EWM25000.1, cds5666 (CDS) Nannochloropsis gaditana

Overview
NameEWM25000.1
Unique Namecds5666
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:570133..571029 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25000.1
Productputative cleavage-induced protein
Orig transcript idgnl|cribi|Naga_100068g16.2424.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:570133..571029 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0005515protein binding
Vocabulary: INTERPRO
TermDefinition
IPR016024ARM-type_fold
IPR016021MIF4-like_typ_1/2/3
IPR003307W2_domain
Homology
[Close]
BLAST of EWM25000.1 vs. NCBI_GenBank
Match: gi|585106635|gb|EWM25000.1| (putative cleavage-induced protein [Nannochloropsis gaditana])

HSP 1 Score: 582.793 bits (1501), Expect = 0.000e+0
Identity = 298/298 (100.00%), Postives = 298/298 (100.00%), Query Frame = 0 
Query:    1 MDRGMPERRPLRRFAPSAGEDLSRPRRFEDSRTPPPYGSRGNSPGLPFEGERGMDRMDRSGVGPGGRGVEAAAAAKAAEAAAKAAEQEEKKAKRELEAAKRAAEEEARRAAKEAEVLRLKEEKEAKAKAAAECADVAKALVASGLKGKELWAAAQEKGDAAKGSAILEVVLGSVDSNEALASLGWMAGAQYGTVLKRRLAKDTTDQKEAVYAVQRVVEARGYPKVGGDPLLEKLFHGLYGADLLDEAAFTGWRDDDREEGNKRKAVVQTTPWFQWLETADEDDDDEEEDDDIEELNNI 298
            MDRGMPERRPLRRFAPSAGEDLSRPRRFEDSRTPPPYGSRGNSPGLPFEGERGMDRMDRSGVGPGGRGVEAAAAAKAAEAAAKAAEQEEKKAKRELEAAKRAAEEEARRAAKEAEVLRLKEEKEAKAKAAAECADVAKALVASGLKGKELWAAAQEKGDAAKGSAILEVVLGSVDSNEALASLGWMAGAQYGTVLKRRLAKDTTDQKEAVYAVQRVVEARGYPKVGGDPLLEKLFHGLYGADLLDEAAFTGWRDDDREEGNKRKAVVQTTPWFQWLETADEDDDDEEEDDDIEELNNI
Sbjct:    1 MDRGMPERRPLRRFAPSAGEDLSRPRRFEDSRTPPPYGSRGNSPGLPFEGERGMDRMDRSGVGPGGRGVEAAAAAKAAEAAAKAAEQEEKKAKRELEAAKRAAEEEARRAAKEAEVLRLKEEKEAKAKAAAECADVAKALVASGLKGKELWAAAQEKGDAAKGSAILEVVLGSVDSNEALASLGWMAGAQYGTVLKRRLAKDTTDQKEAVYAVQRVVEARGYPKVGGDPLLEKLFHGLYGADLLDEAAFTGWRDDDREEGNKRKAVVQTTPWFQWLETADEDDDDEEEDDDIEELNNI 298
[Close]
BLAST of EWM25000.1 vs. NCBI_GenBank
Match: gi|301104104|ref|XP_002901137.1| (hypothetical cleavage-induced protein [Phytophthora infestans T30-4] >gi|262101071|gb|EEY59123.1| hypothetical cleavage-induced protein [Phytophthora infestans T30-4])

HSP 1 Score: 82.8037 bits (203), Expect = 3.510e-14
Identity = 53/149 (35.57%), Postives = 83/149 (55.70%), Query Frame = 0 
Query:  135 DVAKALVASGLKGKELWAAAQE---KGDAAKGSAILEVVLGSVDSNEALASLGWMAGAQYGTVLKRRL-AKDTTDQKEAVYAVQRVVEARGYPKVGGDPLLEKLFHGLYGADLLDEAAFTGWRDD-DREEGNKRKAVVQTTPWFQWLET 278
            +  K ++ASG KG+EL   A+E   K     G+ + E V  + + + A +S  W+A   YG +LK  + + D  DQ EA+YA+Q  +    +PK     ++EK F  LY  D++DEA F  ++ D D +   + KA++QT+ W  WLET
Sbjct:  275 ETMKQVLASGKKGEELAEVAKEIFKKNGRPSGAVLFETVTAAAE-DVAKSSANWIALPAYGELLKFGMESADKKDQMEALYALQIFLNKHEFPK----GVIEKCFMALYSLDIIDEAGFFEYKYDVDGDVPGRMKAIIQTSTWLTWLET 418
[Close]
BLAST of EWM25000.1 vs. NCBI_GenBank
Match: gi|298707056|emb|CBJ29858.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 83.1889 bits (204), Expect = 4.059e-14
Identity = 40/99 (40.40%), Postives = 58/99 (58.59%), Query Frame = 0 
Query:  183 LGWMAGAQYGTVLKR-RLAKDTTDQKEA-VYAVQRVVEARGYPKVGGDPLLEKLFHGLYGADLLDEAAFTGWRDD-DREEGNKRKAVVQTTPWFQWLET 278
            + WM   ++G  L      KD+T Q+   +YAV       G+PK+GG  +++ +F G+Y  DL +E AF  W+DD D     + KAV+QTTPWF WLE+
Sbjct:  531 MKWMGKDEFGPALTALSTGKDSTQQQMGMIYAVVAKCHQLGFPKIGGAAVVQTIFMGMYNDDLCEEEAFIEWKDDVDSTAEGRMKAVMQTTPWFVWLES 629
[Close]
BLAST of EWM25000.1 vs. NCBI_GenBank
Match: gi|568022937|gb|ETL97001.1| (hypothetical protein L917_05643 [Phytophthora parasitica])

HSP 1 Score: 82.0333 bits (201), Expect = 6.143e-14
Identity = 53/149 (35.57%), Postives = 81/149 (54.36%), Query Frame = 0 
Query:  135 DVAKALVASGLKGKELWAAAQE---KGDAAKGSAILEVVLGSVDSNEALASLGWMAGAQYGTVLKRRLA-KDTTDQKEAVYAVQRVVEARGYPKVGGDPLLEKLFHGLYGADLLDEAAFTGWRDD-DREEGNKRKAVVQTTPWFQWLET 278
            +  K ++ASG KG+EL   A+E   K     G+ + E V  + + + A +S  W+A   YG +LK  +   D  DQ EA+YA+Q  +    +PK     L+EK F  LY  D++DE  F  ++ D D +   + KA++QT+ W  WLET
Sbjct:  266 ETMKKVLASGKKGEELAEVAKEIFKKNGRPSGAVVFEAVTAAAE-DVAKSSANWIALPAYGELLKFAMEDSDKKDQMEALYALQVFLNKYDFPK----GLIEKCFMALYSLDIIDETGFFEYKYDVDGDVPGRMKAIIQTSTWLTWLET 409
[Close]
BLAST of EWM25000.1 vs. NCBI_GenBank
Match: gi|970627910|gb|KUF75703.1| (Eukaryotic translation initiation factor 4 gamma 2 [Phytophthora nicotianae])

HSP 1 Score: 82.0333 bits (201), Expect = 6.441e-14
Identity = 53/149 (35.57%), Postives = 81/149 (54.36%), Query Frame = 0 
Query:  135 DVAKALVASGLKGKELWAAAQE---KGDAAKGSAILEVVLGSVDSNEALASLGWMAGAQYGTVLKRRLA-KDTTDQKEAVYAVQRVVEARGYPKVGGDPLLEKLFHGLYGADLLDEAAFTGWRDD-DREEGNKRKAVVQTTPWFQWLET 278
            +  K ++ASG KG+EL   A+E   K     G+ + E V  + + + A +S  W+A   YG +LK  +   D  DQ EA+YA+Q  +    +PK     L+EK F  LY  D++DE  F  ++ D D +   + KA++QT+ W  WLET
Sbjct:  266 ETMKKVLASGKKGEELAEVAKEIFKKNGRPSGAVVFEAVTAAAE-DVAKSSANWIALPAYGELLKFAMEDSDKKDQMEALYALQVFLNKYDFPK----GLIEKCFMALYSLDIIDETGFFEYKYDVDGDVPGRMKAIIQTSTWLTWLET 409
[Close]
BLAST of EWM25000.1 vs. NCBI_GenBank
Match: gi|566027628|gb|ETI50539.1| (hypothetical protein F443_05942 [Phytophthora parasitica P1569] >gi|567964943|gb|ETK90420.1| hypothetical protein L915_05820 [Phytophthora parasitica] >gi|570331329|gb|ETO79277.1| hypothetical protein F444_05995 [Phytophthora parasitica P1976] >gi|570955053|gb|ETP20310.1| hypothetical protein F441_05948 [Phytophthora parasitica CJ01A1])

HSP 1 Score: 82.0333 bits (201), Expect = 6.565e-14
Identity = 53/149 (35.57%), Postives = 81/149 (54.36%), Query Frame = 0 
Query:  135 DVAKALVASGLKGKELWAAAQE---KGDAAKGSAILEVVLGSVDSNEALASLGWMAGAQYGTVLKRRLA-KDTTDQKEAVYAVQRVVEARGYPKVGGDPLLEKLFHGLYGADLLDEAAFTGWRDD-DREEGNKRKAVVQTTPWFQWLET 278
            +  K ++ASG KG+EL   A+E   K     G+ + E V  + + + A +S  W+A   YG +LK  +   D  DQ EA+YA+Q  +    +PK     L+EK F  LY  D++DE  F  ++ D D +   + KA++QT+ W  WLET
Sbjct:  266 ETMKKVLASGKKGEELAEVAKEIFKKNGRPSGAVVFEAVTAAAE-DVAKSSANWIALPAYGELLKFAMEDSDKKDQMEALYALQVFLNKYDFPK----GLIEKCFMALYSLDIIDETGFFEYKYDVDGDVPGRMKAIIQTSTWLTWLET 409
[Close]
BLAST of EWM25000.1 vs. NCBI_GenBank
Match: gi|675164947|ref|XP_008891358.1| (hypothetical protein PPTG_02109 [Phytophthora parasitica INRA-310] >gi|568107433|gb|ETN22057.1| hypothetical protein PPTG_02109 [Phytophthora parasitica INRA-310])

HSP 1 Score: 81.6481 bits (200), Expect = 7.037e-14
Identity = 53/149 (35.57%), Postives = 81/149 (54.36%), Query Frame = 0 
Query:  135 DVAKALVASGLKGKELWAAAQE---KGDAAKGSAILEVVLGSVDSNEALASLGWMAGAQYGTVLKRRLA-KDTTDQKEAVYAVQRVVEARGYPKVGGDPLLEKLFHGLYGADLLDEAAFTGWRDD-DREEGNKRKAVVQTTPWFQWLET 278
            +  K ++ASG KG+EL   A+E   K     G+ + E V  + + + A +S  W+A   YG +LK  +   D  DQ EA+YA+Q  +    +PK     L+EK F  LY  D++DE  F  ++ D D +   + KA++QT+ W  WLET
Sbjct:  276 ETMKKVLASGKKGEELAEVAKEIFKKNGRPSGAVVFEAVTAAAE-DVAKSSANWIALPAYGELLKFAMEDSDKKDQMEALYALQVFLNKYDFPK----GLIEKCFMALYSLDIIDETGFFEYKYDVDGDVPGRMKAIIQTSTWLTWLET 419
[Close]
BLAST of EWM25000.1 vs. NCBI_GenBank
Match: gi|567993659|gb|ETL43834.1| (hypothetical protein L916_05753, partial [Phytophthora parasitica] >gi|568053308|gb|ETM50150.1| hypothetical protein L914_05767, partial [Phytophthora parasitica])

HSP 1 Score: 82.0333 bits (201), Expect = 7.593e-14
Identity = 53/149 (35.57%), Postives = 81/149 (54.36%), Query Frame = 0 
Query:  135 DVAKALVASGLKGKELWAAAQE---KGDAAKGSAILEVVLGSVDSNEALASLGWMAGAQYGTVLKRRLA-KDTTDQKEAVYAVQRVVEARGYPKVGGDPLLEKLFHGLYGADLLDEAAFTGWRDD-DREEGNKRKAVVQTTPWFQWLET 278
            +  K ++ASG KG+EL   A+E   K     G+ + E V  + + + A +S  W+A   YG +LK  +   D  DQ EA+YA+Q  +    +PK     L+EK F  LY  D++DE  F  ++ D D +   + KA++QT+ W  WLET
Sbjct:  301 ETMKKVLASGKKGEELAEVAKEIFKKNGRPSGAVVFEAVTAAAE-DVAKSSANWIALPAYGELLKFAMEDSDKKDQMEALYALQVFLNKYDFPK----GLIEKCFMALYSLDIIDETGFFEYKYDVDGDVPGRMKAIIQTSTWLTWLET 444
[Close]
BLAST of EWM25000.1 vs. NCBI_GenBank
Match: gi|570990219|gb|ETP48246.1| (hypothetical protein F442_05980, partial [Phytophthora parasitica P10297])

HSP 1 Score: 81.6481 bits (200), Expect = 9.100e-14
Identity = 53/149 (35.57%), Postives = 81/149 (54.36%), Query Frame = 0 
Query:  135 DVAKALVASGLKGKELWAAAQE---KGDAAKGSAILEVVLGSVDSNEALASLGWMAGAQYGTVLKRRLA-KDTTDQKEAVYAVQRVVEARGYPKVGGDPLLEKLFHGLYGADLLDEAAFTGWRDD-DREEGNKRKAVVQTTPWFQWLET 278
            +  K ++ASG KG+EL   A+E   K     G+ + E V  + + + A +S  W+A   YG +LK  +   D  DQ EA+YA+Q  +    +PK     L+EK F  LY  D++DE  F  ++ D D +   + KA++QT+ W  WLET
Sbjct:  274 ETMKKVLASGKKGEELAEVAKEIFKKNGRPSGAVVFEAVTAAAE-DVAKSSANWIALPAYGELLKFAMEDSDKKDQMEALYALQVFLNKYDFPK----GLIEKCFMALYSLDIIDETGFFEYKYDVDGDVPGRMKAIIQTSTWLTWLET 417
[Close]
BLAST of EWM25000.1 vs. NCBI_GenBank
Match: gi|1072224740|gb|OEU09489.1| (hypothetical protein FRACYDRAFT_271354 [Fragilariopsis cylindrus CCMP1102])

HSP 1 Score: 79.7221 bits (195), Expect = 1.497e-13
Identity = 36/95 (37.89%), Postives = 55/95 (57.89%), Query Frame = 0 
Query:  184 GWMAGAQYGTVLKRRLAKDTTDQKEAVYAVQRVVEARGYPKVGGDPLLEKLFHGLYGADLLDEAAFTGWRDDDR--EEGNKRKAVVQTTPWFQWL 276
            GW   A+YG  L   +  D   QKE ++AVQ+  ++ G PK+  + +++ +F  +Y  DL D+  FT W++D+    E  K KAV+QT  WF WL
Sbjct:  181 GWAESAKYGAALVSLVEDDLLKQKEILFAVQKYSQSLGMPKLDDEYVVQAMFRAMYKFDLADDETFTLWKEDESPEHEAGKLKAVIQTVDWFNWL 275
The following BLAST results are available for this feature:
BLAST of EWM25000.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106635|gb|EWM25000.1|0.000e+0100.00putative cleavage-induced protein [Nannochloropsis... [more]
gi|301104104|ref|XP_002901137.1|3.510e-1435.57hypothetical cleavage-induced protein [Phytophthor... [more]
gi|298707056|emb|CBJ29858.1|4.059e-1440.40conserved unknown protein [Ectocarpus siliculosus][more]
gi|568022937|gb|ETL97001.1|6.143e-1435.57hypothetical protein L917_05643 [Phytophthora para... [more]
gi|970627910|gb|KUF75703.1|6.441e-1435.57Eukaryotic translation initiation factor 4 gamma 2... [more]
gi|566027628|gb|ETI50539.1|6.565e-1435.57hypothetical protein F443_05942 [Phytophthora para... [more]
gi|675164947|ref|XP_008891358.1|7.037e-1435.57hypothetical protein PPTG_02109 [Phytophthora para... [more]
gi|567993659|gb|ETL43834.1|7.593e-1435.57hypothetical protein L916_05753, partial [Phytopht... [more]
gi|570990219|gb|ETP48246.1|9.100e-1435.57hypothetical protein F442_05980, partial [Phytopht... [more]
gi|1072224740|gb|OEU09489.1|1.497e-1337.89hypothetical protein FRACYDRAFT_271354 [Fragilario... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5681rna5681Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications