCGTCCAACGCGCGCGATATTGTGGGAG
AGCTGACCACCAACCTAGCCACGGCAGACGCTGGCATAAGGGAGGAAATG
GTCCTGAAAATAGCCGTTTTGGCAGAAAGATACGCGACCGACCTGCGTTG
GTACGTGGATACAGTGCTCCAGCTGATTCACCTTGCTGGAGACTACGTCG
CAGACGACGTCTGGCATCGTATTATCCAAATCGTGACGGGCCACAAGGAT
CTACAAGCGTACGCGGCTGAGAATTGTTTTCGAGCCCTGGAAGCCCGCAA
CGTGCACGAGGCCGCCGTCTTGGTGGGAGGCTATGTGCTGGGGGAGTTTG
GGTACTTGATTGCGGAACAGCCGGGTAGGGGGGGCGAGGTGCAGGTCCGC
GTATTGCAGAAGCACTTTGCCGGGACGACCCCTCGCACTAAGGCCTTGCT
CTTGAGCACGTACGCCAAGCTGGAGAACCTATACCCTGAAGTCCGACCGC
TGGTGCTACCGACGTTTGAAAAATACACGCCTTCCACGGAGCTGGAATTG
CAACAGCGAGCATGCGAATATGCCTCATTGGTGTCACAGGGGGACGATAT
CTTGGACGGCGTTCTACAGGAAATGCCAGCATGGCCGGAGGACAAGGAGT
CGGCTTTGGAGGCTCGCTTGCGAAAAAAGCAGGAGGCCTCGGAGGACAGG
ACGGGCTTCCAGAAGAGCGGGGAGGGAGGGATGGAGGATAACGGAGCAAC
CCGTGGCGGCAGGAATGAGGGAGGAAGCTCTAGAAAGACCGGCCCAATGA
GGCCCACGGCGGCAGGGTTCAGTGGGAAGGGGAATGGGGGCGGGGGCGGG
GTGGAGGACCTTTTGAACTTGGGGTCGGGCGAAGCAGTCAATGCGGGACC
AACGGCAGCTCTCACCACGGCCATGGGTAAGGCCTCGATTTCCCCGGCCT
CTGCAGAGGATGATCTGCTTGGTATCACCGACAGCGGTGGAGACACCGCG
GCCAGCGGTATCAGAACAAGTGGTGTCAGCAATGCGGGGACAGAGGCCGG
CGTGCATGGGATCCCTGAGGAGATGCGCCCACGATTGGAGACCGCTTTCA
AGGCTTTAATCACGACCGTCTCGGGTGTCTTGTTCGAGAACGACAAGTTG
CAAGTGGGCATCAAGCACGATTACCGCGGATCTCAGGGGAAAATGGTATT
GTTTTACGGCAACAAAACCAGCGAGGCTCTAACAGACTTCGCAGCTTCTG
TCACCAAGACATTTTATTTGCAGATGGAAAGCCAGGATCCCCCCAAGATT
GTGGCAGCGGGGGAGCAGGCCAAACAGAGCTTAAGCATGGAGGTGATGAA
GCCATTTGACTACTCGGACGCTCCCGAGCTTCTCCTTTCTTACACTTTTC
AAGGCCAAAAACATCTGTACGAGCTGACGCTTCCCATCGTCCCCACCAGC
TTTTTTGAGCCCGTCACACTTGCTGCGCCCGACTACATGGCCCGTTGGCG
AAGTCTCGAAGGTCAGAGTAGGGAGCGACAGGAAATCCTGCAGCAGCCCG
CAAATTTTTCGTACGACTCCTCCGCTTTGGTTGCCTTTCGCCTTAAGATA
TTGGATGGCTTGCACCTGGCACAAGCCCAGGGCCTCGACCAAAATGACCT
GTCCTTGTCGGCGGTGGGCTCTCTGCGGACCGGGACGGCCGGGCCAGACG
GTGGGAAGATCTCAGTCGGGGCCTTGTTGAGGATCGAGGTCAATGCGCAA
GTCCGGGCGATGCGTATAACAGCGCGGGCCGTCCACGGAACAGTCGCGGC
TGCTTTGGTGAACACGATCAAGGCACTCGTGACATAAAGCAGCTCTTGTG
GGACGGGAAAGAAATAGCAAAAGGAGACAACAGGTGCAGGCGGCCGTGGA
GGGTTTTGGGGTGGGGCAGCACGGCAAGACATCCTCCATGTATTATTTAC
AAAGAACACTTAAAGTGCACAGAGGGACCAAGAATCGTGGTGGTACTCGT
GCTTCATCTATGAACATCTAGCAGTGAACGTACGATCGCTGCCATTTCCT
TCCTCACTGCTTCTGCCACAGTCGCTCATACGCCTGAAGGCCTCTCTCTG
GCCCGTGCCGCAATATCATGGCCTGCCTCAGAGCCTTCTCTATCGTCGCC
ATTACTTGATGCCTCTCATCGACCCCCTCGGTCGTGTCTTGGCAAATGAT
CTCCACCATTCTTGTTACATGTTCTTGAGTCCCTTCCATTTGCCCCAGAC
CGGCCTTTCCACCATGGAGAGGTCTCTCCTGCGCGTGGCGGAGATTGCCC
CCCGACTCAATTGCCCAAGTCAACATGTGCATGATCACGTTCTTCAAATT
GCCATGGTTGCACACCTGCCAAGCAAGGCTTAAACCGGGCTTCAAATGAT
AGACCTGGTGAGCCCATCCCGGAGGAATGACGACAAGTTCCCCCTCTTCT
TGCACCAAGGCTTGCACTCCTTCCACGTCTGCCAGCACTTCTGGGAGATC
AAGAGTCACAGCACCTTCAAATATTTCTGGTACCTTGTAATACAGGTCAA
AATCCGTGCTCTTCCACCCAGCACTGACTTCTCCCTCCCAGGCTTCTGGA
AGTACTCTCTTCAGACCCAAGTCCGCGCTGCAGGGTGGGAAAAAGGTCCA
TATCTTGCGTCCTTCCAGTAGATAATTGACCCCTGTCCATTCGAAGGGAT
CGACATGTAAAAACGAACGCGCACCTGTCCCCCCAAGAATAAGGCAATGC
TTTTTTGGTCGAATACGTTGAGGAAAAAGATCGAAATAATCTAGTTTTCC
AAACAATGACGGCGGTAAACGAAATGGGTCCTTTATCTTCCGATTCTGAG
AATCTTCCAACAATTTTTCATTCAACAAGTACCAAGCTTCCT back to topprotein sequence of rna5689 >rna5689-protein ID=rna5689-protein|Name=rna5689|organism=Nannochloropsis gaditana|type=polypeptide|length=401bp
MERQRCRRISWGILISFNFLPITRGLLRTLPLPPCLDARDLPSQQALDAY
IKKGPCVLTHAFDKDPNTRKMADDTFSDTFFEEFQDVELEVQLKRNSKIA
KPRLYSGTLAGIVDGMMQKSTHEEAWYLLNEKLLEDSQNRKIKDPFRLPP
SLFGKLDYFDLFPQRIRPKKHCLILGGTGARSFLHVDPFEWTGVNYLLEG
RKIWTFFPPCSADLGLKRVLPEAWEGEVSAGWKSTDFDLYYKVPEIFEGA
VTLDLPEVLADVEGVQALVQEEGELVVIPPGWAHQVYHLKPGLSLAWQVC
NHGNLKNVIMHMLTWAIESGGNLRHAQERPLHGGKAGLGQMEGTQEHVTR
MVEIICQDTTEGVDERHQVMATIEKALRQAMILRHGPERGLQAYERLWQK
Q back to topmRNA from alignment at CM002466.1:594062..595555- Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >rna5689 ID=rna5689|Name=rna5689|organism=Nannochloropsis gaditana|type=mRNA|length=1494bp|location=Sequence derived from alignment at CM002466.1:594062..595555- (Nannochloropsis gaditana)
GGACCTACTCATGAAGCTCACAATCCAGCGACAGGTATGGAACGACAGCG
ATGCCGGAGGATAAGTTGGGGGATCTTAATTAGTTTCAATTTTCTGCCGA
TTACCCGCGGACTACTACGGACATTGCCTCTGCCACCCTGTCTGGATGCG
AGAGACTTGCCATCGCAGCAGGCACTCGACGCCTATATCAAGAAAGGACC
CTGCGTGCTCACCCATGCCTTCGATAAGGATCCCAACACGCGTAAAATGG
CGGATGATACCTTTAGTGACACATTTTTCGAGGAGTTTCAAGACGTGGAG
CTAGAAGTTCAACTGAAACGCAATTCCAAGATCGCGAAGCCGCGCTTGTA
CTCGGGCACTTTGGCTGGTATTGTGGATGGTATGATGCAAAAAAGCACGC
ATGAGGAAGCTTGGTACTTGTTGAATGAAAAATTGTTGGAAGATTCTCAG
AATCGGAAGATAAAGGACCCATTTCGTTTACCGCCGTCATTGTTTGGAAA
ACTAGATTATTTCGATCTTTTTCCTCAACGTATTCGACCAAAAAAGCATT
GCCTTATTCTTGGGGGGACAGGTGCGCGTTCGTTTTTACATGTCGATCCC
TTCGAATGGACAGGGGTCAATTATCTACTGGAAGGACGCAAGATATGGAC
CTTTTTCCCACCCTGCAGCGCGGACTTGGGTCTGAAGAGAGTACTTCCAG
AAGCCTGGGAGGGAGAAGTCAGTGCTGGGTGGAAGAGCACGGATTTTGAC
CTGTATTACAAGGTACCAGAAATATTTGAAGGTGCTGTGACTCTTGATCT
CCCAGAAGTGCTGGCAGACGTGGAAGGAGTGCAAGCCTTGGTGCAAGAAG
AGGGGGAACTTGTCGTCATTCCTCCGGGATGGGCTCACCAGGTCTATCAT
TTGAAGCCCGGTTTAAGCCTTGCTTGGCAGGTGTGCAACCATGGCAATTT
GAAGAACGTGATCATGCACATGTTGACTTGGGCAATTGAGTCGGGGGGCA
ATCTCCGCCACGCGCAGGAGAGACCTCTCCATGGTGGAAAGGCCGGTCTG
GGGCAAATGGAAGGGACTCAAGAACATGTAACAAGAATGGTGGAGATCAT
TTGCCAAGACACGACCGAGGGGGTCGATGAGAGGCATCAAGTAATGGCGA
CGATAGAGAAGGCTCTGAGGCAGGCCATGATATTGCGGCACGGGCCAGAG
AGAGGCCTTCAGGCGTATGAGCGACTGTGGCAGAAGCAGTGAGGAAGGAA
ATGGCAGCGATCGTACGTTCACTGCTAGATGTTCATAGATGAAGCACGAG
TACCACCACGATTCTTGGTCCCTCTGTGCACTTTAAGTGTTCTTTGTAAA
TAATACATGGAGGATGTCTTGCCGTGCTGCCCCACCCCAAAACCCTCCAC
GGCCGCCTGCACCTGTTGTCTCCTTTTGCTATTTCTTTCCCGTCCCACAA
GAGCTGCTTTATGTCACGAGTGCCTTGATCGTGTTCACCAAAGC back to topCoding sequence (CDS) from alignment at CM002466.1:594062..595555- >rna5689 ID=rna5689|Name=rna5689|organism=Nannochloropsis gaditana|type=CDS|length=1206bp|location=Sequence derived from alignment at CM002466.1:594062..595555- (Nannochloropsis gaditana)
ATGGAACGACAGCGATGCCGGAGGATAAGTTGGGGGATCTTAATTAGTTT
CAATTTTCTGCCGATTACCCGCGGACTACTACGGACATTGCCTCTGCCAC
CCTGTCTGGATGCGAGAGACTTGCCATCGCAGCAGGCACTCGACGCCTAT
ATCAAGAAAGGACCCTGCGTGCTCACCCATGCCTTCGATAAGGATCCCAA
CACGCGTAAAATGGCGGATGATACCTTTAGTGACACATTTTTCGAGGAGT
TTCAAGACGTGGAGCTAGAAGTTCAACTGAAACGCAATTCCAAGATCGCG
AAGCCGCGCTTGTACTCGGGCACTTTGGCTGGTATTGTGGATGGTATGAT
GCAAAAAAGCACGCATGAGGAAGCTTGGTACTTGTTGAATGAAAAATTGT
TGGAAGATTCTCAGAATCGGAAGATAAAGGACCCATTTCGTTTACCGCCG
TCATTGTTTGGAAAACTAGATTATTTCGATCTTTTTCCTCAACGTATTCG
ACCAAAAAAGCATTGCCTTATTCTTGGGGGGACAGGTGCGCGTTCGTTTT
TACATGTCGATCCCTTCGAATGGACAGGGGTCAATTATCTACTGGAAGGA
CGCAAGATATGGACCTTTTTCCCACCCTGCAGCGCGGACTTGGGTCTGAA
GAGAGTACTTCCAGAAGCCTGGGAGGGAGAAGTCAGTGCTGGGTGGAAGA
GCACGGATTTTGACCTGTATTACAAGGTACCAGAAATATTTGAAGGTGCT
GTGACTCTTGATCTCCCAGAAGTGCTGGCAGACGTGGAAGGAGTGCAAGC
CTTGGTGCAAGAAGAGGGGGAACTTGTCGTCATTCCTCCGGGATGGGCTC
ACCAGGTCTATCATTTGAAGCCCGGTTTAAGCCTTGCTTGGCAGGTGTGC
AACCATGGCAATTTGAAGAACGTGATCATGCACATGTTGACTTGGGCAAT
TGAGTCGGGGGGCAATCTCCGCCACGCGCAGGAGAGACCTCTCCATGGTG
GAAAGGCCGGTCTGGGGCAAATGGAAGGGACTCAAGAACATGTAACAAGA
ATGGTGGAGATCATTTGCCAAGACACGACCGAGGGGGTCGATGAGAGGCA
TCAAGTAATGGCGACGATAGAGAAGGCTCTGAGGCAGGCCATGATATTGC
GGCACGGGCCAGAGAGAGGCCTTCAGGCGTATGAGCGACTGTGGCAGAAG
CAGTGA back to top
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