EWM25001.1, cds5661 (CDS) Nannochloropsis gaditana

Overview
NameEWM25001.1
Unique Namecds5661
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002466.1:550292..550741 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM25001.1
Producth aca ribonucleoprotein complex subunit 1
Orig transcript idgnl|cribi|Naga_100068g11.2425.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002466.1supercontigCM002466.1:550292..550741 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0001522pseudouridine synthesis
GO:0042254ribosome biogenesis
Vocabulary: Cellular Component
TermDefinition
GO:0005730nucleolus
GO:0031429box H/ACA snoRNP complex
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Vocabulary: INTERPRO
TermDefinition
IPR009000Transl_B-barrel
IPR021154H/ACA_rnp_Gar1
IPR007504H/ACA_rnp_Gar1/Naf1
Homology
[Close]
BLAST of EWM25001.1 vs. NCBI_GenBank
Match: gi|585106636|gb|EWM25001.1| (h aca ribonucleoprotein complex subunit 1 [Nannochloropsis gaditana])

HSP 1 Score: 262.307 bits (669), Expect = 5.317e-88
Identity = 149/149 (100.00%), Postives = 149/149 (100.00%), Query Frame = 0 
Query:    1 MLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDTGVSAKSFKAEDKLYIGTDKLLPLSRFTGGGGGGGGRGRGGGRGGGRGGGRGFGARGGGGGRGPGRGFGGGRSFGGRGGGFSPRGRGPPRGGGGFRGGGGRGRF 149
            MLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDTGVSAKSFKAEDKLYIGTDKLLPLSRFTGGGGGGGGRGRGGGRGGGRGGGRGFGARGGGGGRGPGRGFGGGRSFGGRGGGFSPRGRGPPRGGGGFRGGGGRGRF
Sbjct:    1 MLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDTGVSAKSFKAEDKLYIGTDKLLPLSRFTGGGGGGGGRGRGGGRGGGRGGGRGFGARGGGGGRGPGRGFGGGRSFGGRGGGFSPRGRGPPRGGGGFRGGGGRGRF 149
[Close]
BLAST of EWM25001.1 vs. NCBI_GenBank
Match: gi|553177729|ref|XP_005852493.1| (H/ACA ribonucleoprotein complex subunit 1, partial [Nannochloropsis gaditana CCMP526] >gi|422296042|gb|EKU23341.1| H/ACA ribonucleoprotein complex subunit 1, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 172.555 bits (436), Expect = 1.100e-52
Identity = 88/88 (100.00%), Postives = 88/88 (100.00%), Query Frame = 0 
Query:    1 MLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDTGVSAKSFKAEDKLYIGTDKLLPLSRFTGGGGGGGGRGRGGGR 88
            MLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDTGVSAKSFKAEDKLYIGTDKLLPLSRFTGGGGGGGGRGRGGGR
Sbjct:   58 MLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDTGVSAKSFKAEDKLYIGTDKLLPLSRFTGGGGGGGGRGRGGGR 145
[Close]
BLAST of EWM25001.1 vs. NCBI_GenBank
Match: gi|1173945666|gb|OQR94264.1| (H/ACA ribonucleoprotein complex subunit [Achlya hypogyna])

HSP 1 Score: 116.701 bits (291), Expect = 5.071e-30
Identity = 54/76 (71.05%), Postives = 63/76 (82.89%), Query Frame = 0 
Query:    1 MLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDTGVSAKSFKAEDKLYIGTDKLLPLSRFTGGG 76
            M+ K TN+ +PYFNAG +LENKT++GKV+E+LG IN V FTVKPD GVSAKSFKA DK+YI  DKLLPLSRFT  G
Sbjct:   58 MVYKSTNDKVPYFNAGTYLENKTKIGKVDEILGAINDVMFTVKPDAGVSAKSFKAGDKVYISPDKLLPLSRFTDQG 133
[Close]
BLAST of EWM25001.1 vs. NCBI_GenBank
Match: gi|675181625|ref|XP_008899697.1| (hypothetical protein PPTG_07283 [Phytophthora parasitica INRA-310] >gi|568100383|gb|ETN15082.1| hypothetical protein PPTG_07283 [Phytophthora parasitica INRA-310])

HSP 1 Score: 116.316 bits (290), Expect = 7.483e-30
Identity = 55/77 (71.43%), Postives = 63/77 (81.82%), Query Frame = 0 
Query:    1 MLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDTGVSAKSFKAEDKLYIGTDKLLPLSRFTGGGG 77
            M+ K TN+ +PYFNAG FLENKTR+GKV+E+LG IN+V FTVKPDTGVSA SF A DK+YI  DKLLPLSRFT   G
Sbjct:   56 MVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSAASFHAGDKVYISPDKLLPLSRFTEKPG 132
[Close]
BLAST of EWM25001.1 vs. NCBI_GenBank
Match: gi|566031859|gb|ETI54770.1| (hypothetical protein F443_02470 [Phytophthora parasitica P1569] >gi|567969542|gb|ETK94627.1| hypothetical protein L915_02352 [Phytophthora parasitica] >gi|567997943|gb|ETL48022.1| hypothetical protein L916_02313 [Phytophthora parasitica] >gi|568027158|gb|ETM01124.1| hypothetical protein L917_02242 [Phytophthora parasitica] >gi|568057641|gb|ETM54298.1| hypothetical protein L914_02342 [Phytophthora parasitica] >gi|570335590|gb|ETO83538.1| hypothetical protein F444_02453 [Phytophthora parasitica P1976] >gi|570959629|gb|ETP24608.1| hypothetical protein F441_02418 [Phytophthora parasitica CJ01A1] >gi|570995788|gb|ETP52565.1| hypothetical protein F442_02438 [Phytophthora parasitica P10297])

HSP 1 Score: 116.316 bits (290), Expect = 7.483e-30
Identity = 55/77 (71.43%), Postives = 63/77 (81.82%), Query Frame = 0 
Query:    1 MLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDTGVSAKSFKAEDKLYIGTDKLLPLSRFTGGGG 77
            M+ K TN+ +PYFNAG FLENKTR+GKV+E+LG IN+V FTVKPDTGVSA SF A DK+YI  DKLLPLSRFT   G
Sbjct:   56 MVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSAASFHAGDKVYISPDKLLPLSRFTEKPG 132
[Close]
BLAST of EWM25001.1 vs. NCBI_GenBank
Match: gi|669151176|ref|XP_008611150.1| (H/ACA ribonucleoprotein complex subunit 1 [Saprolegnia diclina VS20] >gi|530737158|gb|EQC35400.1| H/ACA ribonucleoprotein complex subunit 1 [Saprolegnia diclina VS20])

HSP 1 Score: 116.316 bits (290), Expect = 9.676e-30
Identity = 54/76 (71.05%), Postives = 63/76 (82.89%), Query Frame = 0 
Query:    1 MLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDTGVSAKSFKAEDKLYIGTDKLLPLSRFTGGG 76
            M+ K TN+ +PYFNAG +LENKT++GKV+E+LG IN V FTVKPD GVSAKSFKA DK+YI  DKLLPLSRFT  G
Sbjct:   61 MVYKSTNDKVPYFNAGTYLENKTKIGKVDEILGAINDVMFTVKPDAGVSAKSFKAGDKVYISPDKLLPLSRFTDQG 136
[Close]
BLAST of EWM25001.1 vs. NCBI_GenBank
Match: gi|673029380|ref|XP_008868651.1| (hypothetical protein H310_05663 [Aphanomyces invadans] >gi|574475046|gb|ETW02046.1| hypothetical protein H310_05663 [Aphanomyces invadans])

HSP 1 Score: 114.775 bits (286), Expect = 1.763e-29
Identity = 53/76 (69.74%), Postives = 63/76 (82.89%), Query Frame = 0 
Query:    1 MLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDTGVSAKSFKAEDKLYIGTDKLLPLSRFTGGG 76
            M+ K T++ +PYFNAG FLENKT++GKV+E+LG IN V FTVKPD GV+AKSFKA DK+YI  DKLLPLSRFT  G
Sbjct:   60 MVYKSTSDKVPYFNAGAFLENKTKIGKVDEILGAINDVMFTVKPDAGVTAKSFKAGDKVYISPDKLLPLSRFTDQG 135
[Close]
BLAST of EWM25001.1 vs. NCBI_GenBank
Match: gi|953495679|emb|CEG42575.1| (h aca ribonucleoprotein complex subunit 1 [Plasmopara halstedii])

HSP 1 Score: 114.39 bits (285), Expect = 3.777e-29
Identity = 53/77 (68.83%), Postives = 64/77 (83.12%), Query Frame = 0 
Query:    1 MLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDTGVSAKSFKAEDKLYIGTDKLLPLSRFTGGGG 77
            M+ K +N+ +PYFNAG FLENKTR+GKV+E+LG IN+V FTVKPD+GVSA SF+A DK+YI  DKLLPLSRFT   G
Sbjct:   56 MVYKSSNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDSGVSASSFQAGDKVYISPDKLLPLSRFTEKPG 132
[Close]
BLAST of EWM25001.1 vs. NCBI_GenBank
Match: gi|1214704969|gb|OWZ16743.1| (H/ACA ribonucleoprotein complex subunit [Phytophthora megakarya])

HSP 1 Score: 114.39 bits (285), Expect = 4.728e-29
Identity = 53/77 (68.83%), Postives = 64/77 (83.12%), Query Frame = 0 
Query:    1 MLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDTGVSAKSFKAEDKLYIGTDKLLPLSRFTGGGG 77
            M+ K TN+ +PYFNAG FLENKTR+GKV+E+LG IN+V FTVKPDTGVSA SF+A DK++I  DKLLPL+RFT   G
Sbjct:   56 MVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSASSFQAGDKVFISPDKLLPLARFTEKPG 132
[Close]
BLAST of EWM25001.1 vs. NCBI_GenBank
Match: gi|695430714|ref|XP_009530507.1| (hypothetical protein PHYSODRAFT_302836 [Phytophthora sojae] >gi|348673259|gb|EGZ13078.1| hypothetical protein PHYSODRAFT_302836 [Phytophthora sojae])

HSP 1 Score: 112.464 bits (280), Expect = 2.188e-28
Identity = 52/77 (67.53%), Postives = 63/77 (81.82%), Query Frame = 0 
Query:    1 MLIKLTNENIPYFNAGIFLENKTRVGKVEEVLGPINQVYFTVKPDTGVSAKSFKAEDKLYIGTDKLLPLSRFTGGGG 77
            M+ K TN+ +PYFNAG FLENKTR+GKV+E+LG IN+V FTVKPDTGVSA SF+  DK++I  DKLLPL+RFT   G
Sbjct:   53 MVYKSTNDKVPYFNAGAFLENKTRIGKVDEILGSINEVMFTVKPDTGVSASSFQTGDKVFISPDKLLPLARFTEKPG 129
The following BLAST results are available for this feature:
BLAST of EWM25001.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585106636|gb|EWM25001.1|5.317e-88100.00h aca ribonucleoprotein complex subunit 1 [Nannoch... [more]
gi|553177729|ref|XP_005852493.1|1.100e-52100.00H/ACA ribonucleoprotein complex subunit 1, partial... [more]
gi|1173945666|gb|OQR94264.1|5.071e-3071.05H/ACA ribonucleoprotein complex subunit [Achlya hy... [more]
gi|675181625|ref|XP_008899697.1|7.483e-3071.43hypothetical protein PPTG_07283 [Phytophthora para... [more]
gi|566031859|gb|ETI54770.1|7.483e-3071.43hypothetical protein F443_02470 [Phytophthora para... [more]
gi|669151176|ref|XP_008611150.1|9.676e-3071.05H/ACA ribonucleoprotein complex subunit 1 [Saprole... [more]
gi|673029380|ref|XP_008868651.1|1.763e-2969.74hypothetical protein H310_05663 [Aphanomyces invad... [more]
gi|953495679|emb|CEG42575.1|3.777e-2968.83h aca ribonucleoprotein complex subunit 1 [Plasmop... [more]
gi|1214704969|gb|OWZ16743.1|4.728e-2968.83H/ACA ribonucleoprotein complex subunit [Phytophth... [more]
gi|695430714|ref|XP_009530507.1|2.188e-2867.53hypothetical protein PHYSODRAFT_302836 [Phytophtho... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna5676rna5676Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications