EWM25021.1, cds5674 (CDS) Nannochloropsis gaditana

Overview
NameEWM25021.1
Unique Namecds5674
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:594314..595519 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM25021.1
Productf-box protein
Orig transcript idgnl|cribi|Naga_100068g27.2445.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:594314..595519 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR003347JmjC_dom
Homology
BLAST of EWM25021.1 vs. NCBI_GenBank
Match: gi|585106656|gb|EWM25021.1| (f-box protein [Nannochloropsis gaditana])

HSP 1 Score: 832.787 bits (2150), Expect = 0.000e+0
Identity = 401/401 (100.00%), Postives = 401/401 (100.00%), Query Frame = 0
Query:    1 MERQRCRRISWGILISFNFLPITRGLLRTLPLPPCLDARDLPSQQALDAYIKKGPCVLTHAFDKDPNTRKMADDTFSDTFFEEFQDVELEVQLKRNSKIAKPRLYSGTLAGIVDGMMQKSTHEEAWYLLNEKLLEDSQNRKIKDPFRLPPSLFGKLDYFDLFPQRIRPKKHCLILGGTGARSFLHVDPFEWTGVNYLLEGRKIWTFFPPCSADLGLKRVLPEAWEGEVSAGWKSTDFDLYYKVPEIFEGAVTLDLPEVLADVEGVQALVQEEGELVVIPPGWAHQVYHLKPGLSLAWQVCNHGNLKNVIMHMLTWAIESGGNLRHAQERPLHGGKAGLGQMEGTQEHVTRMVEIICQDTTEGVDERHQVMATIEKALRQAMILRHGPERGLQAYERLWQKQ 401
            MERQRCRRISWGILISFNFLPITRGLLRTLPLPPCLDARDLPSQQALDAYIKKGPCVLTHAFDKDPNTRKMADDTFSDTFFEEFQDVELEVQLKRNSKIAKPRLYSGTLAGIVDGMMQKSTHEEAWYLLNEKLLEDSQNRKIKDPFRLPPSLFGKLDYFDLFPQRIRPKKHCLILGGTGARSFLHVDPFEWTGVNYLLEGRKIWTFFPPCSADLGLKRVLPEAWEGEVSAGWKSTDFDLYYKVPEIFEGAVTLDLPEVLADVEGVQALVQEEGELVVIPPGWAHQVYHLKPGLSLAWQVCNHGNLKNVIMHMLTWAIESGGNLRHAQERPLHGGKAGLGQMEGTQEHVTRMVEIICQDTTEGVDERHQVMATIEKALRQAMILRHGPERGLQAYERLWQKQ
Sbjct:    1 MERQRCRRISWGILISFNFLPITRGLLRTLPLPPCLDARDLPSQQALDAYIKKGPCVLTHAFDKDPNTRKMADDTFSDTFFEEFQDVELEVQLKRNSKIAKPRLYSGTLAGIVDGMMQKSTHEEAWYLLNEKLLEDSQNRKIKDPFRLPPSLFGKLDYFDLFPQRIRPKKHCLILGGTGARSFLHVDPFEWTGVNYLLEGRKIWTFFPPCSADLGLKRVLPEAWEGEVSAGWKSTDFDLYYKVPEIFEGAVTLDLPEVLADVEGVQALVQEEGELVVIPPGWAHQVYHLKPGLSLAWQVCNHGNLKNVIMHMLTWAIESGGNLRHAQERPLHGGKAGLGQMEGTQEHVTRMVEIICQDTTEGVDERHQVMATIEKALRQAMILRHGPERGLQAYERLWQKQ 401          
BLAST of EWM25021.1 vs. NCBI_GenBank
Match: gi|299473168|emb|CBN78744.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 175.637 bits (444), Expect = 3.846e-47
Identity = 125/372 (33.60%), Postives = 180/372 (48.39%), Query Frame = 0
Query:   34 PCLDARDLPSQQALDAYIKKGPCVLTHAFDKDPNTRKMADDTFSDTFFEEFQDVELEVQLKRNSKIAKPRLYSGTLAGIVDGMMQKSTHEEAWYLLNEKLLEDSQNR-KIKDPFRLPPSLFGKLDYFDLFPQRIRPKKHCLILGGTGARSFLHVDPFEWTGVNYLLEGRKIWTFFPPCS---ADLGLKRVLPEAW-EGEVSAGWKSTDFDLYYKVPEIFEGAVTLDLPEVLADVEGVQ---ALVQEEGELVVIPPGWAHQVYHLKPGLSLAWQVCNHGNLKNVIMHMLTWAIESGGNLRHAQERPLHGGKAGLGQMEGTQEHVTRMVEIICQDTTEGVDERHQVMATIEKALRQAMILRHGPERGLQAYERL 397
            P +D   L   Q  D      PC+LT      P+      +++ D   ++  +     Q+ R+++  +  ++  +L   V  +  +STH E+WYLL+E LL+  Q R ++      P  L G  D F LFP  +RP+  C I+GG GARSFLH DP EW G N LLEGRK+WTF PP +   + LG  R+ P A+    VSAGW+S + DLY        GA T   P      E +Q   + VQE GELV+IPP   HQVYHL+P L++A Q  +      V  HML W   S                                 +++     + +  R Q    I++ L+ A++ RHG E+GL+A++ L
Sbjct:   85 PRIDVTGLSRAQVADLVDFSRPCILTGVLSS-PDC-----ESWCDGLLQDLGEETCAFQI-RDNESGRSEVFEASLMDFVKRLQDESTHNESWYLLDEHLLDFPQARPELGALLEKPQDLLGT-DEFQLFPPSVRPQNLCTIVGGVGARSFLHSDPMEWMGWNVLLEGRKLWTFLPPLADLDSSLGTYRLAPNAFGSHNVSAGWQS-NVDLYQ------HGAATASWPTAGEGQEVMQHAVSGVQEAGELVLIPPRHWHQVYHLEPSLAVASQYMDFRVRDRVFRHMLDWCGASD--------------------------------DVLLSSRFDALALRDQ----IKEVLKVALVARHGGEKGLEAFDGL 405          
BLAST of EWM25021.1 vs. NCBI_GenBank
Match: gi|1129203092|gb|OLQ05774.1| (Bifunctional arginine demethylase and lysyl-hydroxylase PSR [Symbiodinium microadriaticum])

HSP 1 Score: 127.487 bits (319), Expect = 3.257e-28
Identity = 94/291 (32.30%), Postives = 142/291 (48.80%), Query Frame = 0
Query:   48 DAYIKKGPCVLTHAFDKDPNTRKMADDTFS-DTFFEEFQDVELEVQLKRNSKIAKPRLYSGTLAGIVDGMMQKSTHEEAWYLLNEKLLEDSQ--NRKIKDPFRLPPSLFGKLDYFDLFPQRIRPKKHCLILGGTGARSFLHVDPFEWTGVNYLLEGRKIWTFFP----------PCSADLGLKRVLPEAWEGEVSAGWKSTDFDLY-------YKVPEIFEGAVTLDLPEVLADVEGVQAL---VQEEGELVVIPPGWAHQVYHLKPGLSLAWQVCNHGNLKNVIMHMLTW 315
            D +     C+L       PN+ + A   F   T  EE    E+E +     +++   L + +L+ ++   +  S HE+   L++E ++  +   N  ++     PP  F + D F  FP  +RP + CL++GG GARS LH+DP  WTG N LL+GRK+W FFP          P S   G+++   E     + +GW+S D DL+        + P    G ++ DL +    V+G  A    VQE GE ++ P  W HQ YHL P    A QV N GNL  V+ H++ W
Sbjct:   14 DDFTSAADCLLVL-----PNSFQEASSNFCCKTLLEEAGCQEVEYKRAAQGELS---LATDSLSRVLCDFVPNSCHEDPVLLMDENVVSTTSLANSLLE---AAPP--FLREDLFCEFPLMLRPAQLCLVVGGQGARSDLHIDPLSWTGWNCLLQGRKLWRFFPDIPQHAEAFRPASRPFGIRKGGAEV--CTIGSGWRS-DVDLFANRTNTAAEPPCDSFGWLSPDLAK-FPHVKGCSAPLEHVQEPGETLIFPGHWWHQTYHLTPTFGFAGQVLNSGNLGRVLGHIIRW 287          
BLAST of EWM25021.1 vs. NCBI_GenBank
Match: gi|551667017|ref|XP_005836269.1| (hypothetical protein GUITHDRAFT_162130 [Guillardia theta CCMP2712] >gi|428180422|gb|EKX49289.1| hypothetical protein GUITHDRAFT_162130 [Guillardia theta CCMP2712])

HSP 1 Score: 109.383 bits (272), Expect = 9.473e-23
Identity = 79/254 (31.10%), Postives = 121/254 (47.64%), Query Frame = 0
Query:   90 EVQLKRNSKIAKPRLYSGTLAGIVDGMMQKSTHEEAWYLLNEKLLEDSQNRKIKDPFRLPPSLFGKLDYFDLFPQRIRPKKHCLILGGTGARSFLHVDPFEWTGVNYLLEGRKIWTFFPP--------CSADLGL-----------KRVLPEAWEGE--------VSAGWKSTDFDLYYKVPEIFEGAVTLDLPEVLADVEGVQALVQEEGELVVIPPGWAHQVYHLKPGLSLAWQVCNHGNLKNVIMHMLTWA 316
            E++ +R  K +    Y  +    +D ++  S H++ ++L +E LLED ++ + +   R     F   + F+LFP+ IRPK  CL++GG G+RS LH DP++W G N+ LEG K+WTF PP          ADL L            R+ P AW+ E        ++AGW+S D DLY    E+F   +      V  +    Q L+   G L +             P +++A Q  N      V+ HML W+
Sbjct:  139 EIEFQRRCKGSTSLEYE-SFEDFID-IVFDSKHDDYYFLFDESLLEDKESLRKRISLRQD---FFPGNLFELFPKSIRPKDSCLVIGGVGSRSTLHADPYDWMGWNFCLEGSKLWTFLPPSFCGERVAARADLELLISLEADDKSSYRLEPNAWDAEDEQMTNFSLAAGWQS-DNDLYR---EMFATGI------VWMEQNSQQNLIN-LGRLEI-------------PSIAIASQYANLAGFDRVLNHMLDWS 363          
BLAST of EWM25021.1 vs. NCBI_GenBank
Match: gi|397574750|gb|EJK49361.1| (hypothetical protein THAOC_31769, partial [Thalassiosira oceanica])

HSP 1 Score: 99.3673 bits (246), Expect = 3.420e-19
Identity = 93/308 (30.19%), Postives = 140/308 (45.45%), Query Frame = 0
Query:   85 QDVELEVQLKRNSKIAKPRLYSGTLAGIVDGMMQKSTHEEAWYLLNEKLLEDS------QNRKIKD----PFRLPPSLFGKLDYFDLFPQRIRPKKHCLILGGTGARSFLHVDPFEWTGVNYLLEGRKIWTF-FPPCSADLGLK---------RVLPEAWEGE-----------VSAGWKSTDFDLYYKVPEIFEGAVT-LDLPEVLADV-------------------EGVQAL------------------VQEEGELVVIPPGWAHQVYHLKPGLSLAWQVCNHGNLKNVIMHMLTWAIESGGNL 323
            Q+V+L+ +++R+    +  +YS  L+  +D +M  S+H++A++   E LL  S       +RK++     PF   PS      +FD FP+ +RP    +IL G GA S LH DPFEWTG +  LEG KIW F  PP     G++         R+   AWE E           +SAGW+S D  LY  V E F  A    ++ E+ +DV                   E + AL                  +Q  G+L++IP    HQ Y   P +++A Q  +    + VI H+L+ +     NL
Sbjct:   88 QEVDLQRKIRRDGS-PETEIYSMPLSETIDFIMD-SSHDDAFFAFCEGLLPCSIPGSEILSRKLEAVRDAPFPGVPS------WFDFFPRHLRPSD-AVILAGAGASSTLHRDPFEWTGTSLCLEGTKIWRFVLPPADEQGGVEIVDRFLSSYRLESIAWEDEERGDPSDSTTIISAGWQS-DLSLYDFVDEDFRTAFEWFEMEELDSDVFEVNLERAAVDGSSLKPSMETLDALNGIRGTKGGASEPNFVTAIQRPGDLLIIPAHCWHQTYGPVPSIAIASQRFDSSIARRVIDHILSVSKTDTRNL 385          
BLAST of EWM25021.1 vs. NCBI_GenBank
Match: gi|390333184|ref|XP_003723657.1| (PREDICTED: F-box protein At1g78280 [Strongylocentrotus purpuratus])

HSP 1 Score: 89.3521 bits (220), Expect = 3.864e-16
Identity = 50/158 (31.65%), Postives = 83/158 (52.53%), Query Frame = 0
Query:  152 LFGKLDYFDLFPQRIRPKKHCLILGGTGARSFLHVDPFEWTGVNYLLEGRKIWTFFPPCSADLGLKRVLPEAWEGEVSAGWKSTDFDLYYKVPEIFEGAVTLDLPEVLADVEGVQALVQEEGELVVIPPGWAHQVYHLKPGLSLAWQVCNHGNLKNVI 309
            ++ + D+F +FP+ IRP    ++ G   +RS LH+DP+ WTG N ++ G+K W  +PP   DL      P       ++G+   +   Y    + F+    LD     A   G+Q + Q  GEL++IP GW HQ +++K   +++ QV N  N K ++
Sbjct:  148 MYLQEDFFQIFPEEIRPWNAMMLWGTAHSRSALHIDPYNWTGTNAVIWGKKRWKLYPPGQDDLLYATTNP-------NSGF-PLNCHTYSSPIDAFDP--DLDAYPDFAKARGIQ-VEQNPGELLIIPTGWFHQAFNVKETFAISSQVMNLANYKIIL 294          
BLAST of EWM25021.1 vs. NCBI_GenBank
Match: gi|195997497|ref|XP_002108617.1| (hypothetical protein TRIADDRAFT_51707 [Trichoplax adhaerens] >gi|190589393|gb|EDV29415.1| hypothetical protein TRIADDRAFT_51707 [Trichoplax adhaerens])

HSP 1 Score: 89.7373 bits (221), Expect = 5.000e-16
Identity = 57/191 (29.84%), Postives = 97/191 (50.79%), Query Frame = 0
Query:  126 WYLLNEKLLEDSQNRKIKDPFRLPPSLFGKLDYFDLFPQRIRPKKHCLILGGTGARSFLHVDPFEWTGVNYLLEGRKIWTFFPPCSADLGLKRVLPEAWEGEVSAGWKSTDFDLYYKVPEIFEGAVTLDLPEVLADVEGVQALVQEEGELVVIPPGWAHQVYHLKPGLSLAWQVCNHGNLKNVIMHMLTWA 316
            W+ + ++L  +  ++   D   +  +++ K ++F LFP+ IRP    L+ G   +RS LH+DP+ WTG N +L GRK W  FPP   +     + P    G     +K       Y  P I    +  +   +  +V  ++ + Q  GEL++IPPGW HQVY+    ++++ Q+ N  N  N+I+  +  A
Sbjct:  184 WHYVQDELFINRHDKLKAD---IGEAIYFKENFFKLFPEEIRPWDAMLLWGSAHSRSHLHIDPYNWTGTNAVLHGRKRWKLFPPGQDNKFY--ITPNQMCGFPLNCYK-------YNSP-IDSFNIDDEKYPLFRNVNYIE-IEQNAGELLIIPPGWFHQVYNPVETIAISSQIMNSKNY-NIILKEIIAA 359          
BLAST of EWM25021.1 vs. NCBI_GenBank
Match: gi|676399045|ref|XP_009042800.1| (expressed protein, partial [Aureococcus anophagefferens] >gi|323446278|gb|EGB02501.1| expressed protein, partial [Aureococcus anophagefferens])

HSP 1 Score: 88.1965 bits (217), Expect = 5.568e-16
Identity = 71/202 (35.15%), Postives = 102/202 (50.50%), Query Frame = 0
Query:  120 STHEEAWYLLNEKLLE--DSQNRKIKDPFRLPPSLFG-KLDYFDLFPQRIRPKKHCLILGGTGARSFLHVDPFEWTGVNYLLEGRKIWTF-FPPCSADLGLKRVLPEAWEGEVSAGWKSTDFDLYYKV-----PEIF----------------EGAVTLDLPEVLADVEGVQALVQEEGELVVIPPGWAHQVYHLKPGLSLA 296
            S+H    +L +E LL+  D        P R   ++FG +  +FD FP+  RP+  C++  G GARS LH DP++WTG +  +EG K+W F      ADLG   +  EA+ G+ SAG +S D DLY +      PE +                  A  + LP+       V AL Q  G++VV+PP   HQ Y L+P L++A
Sbjct:  102 SSHALPSFLFDEFLLDGDDDLRGAAVGPQR---AIFGGERSWFDHFPESRRPRDGCVVGAGAGARSPLHRDPYDWTGTSLCVEGSKVWRFALDVADADLGAYELASEAFGGD-SAGTQS-DADLYARRVGDGWPEPYAYDDDPALAATWSAAARFAPDVALPKT---ARFVTAL-QRAGDVVVVPPRAWHQTYALEPSLAVA 294          
BLAST of EWM25021.1 vs. NCBI_GenBank
Match: gi|676429887|ref|XP_009045747.1| (hypothetical protein LOTGIDRAFT_237632 [Lottia gigantea] >gi|556114865|gb|ESP03517.1| hypothetical protein LOTGIDRAFT_237632 [Lottia gigantea])

HSP 1 Score: 89.7373 bits (221), Expect = 5.755e-16
Identity = 74/271 (27.31%), Postives = 123/271 (45.39%), Query Frame = 0
Query:   36 LDAR-DLPSQQALDAYIKKGPCVLTHAFDKDPNTRKMADDTFSDTFFEEFQDVELEVQLKRNSKIAKPRLYSGTLAGIVDGMMQKSTHEEAWYLLNEKLLEDSQNRKIKDPFRLPPSLFGKLDYFDLFPQRIRPKKHCLILGGTG-ARSFLHVDPFEWTGVNYLLEGRKIWTFFPPCSADLGLKRVLPEAWEGEVSAGWKSTDFDLYYKVPEIFEGAVTLDLPEVLADVEGVQALVQEEGELVVIPPGWAHQVYHLKPGLSLAWQVCNHGN 304
            +D R D+  ++  D Y  K P V+T      P     A    SD F + + +  + ++    S +   +  +  L   +  +   +TH   W  L ++L      R+     ++P +L+ + D+F +FP+ IRP   C+ L GT  +RSFLH+DP+ WTG N +L+G K W  FPP    L   R          + G+    F  Y    + F         +    +E    L Q  G+ ++IPPGW HQ Y+++  ++++ Q  N  N
Sbjct:  110 IDKRSDMSLEEFWDVYDGKWPVVITDVISDWP-----ARQWTSDYFIQNYGEARVVMKAVHGS-LDDAKGLALPLNLFIKHLNHSTTH--TWTYLEDELFIP---RRPHLSQQVPRNLYTEEDFFRMFPKEIRPWD-CMFLWGTAHSRSFLHIDPYNWTGTNAVLKGHKKWKLFPPGQDHLLSIRY-------HRTCGFPLDCFK-YNSEIDTFTDTEKYSQYKQATYIE----LDQYPGDFLIIPPGWFHQAYNVEETMAISGQYMNRNN 356          
BLAST of EWM25021.1 vs. NCBI_GenBank
Match: gi|1176117601|ref|XP_020629976.1| (F-box protein At1g78280-like [Orbicella faveolata])

HSP 1 Score: 89.3521 bits (220), Expect = 8.230e-16
Identity = 71/239 (29.71%), Postives = 108/239 (45.19%), Query Frame = 0
Query:  124 EAWYLLNEKLLEDSQNRKIKDPFRLPPSLFGKLDYFDLFPQRIRPKKHCLILGGTGARSFLHVDPFEWTGVNYLLEGRKIWTFFPPCSADLGLKRVLPEAWEGEVSAGWK-STDFDLY---YKVPEIFEGAVTLDLPEVLADVEGVQALVQEEGELVVIPPGWAHQVYHLKPGLSLAWQVCNHGNLKNVIMHMLTWAIESGGNLRHAQERPLHGGKAGLGQMEGTQEHVTRMVEIICQD 358
            E W  L ++L  +  N +++D    P  ++ K D+F L P+ IRP    L+ G   +RS LH+DP+ WTG N +L G+K+W  +PP    L   R       G     WK ++  D Y   YK    F  A  +             +  QE G+L +IP GW HQ Y+    ++++ QV N  N K V+       I  GG +   +         G+      +E V  +V+II +D
Sbjct:  188 EVWTYLEDELFIE-MNPELRDYLGQP--VYLKEDFFQLLPKEIRPWNAMLLWGTAHSRSSLHIDPYNWTGTNAVLSGKKMWKLYPPGQDHLLYVRQHQRC--GFPLDCWKYNSPIDAYNPDYKQYPKFRQAKAI-------------SFTQEAGDLFIIPTGWFHQAYNPVETMAISSQVMNSQNYKLVLDE-----IYKGGEVDRKK-------LPGIFDSLSAREQVEAVVKIIPKD 396          
The following BLAST results are available for this feature:
BLAST of EWM25021.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106656|gb|EWM25021.1|0.000e+0100.00f-box protein [Nannochloropsis gaditana][more]
gi|299473168|emb|CBN78744.1|3.846e-4733.60conserved unknown protein [Ectocarpus siliculosus][more]
gi|1129203092|gb|OLQ05774.1|3.257e-2832.30Bifunctional arginine demethylase and lysyl-hydrox... [more]
gi|551667017|ref|XP_005836269.1|9.473e-2331.10hypothetical protein GUITHDRAFT_162130 [Guillardia... [more]
gi|397574750|gb|EJK49361.1|3.420e-1930.19hypothetical protein THAOC_31769, partial [Thalass... [more]
gi|390333184|ref|XP_003723657.1|3.864e-1631.65PREDICTED: F-box protein At1g78280 [Strongylocentr... [more]
gi|195997497|ref|XP_002108617.1|5.000e-1629.84hypothetical protein TRIADDRAFT_51707 [Trichoplax ... [more]
gi|676399045|ref|XP_009042800.1|5.568e-1635.15expressed protein, partial [Aureococcus anophageff... [more]
gi|676429887|ref|XP_009045747.1|5.755e-1627.31hypothetical protein LOTGIDRAFT_237632 [Lottia gig... [more]
gi|1176117601|ref|XP_020629976.1|8.230e-1629.71F-box protein At1g78280-like [Orbicella faveolata][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5689rna5689Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications