rna5676, rna5676 (mRNA) Nannochloropsis gaditana

Overview
Namerna5676
Unique Namerna5676
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1574
Alignment locationCM002466.1:549657..550922 +

Link to JBrowse

Properties
Property NameValue
Producth aca ribonucleoprotein complex subunit 1
Orig transcript idgnl|cribi|Naga_100068g11.2425.mrna
Orig protein idgnl|cribi|Naga_100068g11.2425
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:549657..550922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100068g11gene5484Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna5676rna5676-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM25001.1cds5661Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna5676 ID=rna5676|Name=rna5676|organism=Nannochloropsis gaditana|type=mRNA|length=1574bp
AAATTTAAAGTACAGCGCGGTGAACCAGTGACTCATTGGAAAAAGAAAAT
GGTCAGTGTCTGTGCTTGATTCGGCGGCAAAAAGCAGCACAATGACAAAA
AGAGAAGAACGACGCATTCGACCTCCTCCCCTCCACTGAACACCTTGGCT
TGCCTTGATCGCATGCGCGTCGTCTTCTTCCCCGCGGCTGGCGTTGATAA
GGCGCCATGTACATGCGCGTCACATATGAAAAGATTGATTCTGTTTCATT
TCTGTCGCTTTTCAGATTGAAGGCCTAGGTTTTGGTCCTTGGTGGCCGCG
AGGATCTTCCTACTAGACAGCCATGGAGGACGACAGGATGCAGCGCCTTC
ACGATACATTGGACAAGCTACGACCTCGGGGCAAGACGGGTGGCTTGGGT
TTCAATTCAGGCTTTGGGCCCAAAAAGACAGACGATGGTTTGCCTAAAAA
TGGCCTGTACGCCTATTTTGTGCGAGCGGGTCATGGTGGATACAAGAAGT
GGGGGGATGACGATATTGCAGAGGTGAAGCCAGAAAGCGAAGGAGAAAGC
AGCTTGCCTGTGCGTGGCTACATCAAGAAGGAGAAGAGGAAGAAAGAGAA
GAGATCAAAAGGGGAAGATGCAAGCAAAAAACGGAAAGACATTTTATTAA
CAGCGTCTGAGAAGCAAGAGGGAGGAGAACCTCCCAGGAAGCGGCGACGG
CAGAGACTGGAGGAGGCCGTGAGTTGGGAGGCGCTTCAGAATCCTCAGGC
AGGCGATGCGACGGTGGCGGGAGACATCAAGTTTTCCTGGCACAAACATA
TCAAGAGGGTTCTGAAGGCGGCGGAGGAGAATAAAGTTCCCTTGAGGCAG
CTGAGAAAGCAGGTTGTCGCCCTGGCATTGGAAAGGACCAGCTCCCGAAC
CGCCAAGGGAAGTGTTGCAGGGACGCAGAGTAAGAAGGCCTTAAAGCATG
CATTTCACCGTGCTGTGGACACCCACGACTTGCTGCACGTGGAGGATGGA
GTGGTGCACTACCGAAACGCAGAAAAAGCGGTCGGGGGGGCCGCGTATGG
AAGGCAAAAACATGACGTGGTGACAGCGGCGAAGAAGGGGGCTTTTGCCA
TGAAGGGAGAGGGGGGGAGCGATACAGAAGAGCAAAGGGAGCAGAAGAGA
AGGAAGAGCAGGTCAGGAGGAAATAACAAAAGCGCAAAGGCCGTCGATCG
CGTCGAGATTGCAGAGAGGAAGAAATCTCTGAGCAAAGCCGAGTCAACTG
AAAGGCTCTCCACCGAAGCGGCGGGGAAAGACATCGCATTTGCAGATCGG
GCAGAAAAGAAGAAGAAGAAAAATAAAAAAGGAAGCGCGCTCGAGGAAGA
GAAAAAGAAGGAGGCGACAAGCATGAACGAGGCCAAGAAGGCCTCTGGCA
AGAGGAACAAGCATTGAATTTGCAGCTGGAGATATCATGACTTGGAATCT
TTTGCATGCTATTTTGAGGCCTCGAGGCAGCCATGTGAAAAAAAGAGGGA
AGAACGGGAAGGGAGACGGAGTAAAGTACAAAAACAACTCACAGAAGATG
ACGAGACGTGAAAAGAATGTCCTG
back to top

protein sequence of rna5676

>rna5676-protein ID=rna5676-protein|Name=rna5676|organism=Nannochloropsis gaditana|type=polypeptide|length=149bp
MLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDTGVSA
KSFKAEDKLYIGTDKLLPLSRFTGGGGGGGGRGRGGGRGGGRGGGRGFGA
RGGGGGRGPGRGFGGGRSFGGRGGGFSPRGRGPPRGGGGFRGGGGRGRF
back to top

mRNA from alignment at CM002466.1:549657..550922+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna5676 ID=rna5676|Name=rna5676|organism=Nannochloropsis gaditana|type=mRNA|length=1266bp|location=Sequence derived from alignment at CM002466.1:549657..550922+ (Nannochloropsis gaditana)
GCGCCTTATCAACGCCAGccgcggggaagaagacgacgcgCATGCGATCA
AGGCAAGCCAAGGTGTtcagtggaggggaggaggtcgaatGCGTCgttct
tctctttttgtcATTGTGCTGCTTTTTGCCGCCGAATCAAGCACAGACAC
TGaccattttctttttccaaTGAGTCACTGGTTCACCGCGCTGTACTTTA
AATTTCGTTCGTCCGTGCATGTGGTGGACACAGTTACGGGGTTGCGCGGG
GACGGCTGGCTTGATGCTTGATGTAACCCCTCGCTTCGCATTCTTGTTTG
ACCACAGTTGACGACACCTATCGTCATTTTCCTAACGTTCAAACCACCCC
AAGGGTTTGTAAAGAGATGCGACCGCCTATGCaccgtggtggtggccgtg
gccctccaggacgaggcggcggcttccGAGGAGGTCGAGGTAAGCAACCC
AGGATGATATCCTTTTAATGCGGAAGAGTCCTCGATAACTGCCCTGCCGC
GTTTTAAAAAACCAACTCGAAATCAACATCGatacaggaggaggtggacg
attTGGTTCTGGCCGTGGATACGACGAAGGCCCTCCCGAGCAGgtcgtgg
aggcaggggcgttCGTCCAtgaggtcgagggagagatgcTGATCAAACTG
ACGAACGAGAACATCCCTTATTTCAATGCGGGCATTTTCCTGGAGAACAA
AACCCGCGTAGGAAAAGTAGAAGAGGTGCTAGGACCCATCAATCAGGTAT
ATTTTACGGTGAAGCCCGATACGGGCGTATCAGCCAAGTCCTTTAAGGCC
GAGGACAAGCTTTACATTGGCACGGACaaactcctccctctgtcgcGCTT
TAccggtgggggcggtggaggaggcggaagaggacgaggtggagggcggg
ggggaggaagggggggggggcggggctttGGGGCgcggggcggaggtggg
ggcaggggcccggGTCGGGGTTTTGGGGGCGGACGCAGCTTCGGTGGACG
GGGTGGGGGCTTTTCcccaagaggaagggggccgccgagagggggaggag
gtttcagagggggagggggtaggggTCGGTTTTAGGGCAGGAAgtgaggt
ggtggtggcatgCGTGCCTGTGAATGTGTATTGGCAAGGCGATGGTCGGC
AAGAACGGGAGCAAGAAGAGCACTTTGAACCGGGCAAGGCCATCTGGGAA
CATAGTGAGTGGAAACCGTGCGATGCATGTTTAAAAAGAAGACAAAACGC
GAATTTGGAGACCAAG
back to top

Coding sequence (CDS) from alignment at CM002466.1:549657..550922+

>rna5676 ID=rna5676|Name=rna5676|organism=Nannochloropsis gaditana|type=CDS|length=450bp|location=Sequence derived from alignment at CM002466.1:549657..550922+ (Nannochloropsis gaditana)
atgcTGATCAAACTGACGAACGAGAACATCCCTTATTTCAATGCGGGCAT
TTTCCTGGAGAACAAAACCCGCGTAGGAAAAGTAGAAGAGGTGCTAGGAC
CCATCAATCAGGTATATTTTACGGTGAAGCCCGATACGGGCGTATCAGCC
AAGTCCTTTAAGGCCGAGGACAAGCTTTACATTGGCACGGACaaactcct
ccctctgtcgcGCTTTAccggtgggggcggtggaggaggcggaagaggac
gaggtggagggcgggggggaggaagggggggggggcggggctttGGGGCg
cggggcggaggtgggggcaggggcccggGTCGGGGTTTTGGGGGCGGACG
CAGCTTCGGTGGACGGGGTGGGGGCTTTTCcccaagaggaagggggccgc
cgagagggggaggaggtttcagagggggagggggtaggggTCGGTTTTAG
back to top
Synonyms
Publications