rna5681, rna5681 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna5681
Unique Name	rna5681
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	3704
Alignment location	CM002466.1:570127..571427 +

Link to JBrowse

Properties


Property Name	Value
Product	putative cleavage-induced protein
Orig transcript id	gnl\|cribi\|Naga_100068g16.2424.mrna
Orig protein id	gnl\|cribi\|Naga_100068g16.2424
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002466.1	supercontig	CM002466.1:570127..571427 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100068g16	gene5489	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna5681	rna5681-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM25000.1	cds5666	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002466.1:570127..571427+
coding sequence from alignment at CM002466.1:570127..571427+

mRNA sequence

>rna5681 ID=rna5681|Name=rna5681|organism=Nannochloropsis gaditana|type=mRNA|length=3704bp
GGAGCACGACGACAGGGCACGCTCCACCTTTTAGGCAGACTACCTGCTGA
CGCCACAACCCTGTCCGGTAGCTCTTCCATTCTTTTGCCCTGCTTTCACG
TTTCCGCTGCTTTGGAAGGCCTTTCCTGATAAGCCCTAAAAGCTCCCTCA
AGCATGATTCGCGTAGGCTCTAGAATACGTACATGTTTCAAAATGCTGGC
ATTCGTGGCAGCAGTCCATCTTGTCTTTCTCGCCTCGTCGCAAAGGAAAG
GTACGTGCGCCTGTACAAGTGAGTGCCATGCCGGGCATTTAAGGGGGGAC
AAAGCCTCGGCAAAAGTTCCTAATCGCCGTATGCATGCCGGACGCCTATG
AGCCGTCTATTGATTGGACCATTGTCATGTGCCACAATGTATGTGATTCT
CGGGTCCTCCATTCTTTTCCGACGTGAACCTGAATGTGTGTACCCGGTAA
AGTTATATCAATGCTGGATCTATTCCCTTGTACACATTTTTGCGATTGCG
ATGCGCCTCCGCCATGACTTAGATGATACTTTCCCTCCCCTCCTAAAGTC
ATGAGTCTAGACCAATTCAGGGACCTGGAGGAACATCCATCCCCTTCATC
CGATGGGCCTCCTCAGTACAGTGCTCTATCTGCATCCTCTCGCGACCCCC
CTGTGCGAGCCTCTAATTTCCTCCTTGACATGGCCACAAGCGCTCTACAT
GACATTGCCAAGACAAGTACAGCAGTTGCGGGTAATACGTTGCTTGGTAA
CAAGGGAGAACCCCGTCCGCTGAAATGGGCAATATTTACCCCTCCCAAGT
CCTTTGCCCGTGCTCCACACCAGCACGTCGCTTTACGGTCTTGGTTGAAC
CTTCGAGTGCCACCGCGGGTGTATTTGGTCGAGGCCAAAGACCTGGACAA
GACTGAGATCGCCAACATCCGAGCCCAGTACAACATCGAGTCCTTTCCAG
GGTCCGTCAACGCAGACGGTTTCTTACTGCAGAATGCTTTGTTCCAACGT
GCCTCCATGGAGCAGGATATGGACGTGGTGGTGGTAATCAATTCCGACAT
TATCCTGGGGGACGACTTTGTGGATGCGCTAGAGCACGCTATGGCCAATT
TTGACAGGTTTTTGATGGTGGGCGCCCGGTACGACAATCTGGTCGTGCAG
GACATGCCCCTCGACGCGGACTCGGAGTGGATCCGGGCTTTCCGGGAGAG
GACATGGGAAGAGGGGGCGTTGCATTCGTACGGGGGGACAGACTACTACG
CCTGGCGCCCGGTGGGTGACCCGGCGTTGGCGGTGATAGGCGGCCGTATC
CCACCCTTCACGTACGGGAGGGGCAAAGCAGACAACTGGGTGATTGACAT
GGCCGTAAAATACGGGGTCGTGGAGGTGGTGGACGCCACTACCGCAGTCT
TTGCCGTGCACCCCGCCCATACTTACGAGCCATTGAGTCCGGCAGAGCCT
GCCTCGTCGGGGACAGATGGATCCGAGGTGGAAGAAGTGGAAGAGAAGCT
TGAGGCGGAAGGCAAGGCTTCGGATGGGGAAATGCAAAGGGACCTAGAGG
ATTCTCGGACCGACTATGGAGAGGGGAAACGCCACACCCTCTCTCTAAAA
CGACCGGAAAAACGCAAGCGGAAGGGACATCGATCTCTTGCCAACAGCGA
GGATCTCTCGACGACGGCGAATGCGACGAAGGTTGGGACCATGCCGGTCA
AGTACGTGAATCACTGGTCGAGCGCGTCCGCGGGGGACCCTCAGGCGGAC
ATGAATAAGCACCTGGCCTACCAGTTTGGAGACTTCCAAAACGGGGACGG
CACCCCCTTGCATGCCGTGTGGGAGCTAATGCTCTGCGTGGAGGCAGAAG
CCGGACGGGGCGTGGGAGGAGAAAGAGGGTACATTGAAAAGCCCTGCATT
CGTTACCGTACCCGCCCAGGGGCCTGTCCCTGTGCCCACAGCCCCATGGT
GCCCCGCACCCTTACGGACGTGGAGACGCACGGGCGTGCTCGCGTCTGTG
GAAAGGTGCCATTGGGCTTGCGAGAGGTTTTCGACGAGGATTTCGCTTTT
CAACAGCTGATGAGCCAGCAAGCAAAGGATAAGACGGTCGTGCTTATTGG
TTTCAACTATGGCTACCAAGACATGTTGTTGAACATGGTGTGCAGGCTGC
AGCAGTTGGCGGTTCCCAACTATGTGATTGCCGCGTTTGATGCGGAGGCG
ATGGCTTTTTGCCGCCAGCAGGTGCTACCCTGCTTTCCGGTTAATGCCGA
GATTGCGGCGGATGCAGACATGGTTCTTAAGAATCACGGAGGCGGGAAAG
ACGCGAAGGCAGCGGGTGAGTCGAAGACGGCAAAGACTCCAGGTACGCAA
TCACCATCCAAACCCGTCGACTTGCAAGCAGCCGCGCATGCCTTTGGGAC
GAAGGGTTTCCGAGCATTGACAAAGCTCAAAAGCCAGCAGGTGTTGCGGA
TCCTAGAACAAGGCTACGACGTCCTTTGGTCGGATGTGGACATCTTCTGG
AAGATCAATCCCATCCCTGGCGTGCTGGAAGAGATGAAGGAGGGGGGCGG
GGTGGACATTGCCATCCAATCCAACGCGCCGCCTGAAGAGGCTTCTGAGA
ATGGATATCGTAGGATCAACTCGGGCTTTTATATGGCCAAGAGTAATTCT
CCCACCGTGGAGGCGTTTCGGCAAATTGTCGAGCATGCCCGGTCCAGCAC
TTTGTCGGAGCAGCCATCGTTCTACACAGTTTTGTGCGGCGACGAGATGC
AGTTCGTGTCTGGAAGCTCGTATTGTCTAAACACCGAAATCCCAGTCAAG
ACCCGCCTGCTTTCTCGAGAAATTTATCCCAACGGAGCCATGGTAGAAGT
GGTCAAAGGCGTCACGCCAGCCACAGAGGACGACGTTGCGATCGTTCACT
TCAATTGGCTGGAAGGTCATGACGCCAAGGTGGAGAGTTTCGTGAATGCA
TCCATGTGGCTGCTTCACGACGACGACATGACCTGCAAATACGATATGAT
CCGCGGGAGTGAGGGATTGCAACTCGTTGACACGATGCCTCTTCCCCCTT
CTTATAACCCTCTTCCCAATCCTGACGCTACCCGAAGATTGCGATGGCGC
TCTTAAGCGAAGCGCCCGTGAAAAAAGAGCGCTTGAAGACAGTAGGAGAC
CAGCAAAAGCGTTTGTGTCGCGTGTATCCATGTGTGCATTCTGCATGAAA
TTACATGGCACTGGGAGGTTCATGTTGCGAAGGAAGACTATGATATTTTT
TGCATTGTACCAGGGGAAACCGAATTCATGTCGACTCTGCTACAGGCCTT
AGGCAAAGAGCGCGCGAAGTACAACACTTTCCAGCCTGACATACCCCAGA
CTTCAGGGATGTGCAGGTATGCAAGAGTGGCGACTCACAATTCGAGTGCT
TTTTGTCGCCAGAAAAAACGAAGGCGACCGTTAGCAGCTCGGTGTTGCTT
ACATTGCACTTCTTTGCAGTCAGGTAGTGCTTCCAATCAAGTGTCTATAG
CGTAAGAAATAGCCAAAATCAAAGCTCAAAAGAAGAAAGGGCTGTATTTC
AAAATCAATTTTAGGGTCTAATTTAAGCCGGTCAAGTGGCATGGACATAA
AAAGATGACGCATATACGGATTGAGTGTCACGCCTTTGCGCGGATTATCA
TAAACAAACATATAGCAATAGTGAAAAGGAAGAAAAGCTGCATGTAACTG
ACGA

protein sequence of rna5681

>rna5681-protein ID=rna5681-protein|Name=rna5681|organism=Nannochloropsis gaditana|type=polypeptide|length=298bp
MDRGMPERRPLRRFAPSAGEDLSRPRRFEDSRTPPPYGSRGNSPGLPFEG
ERGMDRMDRSGVGPGGRGVEAAAAAKAAEAAAKAAEQEEKKAKRELEAAK
RAAEEEARRAAKEAEVLRLKEEKEAKAKAAAECADVAKALVASGLKGKEL
WAAAQEKGDAAKGSAILEVVLGSVDSNEALASLGWMAGAQYGTVLKRRLA
KDTTDQKEAVYAVQRVVEARGYPKVGGDPLLEKLFHGLYGADLLDEAAFT
GWRDDDREEGNKRKAVVQTTPWFQWLETADEDDDDEEEDDDIEELNNI

mRNA from alignment at CM002466.1:570127..571427+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna5681 ID=rna5681|Name=rna5681|organism=Nannochloropsis gaditana|type=mRNA|length=1301bp|location=Sequence derived from alignment at CM002466.1:570127..571427+ (Nannochloropsis gaditana)
ggagggatggaccGAGGGATGCCTGAGCGTCGGCCCTTGCGTCGATTTGC
GCCCAGTGCCGGGGAGGACTTGTCGCGGCCGCGCCGTTTTGAGGACAGtc
gcacgccccccccctatGGGAGCCGAGGGAACAGCCCCGGCTTGCCGttc
gagggggagaggggaatgGATCGGATGGACCGCTCCGGTGTGGGgcccgg
tgggaggggggttgaggccgcggcggccgcgAAAGCTGCGGAGGCTGCCG
CCAAAGCGGCCGAacaggaagagaaaaaagcgaagcgggagctggaggcg
gcgaaacGTGCggcagaagaggaagcccggCGGGCTGCCAAGGAAGCGGA
AGTGCTGCgtctgaaggaggagaaggaggcgaaagcaaaggcggcggcgg
aatgTGCCGATGTGGCTAAGGCCTTGGTCGCTTCGGGgttgaaagggaaa
gagctgTGGGCGGCGGCACAGGAAAAGGGCGATGCGGCGAAGGGCTCGGC
GATTTTGGAGGTGGTTCTAGGGTCCGTGGATTCAAacgaggccttggcca
gccTAGGCTGGATGGCGGGGGCCCAGTACGGGACAGTGCTGAAGCGCCGG
CTGGCTAAGGATACAACCGATCAGAAGGAGGCCGTGTACGCGGTGCAACG
GGTCGTGGAGGCAAGAGGATATCCTAAAGTGGGCGGTGACCCCTTGCTGG
AGAAGCTCTTCCATGGCCTGTACGGAGCGGACTTATTGGACGAGGCAGCC
TTCACCGGGTGGCGTGACGACGACCGTGAAGAGGGAAACAAGCGAAAAGC
GGTTGTGCAGACCACGCCCTGGTTCCAATGGCTGGAGACGGCGGacgaag
atgatgatgatgaggaagaggacgatgacaTAGAAGAGTTGAACAATATT
TAATTTTTGGGAGGAATGCATTACTTGACAACTAGAAGGCACACATAGAA
GGTCTGGACAAGAACGAAGTGAATCGTTATGTCTGCTTAACAATACTTGC
GACAAAGTCAAAGCCCAGAGACGACGGTGGAGCAAAGATAGATGAATGCG
GACGAGAAAGAAGTTAGTCCACAACAGCCTCTACGTTCCAATTTCAGCCG
CATGTTGCTAAGACGTCGTCCACAACGGTGACCTGGATTAAGATTTAGAG
CTGAGAAAAGGCATCAATATGGAACAGGCAAATCAAGCAACGAATGAAGT
TTTGGCTGCTTACATTTATGAGCTCTCATCAATTGTTTTCTTTGTAGAAA
CTGCAAGGCAAtcaaggaaggaaataggAATTGCAGTCTCCGCAAGGGAA
A

Coding sequence (CDS) from alignment at CM002466.1:570127..571427+

>rna5681 ID=rna5681|Name=rna5681|organism=Nannochloropsis gaditana|type=CDS|length=897bp|location=Sequence derived from alignment at CM002466.1:570127..571427+ (Nannochloropsis gaditana)
atggaccGAGGGATGCCTGAGCGTCGGCCCTTGCGTCGATTTGCGCCCAG
TGCCGGGGAGGACTTGTCGCGGCCGCGCCGTTTTGAGGACAGtcgcacgc
cccccccctatGGGAGCCGAGGGAACAGCCCCGGCTTGCCGttcgagggg
gagaggggaatgGATCGGATGGACCGCTCCGGTGTGGGgcccggtgggag
gggggttgaggccgcggcggccgcgAAAGCTGCGGAGGCTGCCGCCAAAG
CGGCCGAacaggaagagaaaaaagcgaagcgggagctggaggcggcgaaa
cGTGCggcagaagaggaagcccggCGGGCTGCCAAGGAAGCGGAAGTGCT
GCgtctgaaggaggagaaggaggcgaaagcaaaggcggcggcggaatgTG
CCGATGTGGCTAAGGCCTTGGTCGCTTCGGGgttgaaagggaaagagctg
TGGGCGGCGGCACAGGAAAAGGGCGATGCGGCGAAGGGCTCGGCGATTTT
GGAGGTGGTTCTAGGGTCCGTGGATTCAAacgaggccttggccagccTAG
GCTGGATGGCGGGGGCCCAGTACGGGACAGTGCTGAAGCGCCGGCTGGCT
AAGGATACAACCGATCAGAAGGAGGCCGTGTACGCGGTGCAACGGGTCGT
GGAGGCAAGAGGATATCCTAAAGTGGGCGGTGACCCCTTGCTGGAGAAGC
TCTTCCATGGCCTGTACGGAGCGGACTTATTGGACGAGGCAGCCTTCACC
GGGTGGCGTGACGACGACCGTGAAGAGGGAAACAAGCGAAAAGCGGTTGT
GCAGACCACGCCCTGGTTCCAATGGCTGGAGACGGCGGacgaagatgatg
atgatgaggaagaggacgatgacaTAGAAGAGTTGAACAATATTTAA

Synonyms

Publications